mRNA_L-digitata_M_contig99699.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99699.2.1
Unique NamemRNA_L-digitata_M_contig99699.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99699.2.1 vs. uniprot
Match: A0A2E7PGM8_9PROT (Peptidase S15 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PGM8_9PROT)

HSP 1 Score: 216 bits (550), Expect = 2.200e-65
Identity = 94/114 (82.46%), Postives = 103/114 (90.35%), Query Frame = 1
Query:    1 PWRPWHSHDEKQPLKPGSIYELDIEIWPTCVVVPAGYRLALTVRGKDYVYSGEPLNLSNFAHPLDGCGPFLHDDPKDRPKKIFGGDVTVHTGPNHPSYVMLPVVPPKSAAKKKK 342
            PWRPWHSHD KQPL PG IYELDIEIWPTC+VVPAGYRLAL+VRGKDY YSG  L LSNFAHPL+GCGPFLHDDP+DRPKKIFGGDVT+HTGP H SYVMLPV+PPK  +K++K
Sbjct:  464 PWRPWHSHDNKQPLTPGRIYELDIEIWPTCIVVPAGYRLALSVRGKDYEYSGGALELSNFAHPLNGCGPFLHDDPRDRPKKIFGGDVTLHTGPKHQSYVMLPVIPPKEGSKRRK 577          
BLAST of mRNA_L-digitata_M_contig99699.2.1 vs. uniprot
Match: A0A7C2YDR2_9PROT (CocE/NonD family hydrolase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YDR2_9PROT)

HSP 1 Score: 176 bits (447), Expect = 2.560e-50
Identity = 71/107 (66.36%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    1 PWRPWHSHDEKQPLKPGSIYELDIEIWPTCVVVPAGYRLALTVRGKDYVYSGEPLNLSNFAHPLDGCGPFLHDDPKDRPKKIFGGDVTVHTGPNHPSYVMLPVVPPK 321
            P+RP+H+HDEKQPL PG +YELDIEIWPTC+VVP GYR+ALT+RGKDY + G P +LSN  +P+ GCGPF+HDDP DRP +IF G VT+H GP +P++V+LP++PPK
Sbjct:  464 PYRPYHTHDEKQPLTPGEVYELDIEIWPTCIVVPPGYRVALTIRGKDYEHDGAPASLSNMKNPMRGCGPFVHDDPTDRPPEIFSGKVTLHVGPQYPAHVLLPIIPPK 570          
BLAST of mRNA_L-digitata_M_contig99699.2.1 vs. uniprot
Match: UPI0019315FF7 (Uncharacterized protein n=2 Tax=Micromonospora sp. STR1s_5 TaxID=2806099 RepID=UPI0019315FF7)

HSP 1 Score: 162 bits (411), Expect = 5.550e-49
Identity = 70/106 (66.04%), Postives = 87/106 (82.08%), Query Frame = 1
Query:    1 PWRPWHSHDEKQPLKPGSIYELDIEIWPTCVVVPAGYRLALTVRGKDYVY-SGEPLNLSNFAHPLDGCGPFLHDDPKDRPKKIFGGDVTVHTGPNHPSYVMLPVVP 315
            P+RP+H+HDEKQPL PG + ELDIEIWPTC+VVPAG+RL L+VRG+DYVY  G    LSNF + L GCGPFLHDDP DRP +IFGG  T+H GP+ P+Y++LP++P
Sbjct:   65 PYRPYHTHDEKQPLTPGEVVELDIEIWPTCIVVPAGHRLGLSVRGRDYVYPGGSGGKLSNFKNELTGCGPFLHDDPVDRPPEIFGGTTTLHFGPDKPAYLLLPIIP 170          
BLAST of mRNA_L-digitata_M_contig99699.2.1 vs. uniprot
Match: A0A1W2A2D8_9BURK (PepX_C domain-containing protein n=2 Tax=Polynucleobacter TaxID=44013 RepID=A0A1W2A2D8_9BURK)

