mRNA_L-digitata_M_contig99612.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99612.1.1
Unique NamemRNA_L-digitata_M_contig99612.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99612.1.1 vs. uniprot
Match: A0A2D8PTT8_9PROT (Transcriptional regulator MntR n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PTT8_9PROT)

HSP 1 Score: 275 bits (704), Expect = 4.000e-93
Identity = 140/156 (89.74%), Postives = 148/156 (94.87%), Query Frame = 1
Query:    1 MSGKLKIDPSDKRPPVAPVLPEPHKQADHHRQVRAARQTEVMEDYVELIADLIDSTGEARSVDIAKRLGVTTPTVARMIGRLKETGWIETQPYRAIFLTEDGRRVAEASRRRHQIVVEFLTAIGVSEEIARADAEGLEHHVSEETLAAFERCLKGR 468
            M GKLKIDPSDKRPPVAPVLPEP KQADHHRQVRAARQTE+MEDYVELIADLID+TGEARSVDIAKRLGVTTPTVARMIGRLKE GWIE QPYRAIFLT++GRR+AEASRRRHQ+VV FLTAIGVSEEIARADAEG+EHHVSEETLAAFE  L+ R
Sbjct:    1 MPGKLKIDPSDKRPPVAPVLPEPDKQADHHRQVRAARQTEIMEDYVELIADLIDATGEARSVDIAKRLGVTTPTVARMIGRLKEAGWIEAQPYRAIFLTDEGRRIAEASRRRHQVVVTFLTAIGVSEEIARADAEGIEHHVSEETLAAFESFLRSR 156          
BLAST of mRNA_L-digitata_M_contig99612.1.1 vs. uniprot
Match: A0A2D8G6J4_9PROT (Transcriptional regulator MntR n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G6J4_9PROT)

HSP 1 Score: 259 bits (663), Expect = 7.110e-87
Identity = 133/154 (86.36%), Postives = 142/154 (92.21%), Query Frame = 1
Query:    1 MSGKLKIDPSDKRPPVAPVLPEPHKQADHHRQVRAARQTEVMEDYVELIADLIDSTGEARSVDIAKRLGVTTPTVARMIGRLKETGWIETQPYRAIFLTEDGRRVAEASRRRHQIVVEFLTAIGVSEEIARADAEGLEHHVSEETLAAFERCLK 462
            M GKLKIDP+D RPPVAPVLPEP KQADHHRQVRAARQTEVMEDYVELIADLIDSTGEARSVDIA RLGVTTPTVARMIGRLK+  WIE +PYR IFLTE+GR++AEASRRRHQIVVEFLT+IGV EEIARADAEG+EHHVS+ETL AFE  LK
Sbjct:    1 MPGKLKIDPADDRPPVAPVLPEPDKQADHHRQVRAARQTEVMEDYVELIADLIDSTGEARSVDIAARLGVTTPTVARMIGRLKDAEWIEARPYRTIFLTEEGRKIAEASRRRHQIVVEFLTSIGVREEIARADAEGIEHHVSDETLIAFESYLK 154          
BLAST of mRNA_L-digitata_M_contig99612.1.1 vs. uniprot
Match: A0A2S6Q808_9PROT (Transcriptional regulator MntR n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6Q808_9PROT)

HSP 1 Score: 259 bits (661), Expect = 1.430e-86
Identity = 134/154 (87.01%), Postives = 141/154 (91.56%), Query Frame = 1
Query:    1 MSGKLKIDPSDKRPPVAPVLPEPHKQADHHRQVRAARQTEVMEDYVELIADLIDSTGEARSVDIAKRLGVTTPTVARMIGRLKETGWIETQPYRAIFLTEDGRRVAEASRRRHQIVVEFLTAIGVSEEIARADAEGLEHHVSEETLAAFERCLK 462
            M GKLKIDP D RPP+APVLPEP KQADHHRQVRAARQTEVMEDYVELIADLIDSTGEARSVDIA+RLGVTTPTVARMI RLKE  WIE +PYRAIFLT +GRR+AEASRRRHQIVVEFLTAIGVSEEIARADAEG+EHHVSEETL A E  L+
Sbjct:    1 MPGKLKIDPVDDRPPIAPVLPEPDKQADHHRQVRAARQTEVMEDYVELIADLIDSTGEARSVDIAERLGVTTPTVARMIQRLKEAEWIEARPYRAIFLTREGRRIAEASRRRHQIVVEFLTAIGVSEEIARADAEGIEHHVSEETLTALENYLQ 154          
BLAST of mRNA_L-digitata_M_contig99612.1.1 vs. uniprot
Match: A0A6L3B1Z6_AZOBR (Transcriptional regulator MntR n=1 Tax=Azospirillum brasilense TaxID=192 RepID=A0A6L3B1Z6_AZOBR)

