mRNA_L-digitata_M_contig9972.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig9972.2.1
Unique NamemRNA_L-digitata_M_contig9972.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9972.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9972contigL-digitata_M_contig9972:7793..8050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog28532.XP_010539141.1
PFAMsRetrotran_gag_2,zf-CCHC
Model size258
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000367
EggNOG OGs2D0HN@1|root,2SE87@2759|Eukaryota,381H4@33090|Viridiplantae,3GY31@35493|Streptophyta
Descriptionzinc finger
Cds size246
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408657.3203335-UTR-L-digitata_M_contig9972:7792..78041682408657.3203335-UTR-L-digitata_M_contig9972:7792..7804Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig9972 7793..7804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408657.3374424-CDS-L-digitata_M_contig9972:7804..80501682408657.3374424-CDS-L-digitata_M_contig9972:7804..8050Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9972 7805..8050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9972.2.1prot_L-digitata_M_contig9972.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig9972 7805..8050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig9972.2.1

>prot_L-digitata_M_contig9972.2.1 ID=prot_L-digitata_M_contig9972.2.1|Name=mRNA_L-digitata_M_contig9972.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=82bp
MFHSGASNHMTGNGELVFNREAPPTGQEWVRIGDGTPKKVLCVGTLNLEF
HCDTDVGVQLPRVYVVDGLAINLFSLHAVQAK
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mRNA from alignment at L-digitata_M_contig9972:7793..8050+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig9972.2.1 ID=mRNA_L-digitata_M_contig9972.2.1|Name=mRNA_L-digitata_M_contig9972.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=258bp|location=Sequence derived from alignment at L-digitata_M_contig9972:7793..8050+ (Laminaria digitata LdigPH10_18mv male)
CGAAATGTATGGATGTTTCATAGCGGTGCAAGCAATCACATGACAGGAAA
CGGAGAACTTGTGTTTAACCGAGAGGCGCCCCCAACGGGTCAGGAGTGGG
TCAGGATTGGTGATGGCACACCTAAGAAGGTGCTTTGCGTAGGGACTTTG
AACTTGGAGTTTCACTGCGACACTGATGTAGGCGTGCAACTACCGCGCGT
ATACGTAGTGGATGGACTTGCCATCAACTTATTCTCACTACATGCAGTGC
AGGCCAAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig9972:7793..8050+

>mRNA_L-digitata_M_contig9972.2.1 ID=mRNA_L-digitata_M_contig9972.2.1|Name=mRNA_L-digitata_M_contig9972.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=246bp|location=Sequence derived from alignment at L-digitata_M_contig9972:7793..8050+ (Laminaria digitata LdigPH10_18mv male)
ATGTTTCATAGCGGTGCAAGCAATCACATGACAGGAAACGGAGAACTTGT
GTTTAACCGAGAGGCGCCCCCAACGGGTCAGGAGTGGGTCAGGATTGGTG
ATGGCACACCTAAGAAGGTGCTTTGCGTAGGGACTTTGAACTTGGAGTTT
CACTGCGACACTGATGTAGGCGTGCAACTACCGCGCGTATACGTAGTGGA
TGGACTTGCCATCAACTTATTCTCACTACATGCAGTGCAGGCCAAG
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