mRNA_L-digitata_M_contig99669.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig99669.1.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 108 bits (271), Expect = 8.180e-26 Identity = 55/84 (65.48%), Postives = 70/84 (83.33%), Query Frame = 1
Query: 1 IKILVGVWQILAVFSSITGVEFPASYALFLSWINVLNFDLGYIVSASCVLPSVNFYQSLLATTLGPFVAAAGLMLTYRMAKRRS 252
+KILV VWQIL+VF SIT V+FP +YA FLSWI++L+FDLG+++SASCV P ++FYQSLL TTLGP A L+LTY +AKRR+
Sbjct: 1111 LKILVVVWQILSVFPSITAVDFPPAYARFLSWIDMLSFDLGHVLSASCVFPVMDFYQSLLLTTLGPLGVAMVLVLTYWIAKRRA 1194
BLAST of mRNA_L-digitata_M_contig99669.1.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 105 bits (261), Expect = 1.840e-24 Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 1
Query: 1 IKILVGVWQILAVFSSITGVEFPASYALFLSWINVLNFDLGYIVSASCVLPSVNFYQSLLATTLGPFVAAAGLMLTYRMAKRRS 252
IKILV VWQIL+VF SIT V+FP +YA FLSWIN+L+FDL +++SASCV P ++FYQ LL TTL P A L+LTY MAKRR+
Sbjct: 1118 IKILVVVWQILSVFPSITAVDFPPAYARFLSWINMLSFDLEHVLSASCVFPVMDFYQRLLVTTLVPLGVAMVLVLTYWMAKRRA 1201
BLAST of mRNA_L-digitata_M_contig99669.1.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI) HSP 1 Score: 102 bits (254), Expect = 1.610e-23 Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 1
Query: 1 IKILVGVWQILAVFSSITGVEFPASYALFLSWINVLNFDLGYIVSASCVLPSVNFYQSLLATTLGPFVAAAGLMLTYRMAKRRS 252
+KILV VWQIL VF SITGV+FP SY+ FLSWI+V+N D+G++ +ASC+LPSV+FYQ LL TTL P L+LT+ MAK R+
Sbjct: 797 LKILVVVWQILTVFPSITGVQFPPSYSRFLSWIDVVNLDVGHVFTASCLLPSVSFYQRLLLTTLTPIGLGCVLVLTHWMAKERA 880
BLAST of mRNA_L-digitata_M_contig99669.1.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE) HSP 1 Score: 101 bits (251), Expect = 4.120e-23 Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 1
Query: 1 IKILVGVWQILAVFSSITGVEFPASYALFLSWINVLNFDLGYIVSASCVLPSVNFYQSLLATTLGPFVAAAGLMLTYRMAKRRS 252
+KILV VWQIL VF SITGV+FP SY+ FLSW++V+N D+G + +ASC+LPSV+FYQ LL TTL P L+LT+ MAK+R+
Sbjct: 1139 LKILVVVWQILTVFPSITGVQFPPSYSRFLSWVDVVNLDVGQVFTASCLLPSVSFYQRLLLTTLTPIGLGCVLVLTHWMAKQRA 1222
BLAST of mRNA_L-digitata_M_contig99669.1.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI) HSP 1 Score: 100 bits (250), Expect = 5.630e-23 Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 1
Query: 1 IKILVGVWQILAVFSSITGVEFPASYALFLSWINVLNFDLGYIVSASCVLPSVNFYQSLLATTLGPFVAAAGLMLTYRMAKR 246
+KILV VWQIL VF SITGV++P SY+ FLSWI+V+NFD+G+I SASC LP + FY+ LL TTL P L++TY MAKR
Sbjct: 1194 LKILVVVWQILTVFPSITGVDYPPSYSRFLSWIDVVNFDVGHIFSASCALPFLTFYERLLLTTLAPIGLGGVLVVTYWMAKR 1275
BLAST of mRNA_L-digitata_M_contig99669.1.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 5.950e-21 Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 1
Query: 1 IKILVGVWQILAVFSSITGVEFPASYALFLSWINVLNFDLGYIVSASCVLPSVNFYQSLLATTLGPFVAAAGLMLTYRMAKRRS 252
+KILV VWQIL VF SITG EFP +YA FLS I+ +N D+G I S +C+LP V+FYQ LL TT+ P A L+LTY MAK R+
Sbjct: 623 LKILVVVWQILTVFPSITGAEFPPAYAQFLSIIDFINLDIGSIFSGTCILPRVSFYQRLLVTTVTPIGLAGVLLLTYTMAKSRA 706
