mRNA_L-digitata_M_contig99654.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99654.1.1
Unique NamemRNA_L-digitata_M_contig99654.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99654.1.1 vs. uniprot
Match: A0A6H5L308_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L308_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.620e-9
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:    1 EGVMMHTETLVKHALHEGLAITLCINK 81
            EGVMMHTETLVKHALHEGLAITLCINK
Sbjct:  254 EGVMMHTETLVKHALHEGLAITLCINK 280
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BLAST of mRNA_L-digitata_M_contig99654.1.1 vs. uniprot
Match: UPI0009E3DA27 (116 kDa U5 small nuclear ribonucleoprotein component-like n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E3DA27)

HSP 1 Score: 48.5 bits (114), Expect = 2.170e-5
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 EGVMMHTETLVKHALHEGLAITLCINKARAGQRR 102
            EGVM++TE L+KHA+ E LA+T+CINK R+G  R
Sbjct:  232 EGVMLNTERLLKHAVQERLAVTICINKVRSGVTR 265
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BLAST of mRNA_L-digitata_M_contig99654.1.1 vs. uniprot
Match: UPI001EB03F40 (116 kDa U5 small nuclear ribonucleoprotein component-like n=3 Tax=Gastropoda TaxID=6448 RepID=UPI001EB03F40)

HSP 1 Score: 48.5 bits (114), Expect = 2.170e-5
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 EGVMMHTETLVKHALHEGLAITLCINK 81
            EGVM++TE L+KHALHE LAIT+CINK
Sbjct:  233 EGVMLNTERLIKHALHEKLAITICINK 259
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99654.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L308_9PHAE4.620e-9100.00Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
UPI0009E3DA272.170e-561.76116 kDa U5 small nuclear ribonucleoprotein compone... [more]
UPI001EB03F402.170e-577.78116 kDa U5 small nuclear ribonucleoprotein compone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99654contigL-digitata_M_contig99654:4..120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIZ9
Preferred nameEF-TU
PFAMsEFG_C,EFG_II,EFG_IV,EFTUD2,GTP_EFTU,GTP_EFTU_D2
Model size117
Max annot lvl2759|Eukaryota
KEGG koko:K12852
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000166,GO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000974,GO:0001672,GO:0001882,GO:0001883,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009506,GO:0009790,GO:0009791,GO:0009793,GO:0009908,GO:0009987,GO:0010154,GO:0010467,GO:0010847,GO:0015030,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030312,GO:0030532,GO:0031445,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033043,GO:0033044,GO:0034622,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043900,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045694,GO:0046483,GO:0046540,GO:0048316,GO:0048367,GO:0048437,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051239,GO:0055044,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090567,GO:0097159,GO:0097367,GO:0097525,GO:0097526,GO:0099402,GO:0120114,GO:1901265,GO:1901360,GO:1901363,GO:1902275,GO:1902494,GO:1902802,GO:1990904,GO:2000026,GO:2000241
Exons1
Evalue5.26e-08
EggNOG OGsCOG0480@1|root,KOG0468@2759|Eukaryota
DescriptionGTPase activity
Cds size108
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408655.8673308-UTR-L-digitata_M_contig99654:3..121682408655.8673308-UTR-L-digitata_M_contig99654:3..12Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig99654 4..12 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408655.8800185-CDS-L-digitata_M_contig99654:12..1201682408655.8800185-CDS-L-digitata_M_contig99654:12..120Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99654 13..120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99654.1.1prot_L-digitata_M_contig99654.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99654 13..120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99654.1.1

>prot_L-digitata_M_contig99654.1.1 ID=prot_L-digitata_M_contig99654.1.1|Name=mRNA_L-digitata_M_contig99654.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=36bp
MMHTETLVKHALHEGLAITLCINKARAGQRRCLSW*
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mRNA from alignment at L-digitata_M_contig99654:4..120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99654.1.1 ID=mRNA_L-digitata_M_contig99654.1.1|Name=mRNA_L-digitata_M_contig99654.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=117bp|location=Sequence derived from alignment at L-digitata_M_contig99654:4..120+ (Laminaria digitata LdigPH10_18mv male)
GAGGGCGTGATGATGCACACCGAGACGCTCGTCAAGCACGCGCTGCACGA
GGGGTTGGCCATCACCCTTTGCATCAACAAGGCGAGAGCAGGGCAGCGCC
GTTGCCTGTCATGGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig99654:4..120+

>mRNA_L-digitata_M_contig99654.1.1 ID=mRNA_L-digitata_M_contig99654.1.1|Name=mRNA_L-digitata_M_contig99654.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=108bp|location=Sequence derived from alignment at L-digitata_M_contig99654:4..120+ (Laminaria digitata LdigPH10_18mv male)
ATGATGCACACCGAGACGCTCGTCAAGCACGCGCTGCACGAGGGGTTGGC
CATCACCCTTTGCATCAACAAGGCGAGAGCAGGGCAGCGCCGTTGCCTGT
CATGGTAG
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