mRNA_L-digitata_M_contig99717.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-digitata_M_contig99717.2.1
Unique Name	mRNA_L-digitata_M_contig99717.2.1
Type	mRNA
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))

Homology

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BLAST of mRNA_L-digitata_M_contig99717.2.1 vs. uniprot
Match: A0A222DZ97_9RHOB (Pantothenate synthetase n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222DZ97_9RHOB)

HSP 1 Score: 154 bits (389), Expect = 8.940e-45
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 1

Query:    1 LLSDTARGRAAALHEAVEEMAEGLRAGQAASDLRPKAEARLSAAGFTKVEYLDLRANEDLSLLERPDRPARLLAAAWLAGVRLIDNIGV 267
            LLSD +RGRAAALHEA+E+MAEGLR GQAASDLRPKAE RL+AAGFTKVEYLDLRANEDLSLLERPDRPARLL AAWLAGVRLIDNIGV
Sbjct:  192 LLSDRSRGRAAALHEALEDMAEGLRTGQAASDLRPKAEERLTAAGFTKVEYLDLRANEDLSLLERPDRPARLLVAAWLAGVRLIDNIGV 280

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BLAST of mRNA_L-digitata_M_contig99717.2.1 vs. uniprot
Match: A0A0B3RNM5_9RHOB (Pantothenate synthetase n=9 Tax=Rhodobacterales TaxID=204455 RepID=A0A0B3RNM5_9RHOB)

HSP 1 Score: 142 bits (359), Expect = 2.910e-40
Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 1

Query:    1 LLSDTARGRAAALHEAVEEMAEGLRAGQAASDLRPKAEARLSAAGFTKVEYLDLRANEDLSLLERPDRPARLLAAAWLAGVRLIDNIGV 267
            LLSD AR RAAAL+EA+EEMAEGLR G+AA DLRP AEARLSAAGFT+VEYLDLRAN+DLSLLERP+RPARLL AAWLAGVRLIDNI V
Sbjct:  192 LLSDRARARAAALNEALEEMAEGLRGGRAAQDLRPAAEARLSAAGFTEVEYLDLRANDDLSLLERPERPARLLVAAWLAGVRLIDNIAV 280

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BLAST of mRNA_L-digitata_M_contig99717.2.1 vs. uniprot
Match: A0A8J7WBP9_9RHOB (Pantothenate synthetase n=1 Tax=Aestuariicoccus sp. KMU-90 TaxID=2827239 RepID=A0A8J7WBP9_9RHOB)

HSP 1 Score: 136 bits (342), Expect = 1.040e-37
Identity = 72/89 (80.90%), Postives = 81/89 (91.01%), Query Frame = 1

Query:    1 LLSDTARGRAAALHEAVEEMAEGLRAGQAASDLRPKAEARLSAAGFTKVEYLDLRANEDLSLLERPDRPARLLAAAWLAGVRLIDNIGV 267
            LLSD AR RAAALHEA+EE+AEGLRAG+  ++LR KAEARL AAGFT V+YLDLRA++DLS LERP+RPARLLAAAWLAGVRLIDNIGV
Sbjct:  192 LLSDRARARAAALHEAMEEVAEGLRAGRTMAELRLKAEARLEAAGFTSVDYLDLRAHDDLSALERPERPARLLAAAWLAGVRLIDNIGV 280

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BLAST of mRNA_L-digitata_M_contig99717.2.1 vs. uniprot
Match: UPI001C391EA4 (pantoate--beta-alanine ligase n=1 Tax=Thalassococcus sp. CAU 1522 TaxID=2851652 RepID=UPI001C391EA4)

HSP 1 Score: 122 bits (306), Expect = 2.530e-32
Identity = 66/89 (74.16%), Postives = 74/89 (83.15%), Query Frame = 1

