mRNA_L-digitata_M_contig99810.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99810.1.1
Unique NamemRNA_L-digitata_M_contig99810.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99810.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99810contigL-digitata_M_contig99810:2..636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size635
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408658.3478038-UTR-L-digitata_M_contig99810:1..2331682408658.3478038-UTR-L-digitata_M_contig99810:1..233Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig99810 2..233 +
1682408658.3805716-UTR-L-digitata_M_contig99810:572..6361682408658.3805716-UTR-L-digitata_M_contig99810:572..636Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig99810 573..636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408658.3638265-CDS-L-digitata_M_contig99810:233..5721682408658.3638265-CDS-L-digitata_M_contig99810:233..572Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99810 234..572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99810.1.1prot_L-digitata_M_contig99810.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99810 234..572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99810.1.1

>prot_L-digitata_M_contig99810.1.1 ID=prot_L-digitata_M_contig99810.1.1|Name=mRNA_L-digitata_M_contig99810.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=113bp
MLVRQWTFADSRWPTIPDRQRSAQHILLFCFPAALDSITLRIIYIVRRLQ
TGTHAPVYIFLGPIGPGLMIGIKLPLKQNKKKKEKKRRATAVPRRPCVYF
LRSPKRKRKNWL*
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mRNA from alignment at L-digitata_M_contig99810:2..636+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99810.1.1 ID=mRNA_L-digitata_M_contig99810.1.1|Name=mRNA_L-digitata_M_contig99810.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=635bp|location=Sequence derived from alignment at L-digitata_M_contig99810:2..636+ (Laminaria digitata LdigPH10_18mv male)
CAGACATGGACAACAGACCCTACACTATATCATACCACTTACAGGATGGG
TCACTGATGCAAGTAGGTATGATACATATTATACATATGATGCCGTCCGG
CCTTGTGACGCTGGTACGGCACTGTATATTCGCTGACTCGCGGTGGCCTA
CAATACCAGGCCGCCAGCGATCAGCACAGCAGATACGTTTGTTTGTTCGT
TTGATTTTTCCCTGCCGGCGCTTAACAGCGTGATGTTGGTACGACAATGG
ACATTCGCTGACTCGCGGTGGCCTACCATACCAGACCGCCAGCGATCAGC
ACAGCATATACTGTTGTTTTGTTTCCCTGCGGCGCTTGACAGCATTACAC
TACGAATTATTTATATAGTACGCCGGTTGCAGACAGGTACTCATGCACCG
GTATACATTTTCCTGGGGCCAATTGGTCCCGGGTTGATGATAGGTATAAA
GCTACCGCTGAAGCAAAACAAAAAAAAAAAAGAGAAAAAGCGGCGAGCGA
CGGCTGTACCGCGCCGCCCGTGTGTATATTTCCTTCGGAGCCCAAAAAGA
AAAAGAAAAAATTGGCTGTAACTCTACTACGTGTATCTGGTCCGAACACA
GACAGGTCCAGGTACTCCCGAGCATTTAGTTCATA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99810:2..636+

>mRNA_L-digitata_M_contig99810.1.1 ID=mRNA_L-digitata_M_contig99810.1.1|Name=mRNA_L-digitata_M_contig99810.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=339bp|location=Sequence derived from alignment at L-digitata_M_contig99810:2..636+ (Laminaria digitata LdigPH10_18mv male)
ATGTTGGTACGACAATGGACATTCGCTGACTCGCGGTGGCCTACCATACC
AGACCGCCAGCGATCAGCACAGCATATACTGTTGTTTTGTTTCCCTGCGG
CGCTTGACAGCATTACACTACGAATTATTTATATAGTACGCCGGTTGCAG
ACAGGTACTCATGCACCGGTATACATTTTCCTGGGGCCAATTGGTCCCGG
GTTGATGATAGGTATAAAGCTACCGCTGAAGCAAAACAAAAAAAAAAAAG
AGAAAAAGCGGCGAGCGACGGCTGTACCGCGCCGCCCGTGTGTATATTTC
CTTCGGAGCCCAAAAAGAAAAAGAAAAAATTGGCTGTAA
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