mRNA_L-digitata_M_contig9976.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig9976.2.1
Unique NamemRNA_L-digitata_M_contig9976.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig9976.2.1 vs. uniprot
Match: D8LQQ0_ECTSI (GPI ethanolamine phosphate transferase 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQQ0_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.410e-33
Identity = 67/98 (68.37%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:    1 IQRLKGLTTGGLPTFIDFRDNFHSPEIAEDNWVAQVRARAA-------------------------QLVFMGDDTWTSLYPTYFSRSYPFPSFNTRCL 219
            +QRLKGLTTGGLPTFIDFRDNFHS +IAEDNWVAQVR RAA                         +LVFMGDDTWTSLYPTYFSRSYPFPSFNTR L
Sbjct:  143 MQRLKGLTTGGLPTFIDFRDNFHSAQIAEDNWVAQVRERAARRRGASGDVNAXXXXXXXXXXXXXXELVFMGDDTWTSLYPTYFSRSYPFPSFNTRDL 240
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BLAST of mRNA_L-digitata_M_contig9976.2.1 vs. uniprot
Match: A0A836CFR5_9STRA (GPI ethanolamine phosphate transferase 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFR5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.620e-30
Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 IQRLKGLTTGGLPTFIDFRDNFHSPEIAEDNWVAQVRARAAQLVFMGDDTWTSLYPTYFSRSYPFPSFNTRCL 219
            +QRLKGLTTG LPTFIDFR+NFHSP+I EDNWV Q  A    LVFMGDDTW SL+P+ F R++PFPSFNTR L
Sbjct:  112 MQRLKGLTTGALPTFIDFRNNFHSPQIEEDNWVQQAAALGMPLVFMGDDTWASLFPSQFQRAFPFPSFNTRDL 184
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BLAST of mRNA_L-digitata_M_contig9976.2.1 vs. uniprot
Match: A0A4D9CYS9_9STRA (GPI ethanolamine phosphate transferase 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYS9_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.430e-25
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 IQRLKGLTTGGLPTFIDFRDNFHSPEIAEDNWVAQVRARAAQLVFMGDDTWTSLYPTYFSRSYPFPSFNTRCL 219
            +QRLKGLTTG LPTF+DFR NFHSP IAEDN V Q++    ++ FMGDDTW  L+P  F RS+P+PSFNTR L
Sbjct:  154 VQRLKGLTTGALPTFLDFRQNFHSPAIAEDNLVHQLKQAGKRITFMGDDTWELLFPGAFDRSFPYPSFNTRDL 226
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BLAST of mRNA_L-digitata_M_contig9976.2.1 vs. uniprot
Match: A0A397BDQ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BDQ0_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.310e-23
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 IQRLKGLTTGGLPTFIDFRDNFHSPEIAEDNWVAQVRARAAQLVFMGDDTWTSLYPTYFSRSYPFPSFNTRCL 219
            +QRLKGLTTG LPTF+D +DN HS EI ED+W+ Q+ A    +VFMGDDTW  LYP+ F R+Y + SFN + L
Sbjct:  136 MQRLKGLTTGTLPTFLDIKDNMHSEEIVEDSWIKQLTAMNKSIVFMGDDTWGKLYPSTFLRNYSYDSFNVKDL 208
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BLAST of mRNA_L-digitata_M_contig9976.2.1 vs. uniprot
Match: A0A7R9UGL9_9STRA (GPI ethanolamine phosphate transferase 3 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGL9_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 8.080e-23
Identity = 47/79 (59.49%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 IQRLKGLTTGGLPTFIDFRDNFHSPEIAEDNWVAQV-RARAAQLV-----FMGDDTWTSLYPTYFSRSYPFPSFNTRCL 219
            +QRLKGLTTGGLPTF+DFR NFHS  + EDN ++Q+ ++ +  LV      MGDDTWT+LYP  F R+YP+PSFN+R L
Sbjct:   65 MQRLKGLTTGGLPTFVDFRKNFHSSGVEEDNILSQLLKSNSTGLVKEYGVLMGDDTWTALYPESFERAYPYPSFNSRDL 143
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BLAST of mRNA_L-digitata_M_contig9976.2.1 vs. uniprot
Match: A0A6A1V889_9ROSI (GPI ethanolamine phosphate transferase 3 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1V889_9ROSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.220e-22
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 IQRLKGLTTGGLPTFIDFRDNFHSPEIAEDNWVAQVRARAAQLVFMGDDTWTSLYPTYFSRSYPFPSFNTRCL 219
            +QRLKGLTTGGLPTF+D  ++F +P I EDN++ Q+     Q+V MGDDTWT L+P +FS+SYP+PSFN + L
Sbjct:   60 LQRLKGLTTGGLPTFVDVGNSFGAPAIVEDNFIHQLVQNRKQVVMMGDDTWTQLFPNHFSKSYPYPSFNVKDL 132
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BLAST of mRNA_L-digitata_M_contig9976.2.1 vs. uniprot
Match: A0A6D2L725_9BRAS (GPI ethanolamine phosphate transferase 3 n=2 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2L725_9BRAS)

