mRNA_L-digitata_M_contig99766.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99766.2.1
Unique NamemRNA_L-digitata_M_contig99766.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99766.2.1 vs. uniprot
Match: A0A2E8XPN2_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XPN2_9PROT)

HSP 1 Score: 155 bits (391), Expect = 5.460e-45
Identity = 85/107 (79.44%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:    1 SCEAGAVVAGAGQAERAKLRAFGAEFGMAFQITDDILDETGDASEVGKAVGKDSERGKATLVSLRGLKGARDAALEHAQRAVENLDFFGEKADLLRAAATQLIDRRV 321
            SCEAGAVVA +G   R ++RAFGAEFG+AFQITDDILDETGDA+E GKAVGKDS RGKATLVSL GL  AR+AA  HA+ AVENLDFFGEKADLLRAAA QLIDR V
Sbjct:  154 SCEAGAVVAESGDEARRRMRAFGAEFGLAFQITDDILDETGDAAEAGKAVGKDSARGKATLVSLNGLDAAREAAENHARAAVENLDFFGEKADLLRAAAGQLIDRCV 260
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BLAST of mRNA_L-digitata_M_contig99766.2.1 vs. uniprot
Match: A0A2E7PN76_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PN76_9PROT)

HSP 1 Score: 144 bits (362), Expect = 3.930e-40
Identity = 76/107 (71.03%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 SCEAGAVVAGAGQAERAKLRAFGAEFGMAFQITDDILDETGDASEVGKAVGKDSERGKATLVSLRGLKGARDAALEHAQRAVENLDFFGEKADLLRAAATQLIDRRV 321
            SCEAGAV AGA +  RA LRAFG +FG+AFQITDDILDE GD +E GK VGKD  RGKAT VS  GL+GAR+ A +H Q+AV NLDFFG+KA+LLRAAA +LIDRRV
Sbjct:  199 SCEAGAVSAGADETARAHLRAFGEDFGLAFQITDDILDEVGDVAEAGKTVGKDQARGKATFVSRHGLQGAREIAAQHVQKAVGNLDFFGQKAELLRAAAERLIDRRV 305
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BLAST of mRNA_L-digitata_M_contig99766.2.1 vs. uniprot
Match: A0A2E7I4S8_9PROT (Farnesyl-diphosphate synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E7I4S8_9PROT)

HSP 1 Score: 138 bits (347), Expect = 6.570e-38
Identity = 76/107 (71.03%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:    1 SCEAGAVVAGAGQAERAKLRAFGAEFGMAFQITDDILDETGDASEVGKAVGKDSERGKATLVSLRGLKGARDAALEHAQRAVENLDFFGEKADLLRAAATQLIDRRV 321
            SCEAGAV+AGAG+ ER  LR FG  +G+AFQITDDILDE GDA E GK VGKD  RGKAT VS  GL+GAR  A  H Q AV NLDFFG+KADLLR AA  LIDRRV
Sbjct:  197 SCEAGAVLAGAGETERNHLREFGVNYGLAFQITDDILDEIGDAVETGKTVGKDQVRGKATFVSRHGLEGARVIACRHIQIAVANLDFFGQKADLLRDAAESLIDRRV 303
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BLAST of mRNA_L-digitata_M_contig99766.2.1 vs. uniprot
Match: A0A848WA52_9PROT (Polyprenyl synthetase family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848WA52_9PROT)

HSP 1 Score: 117 bits (293), Expect = 4.190e-30
Identity = 60/106 (56.60%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 SCEAGAVVAGAGQAERAKLRAFGAEFGMAFQITDDILDETGDASEVGKAVGKDSERGKATLVSLRGLKGARDAALEHAQRAVENLDFFGEKADLLRAAATQLIDRR 318
            +CE+GA++  A   +RA LRAFG  FG+AFQITDD++D TGDA E GKAVGKD+ +GKATLV L+G++GAR+ A      AVE+LD +G+KADLL     ++ DRR
Sbjct:  171 ACESGAILGQASDDQRAALRAFGVNFGLAFQITDDLMDVTGDAGEAGKAVGKDAAQGKATLVELQGVEGAREIAARFCHNAVESLDLYGDKADLLCEITRRITDRR 276
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BLAST of mRNA_L-digitata_M_contig99766.2.1 vs. uniprot
Match: A0A6N8XIZ4_9PROT (Polyprenyl synthetase family protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N8XIZ4_9PROT)