Query:    1 LLSDTARGRAAALHEAVEEMAEGLRAGQAASDLRPKAEARLSAAGFTKVEYLDLRANEDLSLLERPDRPARLLAAAWLAGVRLIDNIGV 267
            LLSD ARGRA AL EA+E +A GLR GQ   +LRP AEARL+AAGFT ++YLDLRA +DLS LE P+RPARLLAAAWLAGVRLIDNI V
Sbjct:  192 LLSDKARGRAPALIEALEAVAAGLRGGQTLGELRPAAEARLAAAGFTDIDYLDLRAVDDLSALETPERPARLLAAAWLAGVRLIDNIAV 280

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BLAST of mRNA_L-digitata_M_contig99717.2.1 vs. uniprot
Match: A0A369TLH5_9RHOB (Pantothenate synthetase n=1 Tax=Thalassococcus profundi TaxID=2282382 RepID=A0A369TLH5_9RHOB)

HSP 1 Score: 120 bits (301), Expect = 1.440e-31
Identity = 69/89 (77.53%), Postives = 72/89 (80.90%), Query Frame = 1

Query:    1 LLSDTARGRAAALHEAVEEMAEGLRAGQAASDLRPKAEARLSAAGFTKVEYLDLRANEDLSLLERPDRPARLLAAAWLAGVRLIDNIGV 267
            LLSD AR  A  LH A+EEMAEGL AG  ASDLR +A ARL  AGFTKVEYLDLRA EDL LLERP+ PARLLAAAWLAGVRLIDNI V
Sbjct:  192 LLSDRARVWAPELHRAMEEMAEGLLAGGCASDLRSQAVARLERAGFTKVEYLDLRACEDLRLLERPEVPARLLAAAWLAGVRLIDNIAV 280

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BLAST of mRNA_L-digitata_M_contig99717.2.1 vs. uniprot
Match: A0A0N7LYJ3_9RHOB (Pantothenate synthetase n=1 Tax=Tropicibacter naphthalenivorans TaxID=441103 RepID=A0A0N7LYJ3_9RHOB)

HSP 1 Score: 119 bits (298), Expect = 3.950e-31
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 1

Query:    1 LLSDTARGRAAALHEAVEEMAEGLRAGQAASDLRPKAEARLSAAGFTKVEYLDLRANEDLSLLERPDRPARLLAAAWLAGVRLIDNIGV 267
            L+SD AR +A ALHEA+ EMA GLRAG  A+DLR KAEA++ AAGFT+VEYLDLRA +DLSLL+ P R ARLL AAWLAGVRLIDNI V
Sbjct:  192 LISDRARIKAPALHEALSEMAAGLRAGGTATDLRQKAEAKILAAGFTEVEYLDLRACDDLSLLDTPSREARLLVAAWLAGVRLIDNIAV 280

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BLAST of mRNA_L-digitata_M_contig99717.2.1 vs. uniprot
Match: UPI0011B70DED (pantoate--beta-alanine ligase n=1 Tax=Puniceibacterium confluentis TaxID=1958944 RepID=UPI0011B70DED)

HSP 1 Score: 117 bits (293), Expect = 2.240e-30
Identity = 68/89 (76.40%), Postives = 72/89 (80.90%), Query Frame = 1

Query:    1 LLSDTARGRAAALHEAVEEMAEGLRAGQAASDLRPKAEARLSAAGFTKVEYLDLRANEDLSLLERPDRPARLLAAAWLAGVRLIDNIGV 267
            LLSD AR  A  LH A+EEMAEGLRAG  AS LR  AEARL  AGFT V+YLDLRA +DL+LLER DRPARLLAAAWLAGVRLIDNI V
Sbjct:  192 LLSDRARVWAPELHRAMEEMAEGLRAGGDASALRTAAEARLLRAGFTGVDYLDLRACDDLALLERVDRPARLLAAAWLAGVRLIDNISV 280

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BLAST of mRNA_L-digitata_M_contig99717.2.1 vs. uniprot
Match: UPI0010A38F94 (pantoate--beta-alanine ligase n=1 Tax=Primorskyibacter sp. XY-301 TaxID=2562685 RepID=UPI0010A38F94)

HSP 1 Score: 116 bits (291), Expect = 4.360e-30
Identity = 63/89 (70.79%), Postives = 74/89 (83.15%), Query Frame = 1