HSP 1 Score: 99.4 bits (246), Expect = 1.220e-22
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 IQRLKGLTTGGLPTFIDFRDNFHSPEIAEDNWVAQVRARAAQLVFMGDDTWTSLYPTYFSRSYPFPSFNTRCL 219
            +QRLKGLTTGGLPTFID  ++F +P I EDN+++Q+     +LV MGDDTWT L+P  F +SYPFPSFN + L
Sbjct:  137 LQRLKGLTTGGLPTFIDVGNSFGAPAIVEDNFISQLVLNGKRLVMMGDDTWTQLFPNQFQKSYPFPSFNVKDL 209
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BLAST of mRNA_L-digitata_M_contig9976.2.1 vs. uniprot
Match: A0A2J6LFT6_LACSA (GPI ethanolamine phosphate transferase 3 n=5 Tax=Lactuca TaxID=4235 RepID=A0A2J6LFT6_LACSA)

HSP 1 Score: 99.0 bits (245), Expect = 1.670e-22
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 IQRLKGLTTGGLPTFIDFRDNFHSPEIAEDNWVAQVRARAAQLVFMGDDTWTSLYPTYFSRSYPFPSFNTRCL 219
            +QRLKGLTTGGLPTFID  ++F +P I EDN + Q+ A   ++V MGDDTWT L+P +F++SYP+PSFN + L
Sbjct:   76 LQRLKGLTTGGLPTFIDIGNSFGAPAIVEDNLIHQLVANGKRIVMMGDDTWTQLFPNHFNKSYPYPSFNVKDL 148
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BLAST of mRNA_L-digitata_M_contig9976.2.1 vs. uniprot
Match: A0A024TEG7_9STRA (GPI ethanolamine phosphate transferase 3 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEG7_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.270e-22
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 IQRLKGLTTGGLPTFIDFRDNFHSPEIAEDNWVAQVRARAAQLVFMGDDTWTSLYPTYFSRSYPFPSFNTRCL 219
            +QRLKGLTTG LPTF+D +DN HS EI ED+W+ Q+ A    +VFMGDDTW  LYPT F R+Y + SFN + L
Sbjct:  134 MQRLKGLTTGTLPTFLDIKDNMHSEEIVEDSWIKQLTALNKSIVFMGDDTWGKLYPTSFLRNYSYDSFNVKDL 206
[Close]
BLAST of mRNA_L-digitata_M_contig9976.2.1 vs. uniprot
Match: S8CTG6_9LAMI (GPI ethanolamine phosphate transferase 3 (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CTG6_9LAMI)