HSP 1 Score: 106 bits (264), Expect = 1.090e-25
Identity = 59/106 (55.66%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:    1 SCEAGAVVAGAGQAERAKLRAFGAEFGMAFQITDDILDETGDASEVGKAVGKDSERGKATLVSLRGLKGARDAALEHAQRAVENLDFFGEKADLLRAAATQLIDRR 318
            SC+AGA++ GA +AER+ L A+  + G+AFQI DDILDETG+A+EVGK VGKD+  GKAT +S+ GL  AR+ A   A +AV+ L+ FG +ADLLR AA   + RR
Sbjct:  184 SCQAGAILGGANEAERSALAAYTEDLGLAFQIADDILDETGNAAEVGKKVGKDASAGKATFISILGLDAARERANLLALQAVKVLECFGARADLLREAAHFAVGRR 289
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BLAST of mRNA_L-digitata_M_contig99766.2.1 vs. uniprot
Match: A0A7X0B146_9PROT (Farnesyl diphosphate synthase n=11 Tax=Azospirillaceae TaxID=2829815 RepID=A0A7X0B146_9PROT)

HSP 1 Score: 102 bits (255), Expect = 3.420e-24
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    4 CEAGAVVAGAGQAERAKLRAFGAEFGMAFQITDDILDETGDASEVGKAVGKDSERGKATLVSLRGLKGARDAALEHAQRAVENLDFFGEKADLLRAAATQLIDR 315
            CEAG ++ GA +AERA LR + A+FG+ FQI+DD++D  GD+ + GK VGKD  +GKATL+SL GL  AR   +E A++A   LD FG  AD LR     LIDR
Sbjct:  208 CEAGPILGGASEAERALLRDYAADFGLVFQISDDLIDAIGDSGKAGKTVGKDEAQGKATLISLLGLDAARAKVVELAEQAAARLDGFGSAADPLRGLPFMLIDR 311
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BLAST of mRNA_L-digitata_M_contig99766.2.1 vs. uniprot
Match: A0A6B1HPU9_9PROT (Polyprenyl synthetase family protein n=3 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6B1HPU9_9PROT)

HSP 1 Score: 102 bits (254), Expect = 3.860e-24
Identity = 57/106 (53.77%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 SCEAGAVVAGAGQAERAKLRAFGAEFGMAFQITDDILDETGDASEVGKAVGKDSERGKATLVSLRGLKGARDAALEHAQRAVENLDFFGEKADLLRAAATQLIDRR 318
            SC++GA++ GA +++RA L A+    G+AFQI DDILDETGDA E+GK VGKD+  GKAT +S+ GL+ AR+ A   A +AV  L+ FGE+A LLR AA   + RR
Sbjct:  194 SCQSGALLGGASESDRAALAAYTEALGLAFQIADDILDETGDAVEIGKQVGKDARAGKATFISILGLEAARERANILALQAVTALECFGERAGLLRDAAQFAVGRR 299
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BLAST of mRNA_L-digitata_M_contig99766.2.1 vs. uniprot
Match: A0A154W9Z6_9PROT (Farnesyl-diphosphate synthase n=1 Tax=Oceanibaculum pacificum TaxID=580166 RepID=A0A154W9Z6_9PROT)