Query:    1 LLSDTARGRAAALHEAVEEMAEGLRAGQAASDLRPKAEARLSAAGFTKVEYLDLRANEDLSLLERPDRPARLLAAAWLAGVRLIDNIGV 267
            L+SD AR +A AL+EA+EEMA+GLRAG  A++L  KA AR+ AAGF +VEYLDLRAN+DL LLERP+   RLLAAAWLAGVRLIDNI V
Sbjct:  192 LISDRARVKAPALNEAMEEMADGLRAGGTATELAEKARARILAAGFNEVEYLDLRANDDLRLLERPEGDCRLLAAAWLAGVRLIDNIAV 280

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BLAST of mRNA_L-digitata_M_contig99717.2.1 vs. uniprot
Match: X6KZR7_9RHOB (Pantothenate synthetase n=1 Tax=Rhodobacteraceae bacterium PD-2 TaxID=1169855 RepID=X6KZR7_9RHOB)

HSP 1 Score: 116 bits (291), Expect = 4.950e-30
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 1

Query:    1 LLSDTARGRAAALHEAVEEMAEGLRAGQAASDLRPKAEARLSAAGFTKVEYLDLRANEDLSLLERPDRPARLLAAAWLAGVRLIDNIGV 267
            LLSD AR RA ALHEA++EMAEGLRAG  AS+L   A ARL AAGF+ V+Y+DLRA +DLSLLE P R ARLLAAAWLAGVRLIDNI V
Sbjct:  198 LLSDRARVRAPALHEALQEMAEGLRAGGQASELGAAARARLLAAGFSGVDYIDLRACDDLSLLETPTREARLLAAAWLAGVRLIDNIAV 286

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BLAST of mRNA_L-digitata_M_contig99717.2.1 vs. uniprot
Match: A0A238J5U6_9RHOB (Pantothenate synthetase n=1 Tax=Pelagimonas phthalicica TaxID=1037362 RepID=A0A238J5U6_9RHOB)

HSP 1 Score: 114 bits (286), Expect = 2.420e-29
Identity = 63/89 (70.79%), Postives = 74/89 (83.15%), Query Frame = 1

Query:    1 LLSDTARGRAAALHEAVEEMAEGLRAGQAASDLRPKAEARLSAAGFTKVEYLDLRANEDLSLLERPDRPARLLAAAWLAGVRLIDNIGV 267
            LLSD AR +A  L+EA+EEMAEGLRAG  A +LR +A  ++ AAGFT+VEYLDLRA +DLS+L+ P RPARLLAAAWLAGVRLIDNI V
Sbjct:  192 LLSDRARIKAPVLNEAMEEMAEGLRAGGEAHELRVEARKKILAAGFTEVEYLDLRACDDLSVLDTPTRPARLLAAAWLAGVRLIDNIAV 280

