mRNA_L-digitata_M_contig99701.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99701.3.1
Unique NamemRNA_L-digitata_M_contig99701.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99701.3.1 vs. uniprot
Match: A0A2E7V1Z9_9RICK (MBL fold metallo-hydrolase n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E7V1Z9_9RICK)

HSP 1 Score: 191 bits (484), Expect = 8.590e-58
Identity = 80/131 (61.07%), Postives = 107/131 (81.68%), Query Frame = 1
Query:    4 DKCVFTGDIVFNKGHPVIWDGPVQNWIDALDLILSWDVDTVVPGHGPVAGKDEVRDLKNYFIYIDEEVRARYDAGLNVEDAAAEISLDAFQGWLDAERIVMNVNALYKEYSGEAPIFDRIELFAMMSRYRK 396
            D+ VFTGDI+FN+GHPVIW+GP++NW+ A D++L WD++TVVPGHG + GKD +R +K Y IY++ E R RYDAG++VE+AA +ISL  F GW DAERIV+N++ L+ EY+GE P FDRI+LF MM+RY K
Sbjct:  187 DRTVFTGDILFNEGHPVIWEGPIENWVRACDMMLDWDLETVVPGHGAICGKDGIRKMKQYLIYLNAEARKRYDAGMDVEEAALDISLTDFDGWFDAERIVINLHTLFGEYAGERPSFDRIKLFGMMARYAK 317          
BLAST of mRNA_L-digitata_M_contig99701.3.1 vs. uniprot
Match: A0A1Z9SKS4_9PROT (MBL fold metallo-hydrolase n=1 Tax=Rhodospirillaceae bacterium TMED256 TaxID=1986865 RepID=A0A1Z9SKS4_9PROT)

HSP 1 Score: 183 bits (465), Expect = 6.260e-55
Identity = 77/131 (58.78%), Postives = 104/131 (79.39%), Query Frame = 1
Query:    4 DKCVFTGDIVFNKGHPVIWDGPVQNWIDALDLILSWDVDTVVPGHGPVAGKDEVRDLKNYFIYIDEEVRARYDAGLNVEDAAAEISLDAFQGWLDAERIVMNVNALYKEYSGEAPIFDRIELFAMMSRYRK 396
            D+ VFTGDI+FN+GHPVIW+GP+ NW+ A D++L WD++TVVPGHG + GK  ++ +K+Y +YI+ E R RYDAG+ +E+AA +IS+  F GW DAERIV+N+  LY E++GE P FDRI+LF MMSRY K
Sbjct:  187 DRTVFTGDILFNEGHPVIWEGPISNWVRACDMMLEWDLETVVPGHGALCGKAGIQRMKDYLLYIEVEARKRYDAGMEIEEAALDISMADFDGWFDAERIVINLQTLYGEFAGERPSFDRIKLFGMMSRYAK 317          
BLAST of mRNA_L-digitata_M_contig99701.3.1 vs. uniprot
Match: A0A2E6QBG1_9PROT (MBL fold metallo-hydrolase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QBG1_9PROT)

HSP 1 Score: 179 bits (454), Expect = 3.410e-53
Identity = 74/132 (56.06%), Postives = 103/132 (78.03%), Query Frame = 1
Query:    1 DDKCVFTGDIVFNKGHPVIWDGPVQNWIDALDLILSWDVDTVVPGHGPVAGKDEVRDLKNYFIYIDEEVRARYDAGLNVEDAAAEISLDAFQGWLDAERIVMNVNALYKEYSGEAPIFDRIELFAMMSRYRK 396
            +DK VFTGDI+FN+ HP+IW GPV NWI A DL+L WD++TV+PGHGP+A K  +R++++YF+Y+D E R R+DAG+ VE+AA +I++D++  WLD ERI +NV +LY+EY      +DRI L  MM+RYRK
Sbjct:  185 EDKTVFTGDILFNESHPIIWAGPVTNWIKACDLMLGWDLETVIPGHGPIAEKSAIRNMRDYFVYLDTEARKRFDAGMEVEEAALDIAMDSYDHWLDGERITINVQSLYREYGAPPMKWDRISLHGMMARYRK 316          
BLAST of mRNA_L-digitata_M_contig99701.3.1 vs. uniprot
Match: A0A4V1V4U6_9PROT (Lactamase_B domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4V1V4U6_9PROT)