BLAST of mRNA_L-digitata_M_contig99669.1.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 2.080e-20 Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 1
Query: 1 IKILVGVWQILAVFSSITGVEFPASYALFLSWINVLNFDLGYIVSASCVLPSVNFYQSLLATTLGPFVAAAGLMLTYRMAKRRS 252
+KILV VWQIL VF +ITG EFP +YA FLS I+ +N D+G I S +C+LP V+FYQ LL TT+ P A L+LTY MAK R+
Sbjct: 1128 LKILVVVWQILTVFPTITGAEFPPAYAQFLSVIDFINLDIGSIFSGTCILPRVSFYQRLLVTTVTPIGLAGVLLLTYTMAKGRA 1211
BLAST of mRNA_L-digitata_M_contig99669.1.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 5.320e-15 Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 1 IKILVGVWQILAVFSSITGVEFPASYALFLSWINVLNFDLGYIVSASCVLPSVNFYQSLLATTLGPFVAAAGLMLTYRMAKRRS 252
IKI+V WQI+ FSS+ V +P Y FL+ +NV+NFDLG+++S SC++ VNFY L TT+GP V GL TY +++ R+
Sbjct: 740 IKIVVVAWQIVTQFSSVVNVVYPDIYESFLAVLNVVNFDLGFLLSVSCIV-DVNFYGRLFFTTVGPLVVFGGLAATYAISRSRN 822
BLAST of mRNA_L-digitata_M_contig99669.1.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 4.780e-14 Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 1
Query: 1 IKILVGVWQILAVFSSITGVEFPASYALFLSWINVLNFDLGYIVSASCVLPSVNFYQSLLATTLGPFVAAAGLMLTYRMAKRRS 252
+KI+V VWQI+ +S + GVE+P +Y FLS ++V+N DLG+I+S +CV + NFY LL T+GP + L TY +A+RR+
Sbjct: 720 VKIVVVVWQIVTQYSDVAGVEYPGAYQDFLSVVDVVNLDLGFILSFACVYDT-NFYDRLLMATIGPVLVLGLLGCTYLVARRRN 802
BLAST of mRNA_L-digitata_M_contig99669.1.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 8.050e-14 Identity = 39/84 (46.43%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 1 IKILVGVWQILAVFSSITGVEFPASYALFLSWINVLNFDLGYIVSASCVLPSVNFYQSLLATTLGPFVAAAGLMLTYRMAKRRS 252
IKI++ WQI+ FSS+ V +P Y FLS +N++NF+ G+I+SASCV+ + NFY LL T+GP V L LTY +++ R+
Sbjct: 64 IKIVLVAWQIVTQFSSVVNVVYPDVYEKFLSILNLVNFNFGFILSASCVVDT-NFYGRLLFATIGPLVVLGALALTYAVSRSRN 146 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99669.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig99669.1.1 >prot_L-digitata_M_contig99669.1.1 ID=prot_L-digitata_M_contig99669.1.1|Name=mRNA_L-digitata_M_contig99669.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=84bp IKILVGVWQILAVFSSITGVEFPASYALFLSWINVLNFDLGYIVSASCVLback to top mRNA from alignment at L-digitata_M_contig99669:324..575- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig99669.1.1 ID=mRNA_L-digitata_M_contig99669.1.1|Name=mRNA_L-digitata_M_contig99669.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=252bp|location=Sequence derived from alignment at L-digitata_M_contig99669:324..575- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig99669:324..575- >mRNA_L-digitata_M_contig99669.1.1 ID=mRNA_L-digitata_M_contig99669.1.1|Name=mRNA_L-digitata_M_contig99669.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=252bp|location=Sequence derived from alignment at L-digitata_M_contig99669:324..575- (Laminaria digitata LdigPH10_18mv male)back to top |