mRNA_L-digitata_M_contig99712.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99712.1.1
Unique NamemRNA_L-digitata_M_contig99712.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99712.1.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.290e-13
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 YGAAVPGGVEHMGLRARTLHETGNWLVLTDCPNAFNSVKRTVVLKEVANCVPALTPSVAKCY 186
            +G AV GGVE + + A+ +H+TGNW++ TDC NAFN+ KRT ++ + A  +P L   +A+CY
Sbjct:  652 FGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCY 713
[Close]
BLAST of mRNA_L-digitata_M_contig99712.1.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.660e-13
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 YGAAVPGGVEHMGLRARTLHETGNWLVLTDCPNAFNSVKRTVVLKEVANCVPALTPSVAKCY 186
            +G AV GGVE + + A+ +H+TG+W+V TDC NAFN+ KRT ++ + A  VP L   +A+CY
Sbjct:  114 FGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCY 175
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BLAST of mRNA_L-digitata_M_contig99712.1.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.740e-13
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 YGAAVPGGVEHMGLRARTLHETGNWLVLTDCPNAFNSVKRTVVLKEVANCVPALTPSVAKCY 186
            +GAAV GGVE + + A+ +H+TG+W+V TDC NAFN+ KRT ++ + A  VP L   +A+CY
Sbjct:   29 FGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCY 90
[Close]
BLAST of mRNA_L-digitata_M_contig99712.1.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.240e-13
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 YGAAVPGGVEHMGLRARTLHETGNWLVLTDCPNAFNSVKRTVVLKEVANCVPALTPSVAKCY 186
            +G AV GGVE + + A+ +H+TG+W+V TDC NAFN+ KRT ++ + A  VP L   +A+CY
Sbjct:  204 FGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCY 265
[Close]
BLAST of mRNA_L-digitata_M_contig99712.1.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.430e-13
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 YGAAVPGGVEHMGLRARTLHETGNWLVLTDCPNAFNSVKRTVVLKEVANCVPALTPSVAKCY 186
            +G AV GGVE + + A+ +H+TG+W+V TDC NAFN+ KRT ++ + A  VP L   +A+CY
Sbjct:  113 FGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCY 174
[Close]
BLAST of mRNA_L-digitata_M_contig99712.1.1 vs. uniprot
Match: A0A6H5KUZ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.440e-13
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 YGAAVPGGVEHMGLRARTLHETGNWLVLTDCPNAFNSVKRTVVLKEVANCVPALTPSVAKCY 186
            +G AV GGVE + + A+ +H+TG+W+V TDC NAFN+ KRT ++ + A  VP L   +A+CY
Sbjct:   70 FGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCY 131
[Close]
BLAST of mRNA_L-digitata_M_contig99712.1.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.450e-13
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 YGAAVPGGVEHMGLRARTLHETGNWLVLTDCPNAFNSVKRTVVLKEVANCVPALTPSVAKCY 186
            +G AV GGVE + + A+ +H+TG+W+V TDC NAFN+ KRT ++ + A  VP L   +A+CY
Sbjct:  489 FGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCY 550
[Close]
BLAST of mRNA_L-digitata_M_contig99712.1.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.460e-13
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 YGAAVPGGVEHMGLRARTLHETGNWLVLTDCPNAFNSVKRTVVLKEVANCVPALTPSVAKCY 186
            +G AV GGVE + + A+ +H+TG+W+V TDC NAFN+ KRT ++ + A  VP L   +A+CY
Sbjct:  503 FGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCY 564
[Close]
BLAST of mRNA_L-digitata_M_contig99712.1.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.480e-13
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 YGAAVPGGVEHMGLRARTLHETGNWLVLTDCPNAFNSVKRTVVLKEVANCVPALTPSVAKCY 186
            +G AV GGVE + + A+ +H+TG+W+V TDC NAFN+ KRT ++ + A  VP L   +A+CY
Sbjct:  482 FGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCY 543
[Close]
BLAST of mRNA_L-digitata_M_contig99712.1.1 vs. uniprot
Match: A0A6H5KDD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 5.920e-13
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 YGAAVPGGVEHMGLRARTLHETGNWLVLTDCPNAFNSVKRTVVLKEVANCVPALTPSVAKCY 186
            +G AV GGVE + + A+ +H+TG+W+V TDC NAFN+ KRT ++ + A  VP L   +A+CY
Sbjct:   70 FGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAKAAKSVPNLVGYIARCY 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99712.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE1.290e-1346.77Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L4Y4_9PHAE1.660e-1348.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE1.740e-1350.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KR59_9PHAE4.240e-1348.39Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LL14_9PHAE4.430e-1348.39Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KUZ8_9PHAE4.440e-1348.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA96_9PHAE4.450e-1348.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI32_9PHAE4.460e-1348.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE4.480e-1348.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDD0_9PHAE5.920e-1348.39Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99712contigL-digitata_M_contig99712:31..219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size189
Hectar predicted targeting categoryother localisation
Exons1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408657.0848897-CDS-L-digitata_M_contig99712:30..2191682408657.0848897-CDS-L-digitata_M_contig99712:30..219Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99712 31..219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99712.1.1prot_L-digitata_M_contig99712.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99712 31..219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99712.1.1

>prot_L-digitata_M_contig99712.1.1 ID=prot_L-digitata_M_contig99712.1.1|Name=mRNA_L-digitata_M_contig99712.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=63bp
YGAAVPGGVEHMGLRARTLHETGNWLVLTDCPNAFNSVKRTVVLKEVANC
VPALTPSVAKCYG
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mRNA from alignment at L-digitata_M_contig99712:31..219+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99712.1.1 ID=mRNA_L-digitata_M_contig99712.1.1|Name=mRNA_L-digitata_M_contig99712.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=189bp|location=Sequence derived from alignment at L-digitata_M_contig99712:31..219+ (Laminaria digitata LdigPH10_18mv male)
TATGGGGCCGCGGTACCGGGCGGAGTGGAGCATATGGGATTGAGGGCTAG
GACGCTACACGAGACGGGCAACTGGCTCGTTCTCACGGACTGCCCCAACG
CCTTCAACTCCGTCAAAAGGACGGTGGTGCTAAAAGAGGTGGCAAACTGC
GTGCCAGCGCTCACACCGTCAGTGGCCAAGTGCTACGGC
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Coding sequence (CDS) from alignment at L-digitata_M_contig99712:31..219+

>mRNA_L-digitata_M_contig99712.1.1 ID=mRNA_L-digitata_M_contig99712.1.1|Name=mRNA_L-digitata_M_contig99712.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=189bp|location=Sequence derived from alignment at L-digitata_M_contig99712:31..219+ (Laminaria digitata LdigPH10_18mv male)
TATGGGGCCGCGGTACCGGGCGGAGTGGAGCATATGGGATTGAGGGCTAG
GACGCTACACGAGACGGGCAACTGGCTCGTTCTCACGGACTGCCCCAACG
CCTTCAACTCCGTCAAAAGGACGGTGGTGCTAAAAGAGGTGGCAAACTGC
GTGCCAGCGCTCACACCGTCAGTGGCCAAGTGCTACGGC
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