HSP 1 Score: 101 bits (252), Expect = 6.980e-24
Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = 1 
Query:    1 SCEAGAVVAGAGQAERAKLRAFGAEFGMAFQITDDILDETGDASEVGKAVGKDSERGKATLVSLRGLKGARDAALEHAQRAVENLDFFGEKADLLRAAATQLIDRR 318
            SCEAGA++   G A R  LR++G E G+AFQI DD+LD  GD++E GK  G D+  GKATLV+++G++ AR  A    ++A  +LDFF EKADLL++ A  +IDRR
Sbjct:  189 SCEAGAILGKGGPAARYALRSYGQEMGLAFQIADDLLDIEGDSAETGKPTGLDAAAGKATLVAVQGVESARAHASMLVEQAARHLDFFDEKADLLKSVARFVIDRR 294
[Close]
BLAST of mRNA_L-digitata_M_contig99766.2.1 vs. uniprot
Match: UPI00131E261E (polyprenyl synthetase family protein n=1 Tax=Caulobacter sp. S45 TaxID=1641861 RepID=UPI00131E261E)

HSP 1 Score: 100 bits (249), Expect = 1.710e-23
Identity = 54/105 (51.43%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 SCEAGAVVAGAGQAERAKLRAFGAEFGMAFQITDDILDETGDASEVGKAVGKDSERGKATLVSLRGLKGARDAALEHAQRAVENLDFFGEKADLLRAAATQLIDR 315
            SCEAG V+  AG+ +RA+ RA+  + G+AFQI DD++D T  A + GKAVGKD+E GKATLVS+ G++GAR  AL  A RA + L  +G +A++LRA    L++R
Sbjct:  182 SCEAGPVLGEAGEQDRARFRAYAHDLGLAFQIADDLIDATSTAEKAGKAVGKDAEAGKATLVSIMGIEGARAEALRVAARAADALAPYGAEAEVLRALPVFLVER 286
[Close]
BLAST of mRNA_L-digitata_M_contig99766.2.1 vs. uniprot
Match: A0A2D9WFQ9_9PROT (Farnesyl-diphosphate synthase (Fragment) n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A2D9WFQ9_9PROT)

HSP 1 Score: 94.7 bits (234), Expect = 9.290e-23
Identity = 52/107 (48.60%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:    1 SCEAGAVVAGAGQAERAKLRAFGAEFGMAFQITDDILDETGDASEVGKAVGKDSERGKATLVSLRGLKGARDAALEHAQRAVENLDFFGEKADLLRAAATQLIDRRV 321
            SCE+GA++  A + +R  L+ FG   G+AFQITDD+LD TGD +EVGKAV KD ++GKATLVS+ G+  +   A      A+  L+ +G+KADLL      +I RRV
Sbjct:   28 SCESGAILGQATREQRQSLKEFGTNLGIAFQITDDLLDVTGDINEVGKAVRKDYKQGKATLVSINGIDESLATAANFCHNAIALLNLYGDKADLLCELVRHIIKRRV 134
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99766.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8XPN2_9PROT5.460e-4579.44Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2E7PN76_9PROT3.930e-4071.03Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2E7I4S8_9PROT6.570e-3871.03Farnesyl-diphosphate synthase n=1 Tax=Alphaproteob... [more]
A0A848WA52_9PROT4.190e-3056.60Polyprenyl synthetase family protein n=1 Tax=Alpha... [more]
A0A6N8XIZ4_9PROT1.090e-2555.66Polyprenyl synthetase family protein n=1 Tax=Rhodo... [more]
A0A7X0B146_9PROT3.420e-2452.88Farnesyl diphosphate synthase n=11 Tax=Azospirilla... [more]
A0A6B1HPU9_9PROT3.860e-2453.77Polyprenyl synthetase family protein n=3 Tax=Rhodo... [more]
A0A154W9Z6_9PROT6.980e-2451.89Farnesyl-diphosphate synthase n=1 Tax=Oceanibaculu... [more]
UPI00131E261E1.710e-2351.43polyprenyl synthetase family protein n=1 Tax=Caulo... [more]
A0A2D9WFQ9_9PROT9.290e-2348.60Farnesyl-diphosphate synthase (Fragment) n=1 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99766contigL-digitata_M_contig99766:625..948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog176299.Atu2721
Preferred nameispA
PFAMspolyprenyl_synt
Model size324
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00279
KEGG koko:K00795
KEGG ReactionR01658,R02003
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00364
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009536,GO:0009842,GO:0009987,GO:0016114,GO:0016740,GO:0016765,GO:0019637,GO:0033385,GO:0033386,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0090407,GO:1901576
Exons1
Evalue3.67e-24
EggNOG OGsCOG0142@1|root,COG0142@2|Bacteria,1MWNG@1224|Proteobacteria,2TR79@28211|Alphaproteobacteria,4B7SS@82115|Rhizobiaceae
Ec32 ortholog descriptionGeranylgeranyl pyrophosphate synthetase, chloroplast precursor;
Ec32 orthologEc-16_004330.1
EC2.5.1.1,2.5.1.10
DescriptionBelongs to the FPP GGPP synthase family
Cds size324
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408657.7965465-CDS-L-digitata_M_contig99766:624..9481682408657.7965465-CDS-L-digitata_M_contig99766:624..948Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99766 625..948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99766.2.1prot_L-digitata_M_contig99766.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99766 625..948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99766.2.1