HSP 1 Score: 169 bits (428), Expect = 2.030e-51
Identity = 74/133 (55.64%), Postives = 95/133 (71.43%), Query Frame = 1
Query:    1 DDKCVFTGDIVFNKGHPVIWDGPVQNWIDALDLILSWDVDTVVPGHGPVAGKDEVRDLKNYFIYIDEEVRARYDAGLNVEDAAAEISLDAFQGWLDAERIVMNVNALYKEYSGEAPIFDRIELFAMMSRYRKR 399
            DDK V+TGDI+FN GHP++W GPV NWI+A DL+L WDVD VVPGHGP+  K  VR LK+Y  Y+  E R RYD G+ +E A  +ISL  F  W DAERI + VN LY+E+SG+    D ++LF +M+RY +R
Sbjct:    7 DDKIVYTGDILFNGGHPIVWAGPVDNWINACDLMLGWDVDVVVPGHGPITDKSGVRALKHYLEYVKAEARKRYDEGMTLEQAVDDISLKEFNSWTDAERIYVTVNNLYQEFSGDTSPPDSVKLFGLMARYEER 139          
BLAST of mRNA_L-digitata_M_contig99701.3.1 vs. uniprot
Match: W3RIR2_9BRAD (Beta-lactamase n=1 Tax=Afipia sp. P52-10 TaxID=1429916 RepID=W3RIR2_9BRAD)

HSP 1 Score: 167 bits (423), Expect = 1.750e-48
Identity = 75/131 (57.25%), Postives = 93/131 (70.99%), Query Frame = 1
Query:    4 DKCVFTGDIVFNKGHPVIWDGPVQNWIDALDLILSWDVDTVVPGHGPVAGKDEVRDLKNYFIYIDEEVRARYDAGLNVEDAAAEISLDAFQGWLDAERIVMNVNALYKEYSGEAPIFDRIELFAMMSRYRK 396
            DK VFTGDIVF+ GHP  W GP+ NWI A DLI+SWDV+T+VPGHGP+  K  +RD K YF Y+  E R RYDAGL+V DAA +I L  F GWLD ERI++NVN LYK++   + +   +EL   M RYR+
Sbjct:  185 DKTVFTGDIVFSNGHPPAWAGPISNWIKACDLIMSWDVETIVPGHGPIVQKSALRDFKAYFEYLTREARKRYDAGLSVSDAAYDIDLSPFDGWLDPERIIVNVNTLYKDFGATSGL-SPVELRGWMGRYRR 314          
BLAST of mRNA_L-digitata_M_contig99701.3.1 vs. uniprot
Match: A0A4Q3H7M8_9HYPH (MBL fold metallo-hydrolase (Fragment) n=1 Tax=Rhizobiaceae bacterium TaxID=1913961 RepID=A0A4Q3H7M8_9HYPH)

HSP 1 Score: 163 bits (413), Expect = 2.630e-48
Identity = 74/131 (56.49%), Postives = 94/131 (71.76%), Query Frame = 1
Query:    4 DKCVFTGDIVFNKGHPVIWDGPVQNWIDALDLILSWDVDTVVPGHGPVAGKDEVRDLKNYFIYIDEEVRARYDAGLNVEDAAAEISLDAFQGWLDAERIVMNVNALYKEYSGEAPIFDRIELFAMMSRYRK 396
            D+ VFTGDIVF+ GHP  W GP+ NWI A DLI+SWDVD +VPGHGP+  K  + + K YF Y+  EVR RYDAGL+V DAA +I L  F+GWLD ERI++NVN LY+++   A +   +EL A M RYR+
Sbjct:   70 DRTVFTGDIVFSNGHPPAWAGPISNWIKACDLIMSWDVDIIVPGHGPIVEKSALTNFKAYFEYLTTEVRKRYDAGLSVSDAAYDIDLSQFKGWLDEERIIVNVNTLYRDFGATAGLTP-LELRAWMGRYRR 199          
BLAST of mRNA_L-digitata_M_contig99701.3.1 vs. uniprot
Match: A0A6N8J091_9BURK (MBL fold metallo-hydrolase n=1 Tax=Ramlibacter pinisoli TaxID=2682844 RepID=A0A6N8J091_9BURK)

HSP 1 Score: 165 bits (418), Expect = 1.010e-47
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 1
Query:    1 DDKCVFTGDIVFNKGHPVIWDGPVQNWIDALDLILSWDVDTVVPGHGPVAGKDEVRDLKNYFIYIDEEVRARYDAGLNVEDAAAEISLDAFQGWLDAERIVMNVNALYKEYSGEAPIFDRIELFAMMSRYRKR 399
            +DK V+TGDI+FN GHP++W GPV NWI A DL+LSWDV+ VVPGHGP+  K  VR LK+Y  Y+  E R RYD G+ +E A  +ISL  F  W D+ERIV+ VN LY+++SG+    D + LF +MS+Y +R
Sbjct:  183 EDKVVYTGDILFNGGHPIVWAGPVDNWIKACDLMLSWDVEVVVPGHGPITDKGGVRQLKHYLEYVKAEARKRYDMGMTLEQAVYDISLKEFGSWTDSERIVVTVNNLYQQFSGDTSPPDSVRLFTLMSQYEQR 315          
BLAST of mRNA_L-digitata_M_contig99701.3.1 vs. uniprot
Match: A0A381VKL3_9ZZZZ (Lactamase_B domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381VKL3_9ZZZZ)

