mRNA_L-digitata_M_contig99634.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99634.1.1
Unique NamemRNA_L-digitata_M_contig99634.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99634.1.1 vs. uniprot
Match: A0A6H5JJ25_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ25_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.130e-42
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = 1
Query:   61 DLEILDAGDQTEIGEKGVNLSGGQQQRVSLARAVYADADIVLLDDVLSAVDAHVGKHIFDKCIRKMLKLNTVVLVTHQMAMSAPYA 318
            DLEILD+GDQTEIGEKGVNLSGGQQQRVSLARAVYAD+DIVLLDDVLSAVDAHVGKHIFDKCIRK+LKL TVVLVTHQ+ MSAPYA
Sbjct:  833 DLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCIRKVLKLKTVVLVTHQVNMSAPYA 918          
BLAST of mRNA_L-digitata_M_contig99634.1.1 vs. uniprot
Match: D7G0B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B6_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 3.920e-42
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 1
Query:   61 DLEILDAGDQTEIGEKGVNLSGGQQQRVSLARAVYADADIVLLDDVLSAVDAHVGKHIFDKCIRKMLKLNTVVLVTHQMAMSAPYA 318
            DLEILD+GDQTEIGEKGVNLSGGQQQRVSLARAVYAD+DIVLLDDVLSAVDAHVGKHIFDKCIRK+LK  TVVLVTHQ+ MSAPYA
Sbjct:  807 DLEILDSGDQTEIGEKGVNLSGGQQQRVSLARAVYADSDIVLLDDVLSAVDAHVGKHIFDKCIRKVLKFKTVVLVTHQVNMSAPYA 892          
BLAST of mRNA_L-digitata_M_contig99634.1.1 vs. uniprot
Match: A0A6H5K4L0_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4L0_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 4.840e-34
Identity = 66/86 (76.74%), Postives = 76/86 (88.37%), Query Frame = 1
Query:   61 DLEILDAGDQTEIGEKGVNLSGGQQQRVSLARAVYADADIVLLDDVLSAVDAHVGKHIFDKCIRKMLKLNTVVLVTHQMAMSAPYA 318
            DL++L+AGDQTEIGEKG+NLSGGQQQRVSLARAVYA AD+ LLDDVLSAVDAHVG+HIF  C+R ML+   VVLVTHQ+ M+A YA
Sbjct:  821 DLDLLEAGDQTEIGEKGINLSGGQQQRVSLARAVYAQADVYLLDDVLSAVDAHVGEHIFKHCVRGMLRDKAVVLVTHQVPMTARYA 906          
BLAST of mRNA_L-digitata_M_contig99634.1.1 vs. uniprot
Match: A0A7J7K4Z3_BUGNE (ABC transporter domain-containing protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7K4Z3_BUGNE)

HSP 1 Score: 120 bits (300), Expect = 6.950e-33
Identity = 59/79 (74.68%), Postives = 69/79 (87.34%), Query Frame = 1
Query:   61 DLEILDAGDQTEIGEKGVNLSGGQQQRVSLARAVYADADIVLLDDVLSAVDAHVGKHIFDKCIRKMLKLNTVVLVTHQM 297
            DLE+L AGDQTEIGE+GVNLSGGQ+QRVSLARAVY+D ++VLLDD LSAVDAHVG+HIF  CI  +LK  TV+ VTHQ+
Sbjct:   12 DLELLPAGDQTEIGERGVNLSGGQKQRVSLARAVYSDTELVLLDDPLSAVDAHVGQHIFTHCITGLLKNKTVLFVTHQL 90          
BLAST of mRNA_L-digitata_M_contig99634.1.1 vs. uniprot
Match: UPI0003314E2B (ATP-binding cassette sub-family C member 11 n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI0003314E2B)

HSP 1 Score: 129 bits (324), Expect = 1.470e-32
Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = 1
Query:   43 CNGNLQDLEILDAGDQTEIGEKGVNLSGGQQQRVSLARAVYADADIVLLDDVLSAVDAHVGKHIFDKCIRKMLKLNTVVLVTHQM 297
            C   +QDLEIL  GD TEIGE+G+N+SGGQ+QRVSLARAVY+D DI+LLDD LSAVDAHVGKHIF++CI+KML+  TVVLVTHQ+
Sbjct:  612 CCSLIQDLEILPFGDMTEIGERGINISGGQKQRVSLARAVYSDRDILLLDDPLSAVDAHVGKHIFEQCIKKMLQGKTVVLVTHQL 696          
BLAST of mRNA_L-digitata_M_contig99634.1.1 vs. uniprot
Match: A0A401PUW7_SCYTO (ABC transporter domain-containing protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401PUW7_SCYTO)

