mRNA_L-digitata_M_contig99731.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99731.1.1
Unique NamemRNA_L-digitata_M_contig99731.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99731.1.1 vs. uniprot
Match: A0A6H5K966_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K966_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.010e-19
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 LQLMVVALVQKCGREARVKGQEPPTNLGYYLDEFFDFYGNQLNYASTGEPERGKG 165
            LQLMVVALVQKCGREAR KG++PPTNLG+ L+EFFDFYGNQLNYA+ G    G+G
Sbjct:  353 LQLMVVALVQKCGREARDKGRDPPTNLGFLLEEFFDFYGNQLNYAAVGITLLGEG 407
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99731.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K966_9PHAE1.010e-1976.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99731contigL-digitata_M_contig99731:359..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_006750.1
Cds size159
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408657.4701893-UTR-L-digitata_M_contig99731:358..3671682408657.4701893-UTR-L-digitata_M_contig99731:358..367Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig99731 359..367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408657.4804838-CDS-L-digitata_M_contig99731:367..5261682408657.4804838-CDS-L-digitata_M_contig99731:367..526Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99731 368..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99731.1.1prot_L-digitata_M_contig99731.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99731 368..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99731.1.1

>prot_L-digitata_M_contig99731.1.1 ID=prot_L-digitata_M_contig99731.1.1|Name=mRNA_L-digitata_M_contig99731.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=53bp
MVVALVQKCGREARVKGQEPPTNLGYYLDEFFDFYGNQLNYASTGEPERG
KG*
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mRNA from alignment at L-digitata_M_contig99731:359..526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99731.1.1 ID=mRNA_L-digitata_M_contig99731.1.1|Name=mRNA_L-digitata_M_contig99731.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=168bp|location=Sequence derived from alignment at L-digitata_M_contig99731:359..526+ (Laminaria digitata LdigPH10_18mv male)
CTGCAGTTGATGGTAGTCGCTTTGGTGCAGAAGTGCGGGCGCGAAGCCAG
GGTGAAGGGCCAGGAACCCCCGACCAACCTAGGCTACTACCTGGACGAGT
TTTTCGACTTCTACGGCAATCAGCTGAACTACGCGTCAACGGGTGAGCCA
GAGAGAGGGAAGGGTTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99731:359..526+

>mRNA_L-digitata_M_contig99731.1.1 ID=mRNA_L-digitata_M_contig99731.1.1|Name=mRNA_L-digitata_M_contig99731.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=159bp|location=Sequence derived from alignment at L-digitata_M_contig99731:359..526+ (Laminaria digitata LdigPH10_18mv male)
ATGGTAGTCGCTTTGGTGCAGAAGTGCGGGCGCGAAGCCAGGGTGAAGGG
CCAGGAACCCCCGACCAACCTAGGCTACTACCTGGACGAGTTTTTCGACT
TCTACGGCAATCAGCTGAACTACGCGTCAACGGGTGAGCCAGAGAGAGGG
AAGGGTTAA
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