HSP 1 Score: 158 bits (400), Expect = 4.820e-47
Identity = 69/128 (53.91%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    4 DKCVFTGDIVFNKGHPVIWDGPVQNWIDALDLILSWDVDTVVPGHGPVAGKDEVRDLKNYFIYIDEEVRARYDAGLNVEDAAAEISLDAFQGWLDAERIVMNVNALYKEYSGEAPIFDRIELFAMMSR 387
            DK  FTGDI+F  GHP+IW GPV NWI A DL++ WDV+T+VPGHGP+  K  VR ++ Y +YI+ E R R+ AGL+V +AA +IS + F  W DAERIV+NV+ LYKE++ +    D +++FAMMS+
Sbjct:   35 DKTAFTGDILFIDGHPIIWAGPVANWIKACDLMIGWDVETIVPGHGPITDKSGVRAVREYLVYIEAEARKRHAAGLSVMEAAQDISFEDFSSWGDAERIVVNVDTLYKEFNNDPSPSDIVQMFAMMSK 162          
BLAST of mRNA_L-digitata_M_contig99701.3.1 vs. uniprot
Match: A0A6P1J0V7_9BURK (MBL fold metallo-hydrolase n=2 Tax=unclassified Hydrogenophaga TaxID=2610897 RepID=A0A6P1J0V7_9BURK)

HSP 1 Score: 161 bits (408), Expect = 3.670e-46
Identity = 71/133 (53.38%), Postives = 93/133 (69.92%), Query Frame = 1
Query:    1 DDKCVFTGDIVFNKGHPVIWDGPVQNWIDALDLILSWDVDTVVPGHGPVAGKDEVRDLKNYFIYIDEEVRARYDAGLNVEDAAAEISLDAFQGWLDAERIVMNVNALYKEYSGEAPIFDRIELFAMMSRYRKR 399
            +DK V+TGDI+FN GHP++W GPV NWI A DL+L WDV+ VVPGHGP+  K  VR LK+Y  Y+  E R RYD G+ +E A  +ISL  F  W DAERI + VN L++E+SG+    D I+LF +M+ Y +R
Sbjct:  184 EDKIVYTGDILFNGGHPIVWAGPVDNWIRACDLMLGWDVEVVVPGHGPITDKSGVRALKHYLEYVKAEARKRYDQGMTLEQAVDDISLKEFNSWTDAERIYVTVNNLFQEFSGDKSPPDSIKLFGLMAHYEER 316          
BLAST of mRNA_L-digitata_M_contig99701.3.1 vs. uniprot
Match: UPI001B1DC5C9 (MBL fold metallo-hydrolase n=1 Tax=Sphingomonas sp. TaxID=28214 RepID=UPI001B1DC5C9)