>prot_L-digitata_M_contig99766.2.1 ID=prot_L-digitata_M_contig99766.2.1|Name=mRNA_L-digitata_M_contig99766.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=108bp
SCEAGAVVAGAGQAERAKLRAFGAEFGMAFQITDDILDETGDASEVGKAV
GKDSERGKATLVSLRGLKGARDAALEHAQRAVENLDFFGEKADLLRAAAT
QLIDRRV*
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mRNA from alignment at L-digitata_M_contig99766:625..948-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99766.2.1 ID=mRNA_L-digitata_M_contig99766.2.1|Name=mRNA_L-digitata_M_contig99766.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=324bp|location=Sequence derived from alignment at L-digitata_M_contig99766:625..948- (Laminaria digitata LdigPH10_18mv male)
TCTTGTGAGGCTGGCGCGGTCGTTGCGGGTGCGGGGCAGGCCGAGCGTGC
GAAATTGCGCGCCTTTGGCGCTGAATTCGGCATGGCGTTTCAGATTACCG
ATGACATTCTCGATGAGACTGGGGACGCCTCGGAAGTCGGAAAAGCCGTA
GGCAAGGACAGTGAGCGGGGAAAAGCGACCCTCGTGTCACTGCGCGGGCT
CAAGGGCGCGCGTGATGCGGCATTGGAGCACGCACAAAGAGCGGTGGAAA
ACCTTGATTTCTTTGGGGAAAAGGCAGATTTATTGCGCGCCGCCGCGACG
CAGTTGATCGACAGGCGGGTATGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99766:625..948-

>mRNA_L-digitata_M_contig99766.2.1 ID=mRNA_L-digitata_M_contig99766.2.1|Name=mRNA_L-digitata_M_contig99766.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=324bp|location=Sequence derived from alignment at L-digitata_M_contig99766:625..948- (Laminaria digitata LdigPH10_18mv male)
TCTTGTGAGGCTGGCGCGGTCGTTGCGGGTGCGGGGCAGGCCGAGCGTGC
GAAATTGCGCGCCTTTGGCGCTGAATTCGGCATGGCGTTTCAGATTACCG
ATGACATTCTCGATGAGACTGGGGACGCCTCGGAAGTCGGAAAAGCCGTA
GGCAAGGACAGTGAGCGGGGAAAAGCGACCCTCGTGTCACTGCGCGGGCT
CAAGGGCGCGCGTGATGCGGCATTGGAGCACGCACAAAGAGCGGTGGAAA
ACCTTGATTTCTTTGGGGAAAAGGCAGATTTATTGCGCGCCGCCGCGACG
CAGTTGATCGACAGGCGGGTATGA
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