HSP 1 Score: 171 bits (434), Expect = 2.350e-48
Identity = 71/109 (65.14%), Postives = 88/109 (80.73%), Query Frame = 1
Query:    1 PWRPWHSHDEKQPLKPGSIYELDIEIWPTCVVVPAGYRLALTVRGKDYVYSGEPLNLSNFAHPLDGCGPFLHDDPKDRPKKIFGGDVTVHTGPNHPSYVMLPVVPPKSA 327
            P+RPWHSHDEKQPL  G +YELD+EIWPTC+VVP GYR+ALT+RGKDY Y GE   LSN  +P+ GCGPF+HDD  DRP  IFGG+V + TGPN+PS +++PV+P K +
Sbjct:  474 PYRPWHSHDEKQPLVAGEVYELDVEIWPTCIVVPKGYRIALTIRGKDYEYDGEAAVLSNMKNPMTGCGPFMHDDETDRPPAIFGGEVKILTGPNYPSNLLIPVIPKKQS 582          
BLAST of mRNA_L-digitata_M_contig99699.2.1 vs. uniprot
Match: A0A536XNF9_9PROT (Peptidase S15 (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XNF9_9PROT)

HSP 1 Score: 164 bits (416), Expect = 2.380e-48
Identity = 69/106 (65.09%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 PWRPWHSHDEKQPLKPGSIYELDIEIWPTCVVVPAGYRLALTVRGKDYVYSGEPLNLSNFAHPLDGCGPFLHDDPKDRPKKIFGGDVTVHTGPNHPSYVMLPVVPP 318
            P+RP+H+HDEKQPL PG + ELDIEIWPTC+VVPAGYR+ALT+RGKDY + GE  +LSN  +P+ GCGPF+HDD  DRP  IF G V +H GP  PS ++LPV+PP
Sbjct:  177 PYRPFHAHDEKQPLSPGEVVELDIEIWPTCIVVPAGYRIALTIRGKDYEHGGEAASLSNMKNPMRGCGPFIHDDETDRPPAIFSGKVMLHFGPGRPSSLLLPVIPP 282          
BLAST of mRNA_L-digitata_M_contig99699.2.1 vs. uniprot
Match: A0A536S1Z1_9PROT (Peptidase S15 (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536S1Z1_9PROT)

HSP 1 Score: 160 bits (405), Expect = 3.650e-48
Identity = 65/106 (61.32%), Postives = 86/106 (81.13%), Query Frame = 1
Query:    4 WRPWHSHDEKQPLKPGSIYELDIEIWPTCVVVPAGYRLALTVRGKDYVYSGEPLNLSNFAHPLDGCGPFLHDDPKDRPKKIFGGDVTVHTGPNHPSYVMLPVVPPK 321
            +RP+H+H++K PL PG I ELD+EIWPTC+VVPAG+R+ALTVRGKDY + GE   LSN  +P+ GCGPFLHDDP DRP  +FGG  T+H+GP   ++++LP++PPK
Sbjct:   61 FRPFHTHEQKLPLTPGKIVELDVEIWPTCIVVPAGWRIALTVRGKDYEHQGEAATLSNMKNPMKGCGPFLHDDPSDRPLAVFGGKTTLHSGPARRAFLLLPIIPPK 166          
BLAST of mRNA_L-digitata_M_contig99699.2.1 vs. uniprot
Match: A0A2E7I555_9PROT (Peptidase S15 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E7I555_9PROT)

HSP 1 Score: 171 bits (432), Expect = 4.030e-48
Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 1
Query:    1 PWRPWHSHDEKQPLKPGSIYELDIEIWPTCVVVPAGYRLALTVRGKDYVYSG-----EPLNLSNFAHPLDGCGPFLHDDPKDRPKKIFGGDVTVHTGPNHPSYVMLPVVP 315
            P+ PWHSHDEKQPL+PGS+YELDI++ PT +VVPAGYRLALTVRGKDYV+ G     +P  LSNFA PL GCGPFLHDDP+DRPKKIF  +VT+H+GP   +Y+MLP++P
Sbjct:  465 PYWPWHSHDEKQPLRPGSVYELDIDLHPTGIVVPAGYRLALTVRGKDYVWPGAKTEDDPFTLSNFAKPLTGCGPFLHDDPRDRPKKIFDNNVTLHSGPVRAAYLMLPLIP 574          
BLAST of mRNA_L-digitata_M_contig99699.2.1 vs. uniprot
Match: A0A1F4BKL2_9PROT (Peptidase S15 n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BKL2_9PROT)