HSP 1 Score: 159 bits (403), Expect = 1.910e-45
Identity = 72/133 (54.14%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    1 DDKCVFTGDIVFNKGHPVIWDGPVQNWIDALDLILSWDVDTVVPGHGPVAGKDEVRDLKNYFIYIDEEVRARYDAGLNVEDAAAEISLDAFQGWLDAERIVMNVNALYKEYSGEAPIFDRIELFAMMSRYRKR 399
            +D+ V+TGDI+F   HP IW GPV NWI A DL+L WDVD +VPGHGP+ GKDEVR  K Y  Y+ +E R RY+AG++  D A +I+L  F  W DAER+V NV  +Y E SG  P+  R +L+A M RY KR
Sbjct:  182 EDRVVYTGDILFAGAHPAIWSGPVANWIKACDLMLGWDVDVIVPGHGPIVGKDEVRAFKAYLNYVWDETRKRYEAGMDFLDCAFDIALGEFDDWGDAERMVPNVMTIYGELSGTRPVLPREQLWAQMGRYYKR 314          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99701.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7V1Z9_9RICK8.590e-5861.07MBL fold metallo-hydrolase n=1 Tax=Rickettsiales b... [more]
A0A1Z9SKS4_9PROT6.260e-5558.78MBL fold metallo-hydrolase n=1 Tax=Rhodospirillace... [more]
A0A2E6QBG1_9PROT3.410e-5356.06MBL fold metallo-hydrolase n=1 Tax=Rhodospirillace... [more]
A0A4V1V4U6_9PROT2.030e-5155.64Lactamase_B domain-containing protein n=1 Tax=Alph... [more]
W3RIR2_9BRAD1.750e-4857.25Beta-lactamase n=1 Tax=Afipia sp. P52-10 TaxID=142... [more]
A0A4Q3H7M8_9HYPH2.630e-4856.49MBL fold metallo-hydrolase (Fragment) n=1 Tax=Rhiz... [more]
A0A6N8J091_9BURK1.010e-4754.14MBL fold metallo-hydrolase n=1 Tax=Ramlibacter pin... [more]
A0A381VKL3_9ZZZZ4.820e-4753.91Lactamase_B domain-containing protein (Fragment) n... [more]
A0A6P1J0V7_9BURK3.670e-4653.38MBL fold metallo-hydrolase n=2 Tax=unclassified Hy... [more]
UPI001B1DC5C91.910e-4554.14MBL fold metallo-hydrolase n=1 Tax=Sphingomonas sp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99701contigL-digitata_M_contig99701:536..949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1429916.X566_02610
PFAMsLactamase_B
Model size414
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.87e-49
EggNOG OGsCOG0491@1|root,COG0491@2|Bacteria,1PKW8@1224|Proteobacteria,2TUW8@28211|Alphaproteobacteria,3JUHX@41294|Bradyrhizobiaceae
DescriptionMetallo-beta-lactamase superfamily
Cds size414
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408656.828856-CDS-L-digitata_M_contig99701:535..9491682408656.828856-CDS-L-digitata_M_contig99701:535..949Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99701 536..949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99701.3.1prot_L-digitata_M_contig99701.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99701 536..949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99701.3.1

>prot_L-digitata_M_contig99701.3.1 ID=prot_L-digitata_M_contig99701.3.1|Name=mRNA_L-digitata_M_contig99701.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=138bp
DDKCVFTGDIVFNKGHPVIWDGPVQNWIDALDLILSWDVDTVVPGHGPVA
GKDEVRDLKNYFIYIDEEVRARYDAGLNVEDAAAEISLDAFQGWLDAERI
VMNVNALYKEYSGEAPIFDRIELFAMMSRYRKRVGIS*
back to top

mRNA from alignment at L-digitata_M_contig99701:536..949-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99701.3.1 ID=mRNA_L-digitata_M_contig99701.3.1|Name=mRNA_L-digitata_M_contig99701.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=414bp|location=Sequence derived from alignment at L-digitata_M_contig99701:536..949- (Laminaria digitata LdigPH10_18mv male)
GACGATAAATGCGTGTTTACCGGCGATATCGTCTTCAACAAGGGGCATCC TGTAATCTGGGACGGCCCGGTGCAGAACTGGATAGACGCGCTCGATCTGA TCCTGAGCTGGGACGTGGACACCGTGGTGCCGGGCCACGGCCCGGTTGCC GGCAAAGACGAGGTCCGCGATCTTAAAAACTATTTTATCTATATCGATGA AGAGGTCCGCGCCCGCTACGACGCCGGTCTCAACGTCGAAGATGCGGCGG CGGAAATCTCGCTCGATGCGTTTCAGGGCTGGCTCGATGCCGAGCGGATC GTGATGAACGTGAACGCGCTGTACAAGGAATATAGCGGCGAAGCGCCGAT ATTCGACCGGATCGAGCTGTTCGCCATGATGTCGCGCTATCGCAAACGGG TCGGCATTTCCTGA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig99701:536..949-

>mRNA_L-digitata_M_contig99701.3.1 ID=mRNA_L-digitata_M_contig99701.3.1|Name=mRNA_L-digitata_M_contig99701.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=414bp|location=Sequence derived from alignment at L-digitata_M_contig99701:536..949- (Laminaria digitata LdigPH10_18mv male)
GACGATAAATGCGTGTTTACCGGCGATATCGTCTTCAACAAGGGGCATCC
TGTAATCTGGGACGGCCCGGTGCAGAACTGGATAGACGCGCTCGATCTGA
TCCTGAGCTGGGACGTGGACACCGTGGTGCCGGGCCACGGCCCGGTTGCC
GGCAAAGACGAGGTCCGCGATCTTAAAAACTATTTTATCTATATCGATGA
AGAGGTCCGCGCCCGCTACGACGCCGGTCTCAACGTCGAAGATGCGGCGG
CGGAAATCTCGCTCGATGCGTTTCAGGGCTGGCTCGATGCCGAGCGGATC
GTGATGAACGTGAACGCGCTGTACAAGGAATATAGCGGCGAAGCGCCGAT
ATTCGACCGGATCGAGCTGTTCGCCATGATGTCGCGCTATCGCAAACGGG
TCGGCATTTCCTGA
back to top