HSP 1 Score: 98.6 bits (244), Expect = 2.280e-22
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 IQRLKGLTTGGLPTFIDFRDNFHSPEIAEDNWVAQVRARAAQLVFMGDDTWTSLYPTYFSRSYPFPSFNTRCL 219
            +QRLKGLTTGGLPTFID  ++F +PEI ED+W+ Q+     ++V MGDDTW  L+P +F RS+PFPSFN + L
Sbjct:  107 LQRLKGLTTGGLPTFIDVGNSFGAPEIVEDSWIHQLVRNGKRVVMMGDDTWVQLFPDHFIRSHPFPSFNVKDL 179
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9976.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQQ0_ECTSI1.410e-3368.37GPI ethanolamine phosphate transferase 3 n=2 Tax=E... [more]
A0A836CFR5_9STRA5.620e-3072.60GPI ethanolamine phosphate transferase 3 n=1 Tax=T... [more]
A0A4D9CYS9_9STRA2.430e-2565.75GPI ethanolamine phosphate transferase 3 n=2 Tax=M... [more]
A0A397BDQ0_9STRA3.310e-2358.90Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7R9UGL9_9STRA8.080e-2359.49GPI ethanolamine phosphate transferase 3 (Fragment... [more]
A0A6A1V889_9ROSI1.220e-2258.90GPI ethanolamine phosphate transferase 3 n=1 Tax=M... [more]
A0A6D2L725_9BRAS1.220e-2260.27GPI ethanolamine phosphate transferase 3 n=2 Tax=C... [more]
A0A2J6LFT6_LACSA1.670e-2258.90GPI ethanolamine phosphate transferase 3 n=5 Tax=L... [more]
A0A024TEG7_9STRA2.270e-2260.27GPI ethanolamine phosphate transferase 3 n=2 Tax=A... [more]
S8CTG6_9LAMI2.280e-2258.90GPI ethanolamine phosphate transferase 3 (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9976contigL-digitata_M_contig9976:8946..9344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQQ0
Preferred namePIGO
PFAMsPhosphodiest
Model size219
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016772,GO:0016780,GO:0019538,GO:0019637,GO:0031224,GO:0031984,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0051377,GO:0071704,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
Exons2
Evalue2.31e-34
EggNOG OGsCOG1524@1|root,KOG2126@2759|Eukaryota
Descriptionmannose-ethanolamine phosphotransferase activity
Cds size219
COG categoryU
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408657.6704547-CDS-L-digitata_M_contig9976:8945..90401682408657.6704547-CDS-L-digitata_M_contig9976:8945..9040Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9976 8946..9040 -
1682408657.689795-CDS-L-digitata_M_contig9976:9220..93441682408657.689795-CDS-L-digitata_M_contig9976:9220..9344Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9976 9221..9344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9976.2.1prot_L-digitata_M_contig9976.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig9976 8946..9344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig9976.2.1

>prot_L-digitata_M_contig9976.2.1 ID=prot_L-digitata_M_contig9976.2.1|Name=mRNA_L-digitata_M_contig9976.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=73bp
IQRLKGLTTGGLPTFIDFRDNFHSPEIAEDNWVAQVRARAAQLVFMGDDT
WTSLYPTYFSRSYPFPSFNTRCL
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mRNA from alignment at L-digitata_M_contig9976:8946..9344-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig9976.2.1 ID=mRNA_L-digitata_M_contig9976.2.1|Name=mRNA_L-digitata_M_contig9976.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=399bp|location=Sequence derived from alignment at L-digitata_M_contig9976:8946..9344- (Laminaria digitata LdigPH10_18mv male)
ATCCAGAGACTGAAGGGGCTGACCACGGGAGGGCTTCCGACGTTCATCGA
CTTCCGCGACAACTTTCATAGCCCGGAGATAGCCGAGGACAACTGGGTCG
CCCAGGTCCGAGCTAGGGCTGCCCGTCGCCGCGCTAGCGCAAGCACTAAC
GCTAGCGGTGGCAGCGGGAGCGGGGGCGACGAGGAAGGCGGTGGACAAAG
CGGTGCGACGGAGAAGGGGGTCGGCGAGGGGGGTGGGGGTGGGGGTGGGG
ACGGGGGTGGAGGAGGGGGTGGAGGCGGGGGAGGGAGTGGAGGCGTGCGC
GGAGAGCTGGTGTTCATGGGGGACGACACGTGGACCTCGCTCTACCCCAC
GTACTTCTCTCGGAGCTACCCCTTTCCGTCCTTTAACACGAGGTGCTTG
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Coding sequence (CDS) from alignment at L-digitata_M_contig9976:8946..9344-

>mRNA_L-digitata_M_contig9976.2.1 ID=mRNA_L-digitata_M_contig9976.2.1|Name=mRNA_L-digitata_M_contig9976.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=219bp|location=Sequence derived from alignment at L-digitata_M_contig9976:8946..9344- (Laminaria digitata LdigPH10_18mv male)
ATCCAGAGACTGAAGGGGCTGACCACGGGAGGGCTTCCGACGTTCATCGA
CTTCCGCGACAACTTTCATAGCCCGGAGATAGCCGAGGACAACTGGGTCG
CCCAGGTCCGAGCTAGGGCTGCCCAGCTGGTGTTCATGGGGGACGACACG
TGGACCTCGCTCTACCCCACGTACTTCTCTCGGAGCTACCCCTTTCCGTC
CTTTAACACGAGGTGCTTG
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