HSP 1 Score: 170 bits (430), Expect = 7.530e-48
Identity = 75/109 (68.81%), Postives = 92/109 (84.40%), Query Frame = 1
Query:    1 PWRPWHSHDEKQPLKPGSIYELDIEIWPTCVVVPAGYRLALTVRGKDYVYSGEP-LNLSNFAHPLDGCGPFLHDDPKDRPKKIFGGDVTVHTGPNHPSYVMLPVVPPKS 324
            P+RP+H+HDEKQPL+PG+I E D+EIWPT +VVPAG+R+ALTVRGKDY +       LSNF + L GCGPFLHDDP+DRP  IFGG VT+HTGPN+PSY++LPVVPPK+
Sbjct:  462 PYRPYHAHDEKQPLEPGAIVEADVEIWPTSIVVPAGHRIALTVRGKDYEWQKSTGARLSNFRNELLGCGPFLHDDPRDRPPAIFGGKVTLHTGPNYPSYILLPVVPPKN 570          
BLAST of mRNA_L-digitata_M_contig99699.2.1 vs. uniprot
Match: A0A848W855_9PROT (CocE/NonD family hydrolase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W855_9PROT)

HSP 1 Score: 169 bits (428), Expect = 1.100e-47
Identity = 75/107 (70.09%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    4 WRPWHSHDEKQPLKPGSIYELDIEIWPTCVVVPAGYRLALTVRGKDYVYS-GEPLNLSNFAHPLDGCGPFLHDDPKDRPKKIFGGDVTVHTGPNHPSYVMLPVVPPK 321
            W+P+H+HDEKQ L PG IYELDIEIWP+CVV+PAGYRLAL+VRGKDYVYS      LSN  +   G GPFLH+DP DRP+ IFGGDVT+HTGP+HP+++MLP+VPPK
Sbjct:  445 WQPYHTHDEKQLLTPGEIYELDIEIWPSCVVIPAGYRLALSVRGKDYVYSCATDHRLSNMRNAFTGVGPFLHNDPVDRPEAIFGGDVTLHTGPDHPAWLMLPIVPPK 551          
BLAST of mRNA_L-digitata_M_contig99699.2.1 vs. uniprot
Match: A0A3N5WIP6_9PROT (CocE/NonD family hydrolase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WIP6_9PROT)

HSP 1 Score: 168 bits (426), Expect = 2.980e-47
Identity = 69/107 (64.49%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 PWRPWHSHDEKQPLKPGSIYELDIEIWPTCVVVPAGYRLALTVRGKDYVYSGEPLNLSNFAHPLDGCGPFLHDDPKDRPKKIFGGDVTVHTGPNHPSYVMLPVVPPK 321
            P+RPWH+HD+KQPL PG++Y LDIEIWPTC+VVP GY +ALTVRG+DYV+ G    LSN  +P+ GCGPF HDD  DRP  +FGG VT+HTGP HP+ ++LPV+PP+
Sbjct:  467 PYRPWHTHDQKQPLTPGTVYALDIEIWPTCIVVPRGYIIALTVRGRDYVWDGAATTLSNMKNPMRGCGPFEHDDETDRPPAVFGGRVTLHTGPAHPATLLLPVIPPR 573          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99699.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7PGM8_9PROT2.200e-6582.46Peptidase S15 n=1 Tax=Rhodospirillaceae bacterium ... [more]
A0A7C2YDR2_9PROT2.560e-5066.36CocE/NonD family hydrolase n=1 Tax=Betaproteobacte... [more]
UPI0019315FF75.550e-4966.04Uncharacterized protein n=2 Tax=Micromonospora sp.... [more]
A0A1W2A2D8_9BURK2.350e-4865.14PepX_C domain-containing protein n=2 Tax=Polynucle... [more]
A0A536XNF9_9PROT2.380e-4865.09Peptidase S15 (Fragment) n=1 Tax=Betaproteobacteri... [more]
A0A536S1Z1_9PROT3.650e-4861.32Peptidase S15 (Fragment) n=1 Tax=Betaproteobacteri... [more]
A0A2E7I555_9PROT4.030e-4869.09Peptidase S15 n=1 Tax=Alphaproteobacteria bacteriu... [more]
A0A1F4BKL2_9PROT7.530e-4868.81Peptidase S15 n=1 Tax=Betaproteobacteria bacterium... [more]
A0A848W855_9PROT1.100e-4770.09CocE/NonD family hydrolase n=1 Tax=Alphaproteobact... [more]
A0A3N5WIP6_9PROT2.980e-4764.49CocE/NonD family hydrolase n=1 Tax=Betaproteobacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99699contigL-digitata_M_contig99699:604..951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1342299.Z947_120
PFAMsPepX_C,Peptidase_S15
Model size348
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K06978
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.18e-41
EggNOG OGsCOG2936@1|root,COG2936@2|Bacteria,1MVA8@1224|Proteobacteria,2TU0R@28211|Alphaproteobacteria
DescriptionHydrolase CocE NonD family
Cds size348
COG categoryE
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408656.5345619-CDS-L-digitata_M_contig99699:603..9511682408656.5345619-CDS-L-digitata_M_contig99699:603..951Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99699 604..951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99699.2.1prot_L-digitata_M_contig99699.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99699 604..951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99699.2.1