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig99717.2.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig99717.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A222DZ97_9RHOB	8.940e-45	91.01	Pantothenate synthetase n=3 Tax=Roseobacteraceae T...	[more]
A0A0B3RNM5_9RHOB	2.910e-40	85.39	Pantothenate synthetase n=9 Tax=Rhodobacterales Ta...	[more]
A0A8J7WBP9_9RHOB	1.040e-37	80.90	Pantothenate synthetase n=1 Tax=Aestuariicoccus sp...	[more]
UPI001C391EA4	2.530e-32	74.16	pantoate--beta-alanine ligase n=1 Tax=Thalassococc...	[more]
A0A369TLH5_9RHOB	1.440e-31	77.53	Pantothenate synthetase n=1 Tax=Thalassococcus pro...	[more]
A0A0N7LYJ3_9RHOB	3.950e-31	73.03	Pantothenate synthetase n=1 Tax=Tropicibacter naph...	[more]
UPI0011B70DED	2.240e-30	76.40	pantoate--beta-alanine ligase n=1 Tax=Puniceibacte...	[more]
UPI0010A38F94	4.360e-30	70.79	pantoate--beta-alanine ligase n=1 Tax=Primorskyiba...	[more]
X6KZR7_9RHOB	4.950e-30	74.16	Pantothenate synthetase n=1 Tax=Rhodobacteraceae b...	[more]
A0A238J5U6_9RHOB	2.420e-29	70.79	Pantothenate synthetase n=1 Tax=Pelagimonas phthal...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig99717	contig	L-digitata_M_contig99717:678..947 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	1354722.JQLS01000008_gene88
Preferred name	panC
PFAMs	Pantoate_ligase
Model size	270
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC00096,RC00141
KEGG ko	ko:K01918
KEGG Reaction	R02473
KEGG Pathway	ko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110
KEGG Module	M00119
Hectar predicted targeting category	other localisation
Exons	1
Evalue	3.85e-27
EggNOG OGs	COG0414@1\|root,COG0414@2\|Bacteria,1PIC2@1224\|Proteobacteria,2V8RI@28211\|Alphaproteobacteria,46PIB@74030\|Roseovarius
EC	6.3.2.1
Description	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
Cds size	270
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682408657.2015636-CDS-L-digitata_M_contig99717:677..947	1682408657.2015636-CDS-L-digitata_M_contig99717:677..947	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig99717 678..947 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig99717.2.1	prot_L-digitata_M_contig99717.2.1	Laminaria digitata LdigPH10_18mv male	polypeptide	L-digitata_M_contig99717 678..947 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-digitata_M_contig99717:678..947-
coding sequence from alignment at L-digitata_M_contig99717:678..947-

protein sequence of mRNA_L-digitata_M_contig99717.2.1

>prot_L-digitata_M_contig99717.2.1 ID=prot_L-digitata_M_contig99717.2.1|Name=mRNA_L-digitata_M_contig99717.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=90bp
LLSDTARGRAAALHEAVEEMAEGLRAGQAASDLRPKAEARLSAAGFTKVE
YLDLRANEDLSLLERPDRPARLLAAAWLAGVRLIDNIGV*

mRNA from alignment at L-digitata_M_contig99717:678..947-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-digitata_M_contig99717.2.1 ID=mRNA_L-digitata_M_contig99717.2.1|Name=mRNA_L-digitata_M_contig99717.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=270bp|location=Sequence derived from alignment at L-digitata_M_contig99717:678..947- (Laminaria digitata LdigPH10_18mv male)
TTGTTGTCCGATACGGCGCGCGGGCGGGCGGCGGCGCTGCACGAGGCGGT
GGAAGAGATGGCAGAGGGGTTGCGCGCTGGGCAGGCGGCGTCAGACCTGC
GCCCCAAGGCAGAGGCACGGTTATCAGCGGCGGGGTTCACCAAGGTCGAG
TATCTTGACTTGCGGGCCAATGAGGATCTGTCGCTGTTAGAGCGACCGGA
TCGGCCCGCGCGGCTGTTGGCGGCGGCGTGGTTAGCCGGGGTGCGGTTGA
TCGACAATATAGGGGTGTGA

Coding sequence (CDS) from alignment at L-digitata_M_contig99717:678..947-

>mRNA_L-digitata_M_contig99717.2.1 ID=mRNA_L-digitata_M_contig99717.2.1|Name=mRNA_L-digitata_M_contig99717.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=270bp|location=Sequence derived from alignment at L-digitata_M_contig99717:678..947- (Laminaria digitata LdigPH10_18mv male)
TTGTTGTCCGATACGGCGCGCGGGCGGGCGGCGGCGCTGCACGAGGCGGT
GGAAGAGATGGCAGAGGGGTTGCGCGCTGGGCAGGCGGCGTCAGACCTGC
GCCCCAAGGCAGAGGCACGGTTATCAGCGGCGGGGTTCACCAAGGTCGAG
TATCTTGACTTGCGGGCCAATGAGGATCTGTCGCTGTTAGAGCGACCGGA
TCGGCCCGCGCGGCTGTTGGCGGCGGCGTGGTTAGCCGGGGTGCGGTTGA
TCGACAATATAGGGGTGTGA