HSP 1 Score: 122 bits (305), Expect = 1.050e-31
Identity = 61/99 (61.62%), Postives = 80/99 (80.81%), Query Frame = 1
Query:   10 ERSKYQNSSTSCNGNLQDLEILDAGDQTEIGEKGVNLSGGQQQRVSLARAVYADADIVLLDDVLSAVDAHVGKHIFDKCIRKMLKLNTVVLVTHQMAMS 306
            +  +Y+N   +C   LQDL IL  GD TEIG++G+NLSGGQ+QR+S+ARAVY+D DI LLDD LSAVDAHVGKHIF++C++K+L+  TV+LVTHQ+  S
Sbjct:   63 DEGRYKNVLEAC-CLLQDLAILPFGDLTEIGDRGLNLSGGQKQRISIARAVYSDQDIYLLDDPLSAVDAHVGKHIFEQCVKKILRGKTVILVTHQLQCS 160          
BLAST of mRNA_L-digitata_M_contig99634.1.1 vs. uniprot
Match: A0A7S3UXE0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXE0_HETAK)

HSP 1 Score: 125 bits (315), Expect = 2.300e-31
Identity = 66/100 (66.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:    1 RSIERSKYQNSSTSCNGNLQDLEILDAGDQTEIGEKGVNLSGGQQQRVSLARAVYADADIVLLDDVLSAVDAHVGKHIFDKCIRKMLKLNTVVLVTHQMA 300
            R     KY+++ ++C  N +DL+ILD GD TEIGE+G+NLSGGQQQR+SLARAVYADADI LLDDVLSAVDAHVG HI   CI+  L+  T VLVTHQ+A
Sbjct:  114 REFSHFKYRSTISACALN-RDLQILDGGDLTEIGERGINLSGGQQQRISLARAVYADADIYLLDDVLSAVDAHVGDHILKNCIQGALRAKTRVLVTHQVA 212          
BLAST of mRNA_L-digitata_M_contig99634.1.1 vs. uniprot
Match: A0A2K6ES78_PROCO (ATP binding cassette subfamily C member 11 n=3 Tax=Propithecus coquereli TaxID=379532 RepID=A0A2K6ES78_PROCO)

HSP 1 Score: 125 bits (315), Expect = 2.400e-31
Identity = 63/96 (65.62%), Postives = 81/96 (84.38%), Query Frame = 1
Query:   10 ERSKYQNSSTSCNGNLQDLEILDAGDQTEIGEKGVNLSGGQQQRVSLARAVYADADIVLLDDVLSAVDAHVGKHIFDKCIRKMLKLNTVVLVTHQM 297
            ++++Y  +   C+ N QDLE+L  GD TEIGE+GVNLSGGQ+QR+SLARAVYA+ ++ LLDD LSAVDAHVGKHIF++CI+KMLK  T+VLVTHQ+
Sbjct:  600 DKARYLQALHCCSLN-QDLELLPFGDMTEIGERGVNLSGGQRQRISLARAVYANRELYLLDDPLSAVDAHVGKHIFEECIKKMLKDKTIVLVTHQL 694          
BLAST of mRNA_L-digitata_M_contig99634.1.1 vs. uniprot
Match: A0A2A9MIS2_9APIC (Uncharacterized protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MIS2_9APIC)

HSP 1 Score: 125 bits (313), Expect = 4.520e-31
Identity = 61/88 (69.32%), Postives = 73/88 (82.95%), Query Frame = 1
Query:   55 LQDLEILDAGDQTEIGEKGVNLSGGQQQRVSLARAVYADADIVLLDDVLSAVDAHVGKHIFDKCIRKMLKLNTVVLVTHQMAMSAPYA 318
            L DL +L AGDQTEIGEKG+NLSGGQ+QRV+LARAVY  AD+ LLDD LSAVDAHV  HIF+KCIR +L+  TVVLVTH++  + P+A
Sbjct: 1118 LPDLALLPAGDQTEIGEKGINLSGGQKQRVALARAVYVQADVYLLDDCLSAVDAHVAAHIFEKCIRGLLRNRTVVLVTHKLTTTLPHA 1205          
BLAST of mRNA_L-digitata_M_contig99634.1.1 vs. uniprot
Match: A0A1S3KYC7_SALSA (multidrug resistance-associated protein 9-like isoform X1 n=2 Tax=Salmo salar TaxID=8030 RepID=A0A1S3KYC7_SALSA)