>prot_L-digitata_M_contig99699.2.1 ID=prot_L-digitata_M_contig99699.2.1|Name=mRNA_L-digitata_M_contig99699.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=116bp
PWRPWHSHDEKQPLKPGSIYELDIEIWPTCVVVPAGYRLALTVRGKDYVY
SGEPLNLSNFAHPLDGCGPFLHDDPKDRPKKIFGGDVTVHTGPNHPSYVM
LPVVPPKSAAKKKKQ*
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mRNA from alignment at L-digitata_M_contig99699:604..951-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99699.2.1 ID=mRNA_L-digitata_M_contig99699.2.1|Name=mRNA_L-digitata_M_contig99699.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=348bp|location=Sequence derived from alignment at L-digitata_M_contig99699:604..951- (Laminaria digitata LdigPH10_18mv male)
CCGTGGCGTCCGTGGCACAGCCATGACGAAAAGCAGCCCCTCAAGCCGGG CAGCATCTATGAACTGGATATTGAAATCTGGCCGACTTGCGTGGTTGTGC CCGCCGGATACCGGCTGGCGCTCACCGTGCGCGGCAAGGATTATGTCTAT TCCGGTGAGCCGCTAAACCTGTCGAACTTCGCCCATCCGCTTGATGGCTG CGGCCCCTTCCTGCATGACGATCCAAAGGACCGCCCGAAGAAAATCTTTG GGGGTGATGTGACAGTCCACACCGGTCCGAACCATCCCAGCTACGTGATG CTGCCGGTGGTGCCGCCGAAATCGGCTGCAAAGAAGAAAAAGCAGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig99699:604..951-

>mRNA_L-digitata_M_contig99699.2.1 ID=mRNA_L-digitata_M_contig99699.2.1|Name=mRNA_L-digitata_M_contig99699.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=348bp|location=Sequence derived from alignment at L-digitata_M_contig99699:604..951- (Laminaria digitata LdigPH10_18mv male)
CCGTGGCGTCCGTGGCACAGCCATGACGAAAAGCAGCCCCTCAAGCCGGG
CAGCATCTATGAACTGGATATTGAAATCTGGCCGACTTGCGTGGTTGTGC
CCGCCGGATACCGGCTGGCGCTCACCGTGCGCGGCAAGGATTATGTCTAT
TCCGGTGAGCCGCTAAACCTGTCGAACTTCGCCCATCCGCTTGATGGCTG
CGGCCCCTTCCTGCATGACGATCCAAAGGACCGCCCGAAGAAAATCTTTG
GGGGTGATGTGACAGTCCACACCGGTCCGAACCATCCCAGCTACGTGATG
CTGCCGGTGGTGCCGCCGAAATCGGCTGCAAAGAAGAAAAAGCAGTAG
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