HSP 1 Score: 119 bits (299), Expect = 8.730e-31
Identity = 57/81 (70.37%), Postives = 72/81 (88.89%), Query Frame = 1
Query:   55 LQDLEILDAGDQTEIGEKGVNLSGGQQQRVSLARAVYADADIVLLDDVLSAVDAHVGKHIFDKCIRKMLKLNTVVLVTHQM 297
            + DL IL  GD+TEIGE+G+NLSGGQ+QRVSLARAVY++ DI+LLDD LSAVDAHVGKHIF++CI+K LK  +++LVTHQ+
Sbjct:   53 IPDLAILPYGDKTEIGERGLNLSGGQKQRVSLARAVYSNNDIILLDDPLSAVDAHVGKHIFEECIKKTLKGKSIILVTHQL 133          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99634.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ25_9PHAE1.130e-4293.02ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G0B6_ECTSI3.920e-4291.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4L0_9PHAE4.840e-3476.74ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7J7K4Z3_BUGNE6.950e-3374.68ABC transporter domain-containing protein n=1 Tax=... [more]
UPI0003314E2B1.470e-3274.12ATP-binding cassette sub-family C member 11 n=1 Ta... [more]
A0A401PUW7_SCYTO1.050e-3161.62ABC transporter domain-containing protein (Fragmen... [more]
A0A7S3UXE0_HETAK2.300e-3166.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2K6ES78_PROCO2.400e-3165.63ATP binding cassette subfamily C member 11 n=3 Tax... [more]
A0A2A9MIS2_9APIC4.520e-3169.32Uncharacterized protein n=1 Tax=Besnoitia besnoiti... [more]
A0A1S3KYC7_SALSA8.730e-3170.37multidrug resistance-associated protein 9-like iso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99634contigL-digitata_M_contig99634:192..680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G0B6
PFAMsABC_membrane,ABC_tran
Model size321
Max annot lvl2759|Eukaryota
KEGG koko:K05665
KEGG TC3.A.1.208.8
KEGG Pathwayko01523,ko02010,ko04071,ko04977,ko05206,map01523,map02010,map04071,map04977,map05206
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.43e-43
EggNOG OGsCOG1132@1|root,KOG0054@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size321
COG categoryV
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408655.575041-CDS-L-digitata_M_contig99634:191..2571682408655.575041-CDS-L-digitata_M_contig99634:191..257Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99634 192..257 -
1682408655.5872858-CDS-L-digitata_M_contig99634:425..6801682408655.5872858-CDS-L-digitata_M_contig99634:425..680Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99634 426..680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99634.1.1prot_L-digitata_M_contig99634.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99634 192..680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99634.1.1

>prot_L-digitata_M_contig99634.1.1 ID=prot_L-digitata_M_contig99634.1.1|Name=mRNA_L-digitata_M_contig99634.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=107bp
RSIERSKYQNSSTSCNGNLQDLEILDAGDQTEIGEKGVNLSGGQQQRVSL
ARAVYADADIVLLDDVLSAVDAHVGKHIFDKCIRKMLKLNTVVLVTHQMA
MSAPYA*
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mRNA from alignment at L-digitata_M_contig99634:192..680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99634.1.1 ID=mRNA_L-digitata_M_contig99634.1.1|Name=mRNA_L-digitata_M_contig99634.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=489bp|location=Sequence derived from alignment at L-digitata_M_contig99634:192..680- (Laminaria digitata LdigPH10_18mv male)
CGAAGTATCGAAAGATCGAAATATCAAAACAGTTCAACTTCGTGCAATGG AAACCTTCAGGACCTCGAGATCCTGGACGCCGGGGACCAGACGGAGATAG GCGAGAAAGGAGTAAACCTTTCGGGGGGGCAGCAGCAGCGGGTTAGCCTA GCGAGGGCGGTGTACGCGGACGCCGACATCGTGCTGCTGGACGACGTCCT GAGCGCTGTCGACGCGCATGTGGGCAAGCACATCTTCGACAAGTGTATCA GAAAGGTAAGAGTATGATATCGGTTCGGTTCGGTTCGGTTCGGTTCGGTT CGGTTCGGTTCGGTTCGGTTCGGTTTGGTTTGGTTTGGTTCTGTCCAATT TATTTCACTTCGAAAAAATCGCCTCTAATCCCCCCCCCCCCCCGTTTCGA CCCCTTTTTTTATGCCTTCGAAGATGTTGAAATTGAACACGGTGGTGTTG GTTACCCACCAGATGGCCATGTCGGCTCCTTACGCGTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99634:192..680-

>mRNA_L-digitata_M_contig99634.1.1 ID=mRNA_L-digitata_M_contig99634.1.1|Name=mRNA_L-digitata_M_contig99634.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=321bp|location=Sequence derived from alignment at L-digitata_M_contig99634:192..680- (Laminaria digitata LdigPH10_18mv male)
CGAAGTATCGAAAGATCGAAATATCAAAACAGTTCAACTTCGTGCAATGG
AAACCTTCAGGACCTCGAGATCCTGGACGCCGGGGACCAGACGGAGATAG
GCGAGAAAGGAGTAAACCTTTCGGGGGGGCAGCAGCAGCGGGTTAGCCTA
GCGAGGGCGGTGTACGCGGACGCCGACATCGTGCTGCTGGACGACGTCCT
GAGCGCTGTCGACGCGCATGTGGGCAAGCACATCTTCGACAAGTGTATCA
GAAAGATGTTGAAATTGAACACGGTGGTGTTGGTTACCCACCAGATGGCC
ATGTCGGCTCCTTACGCGTAA
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