HSP 1 Score: 171 bits (432), Expect = 6.250e-52
Identity = 89/137 (64.96%), Postives = 108/137 (78.83%), Query Frame = 1
Query:   58 LPEPHKQADHHRQVRAARQTEVMEDYVELIADLIDSTGEARSVDIAKRLGVTTPTVARMIGRLKETGWIETQPYRAIFLTEDGRRVAEASRRRHQIVVEFLTAIGVSEEIARADAEGLEHHVSEETLAAFERCLKGR 468
            +P+  +QA + ++VR A QTEV EDYVELIADLID+TGEAR+ DIA+RLGV  PTV + I RL+  G + TQPYR+IFLT+ GR +AE SR+RH IVV FL  IGVSEE A  DAEG+EHHVSEETLAAFER ++ R
Sbjct:    1 MPDADRQAANFQRVREAHQTEVAEDYVELIADLIDTTGEARAADIARRLGVAHPTVVKTIARLQRDGLVATQPYRSIFLTDAGRAMAERSRQRHAIVVGFLKTIGVSEETAHRDAEGIEHHVSEETLAAFERIIQSR 137          
BLAST of mRNA_L-digitata_M_contig99612.1.1 vs. uniprot
Match: A0A7C1S5F2_9HYPH (Transcriptional regulator MntR n=3 Tax=root TaxID=1 RepID=A0A7C1S5F2_9HYPH)

HSP 1 Score: 171 bits (433), Expect = 7.310e-52
Identity = 87/139 (62.59%), Postives = 109/139 (78.42%), Query Frame = 1
Query:   52 PVLPEPHKQADHHRQVRAARQTEVMEDYVELIADLIDSTGEARSVDIAKRLGVTTPTVARMIGRLKETGWIETQPYRAIFLTEDGRRVAEASRRRHQIVVEFLTAIGVSEEIARADAEGLEHHVSEETLAAFERCLKGR 468
            P LP+  +QA + ++VR   Q EV EDYVELIADLIDSTGEAR+VDIA+RLGV   TV + I RL+  G + +QPYRA+FLTE GR++A  SRRRH++VV FL AIG+S E A+ DAEG+EHHVSEETLAAFER ++ +
Sbjct:   13 PALPDAEQQAANFQRVREVHQQEVAEDYVELIADLIDSTGEARAVDIARRLGVANTTVVKTIARLQRDGLVSSQPYRAVFLTEAGRKMAVRSRRRHELVVSFLRAIGISNETAQRDAEGIEHHVSEETLAAFERVVRAK 151          
BLAST of mRNA_L-digitata_M_contig99612.1.1 vs. uniprot
Match: A0A6N7FCG9_9PROT (Transcriptional regulator MntR n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FCG9_9PROT)

HSP 1 Score: 169 bits (429), Expect = 3.470e-51
Identity = 82/129 (63.57%), Postives = 108/129 (83.72%), Query Frame = 1
Query:   76 QADHHRQVRAARQTEVMEDYVELIADLIDSTGEARSVDIAKRLGVTTPTVARMIGRLKETGWIETQPYRAIFLTEDGRRVAEASRRRHQIVVEFLTAIGVSEEIARADAEGLEHHVSEETLAAFERCLK 462
            QA HHR+ R A++TE++EDYVELIADLI+  GEAR+V+I++RLGVT  TV +M+ RLK+   + T+PYRAIFLT++GRR+AE SRRRHQI+V FL A+GV E+ ARADAEG+EH+ S ETLAAF+R ++
Sbjct:   30 QAQHHRRTRLAKETEIVEDYVELIADLIEQCGEARAVEISRRLGVTNATVNKMVSRLKQMELVTTEPYRAIFLTDEGRRIAETSRRRHQIIVAFLQAVGVPEDAARADAEGIEHYCSPETLAAFQRFVE 158          
BLAST of mRNA_L-digitata_M_contig99612.1.1 vs. uniprot
Match: A0A2U1WVQ2_9PROT (Transcriptional regulator MntR n=2 Tax=Azospirillum sp. TSO22-1 TaxID=716789 RepID=A0A2U1WVQ2_9PROT)

HSP 1 Score: 167 bits (422), Expect = 2.350e-50
Identity = 88/134 (65.67%), Postives = 106/134 (79.10%), Query Frame = 1
Query:   58 LPEPHKQADHHRQVRAARQTEVMEDYVELIADLIDSTGEARSVDIAKRLGVTTPTVARMIGRLKETGWIETQPYRAIFLTEDGRRVAEASRRRHQIVVEFLTAIGVSEEIARADAEGLEHHVSEETLAAFERCL 459
            LP+  +QA + ++VR A QTEV EDYVELIADLID+ GEAR+ DIA+RLGV  PTV + I RL+  G +E+QPYR+IFLTE GR +AE SR+RH IVV FL AIGVS E A  DAEG+EHHVS+ETLAAFER +
Sbjct:    5 LPDADRQAANFQRVREAHQTEVAEDYVELIADLIDTAGEARAADIARRLGVAHPTVVKTIARLQRDGLVESQPYRSIFLTEAGRAMAERSRQRHAIVVGFLKAIGVSAETAERDAEGVEHHVSDETLAAFERII 138          
BLAST of mRNA_L-digitata_M_contig99612.1.1 vs. uniprot
Match: A0A512E241_9PROT (Transcriptional regulator MntR n=1 Tax=Skermanella aerolata TaxID=393310 RepID=A0A512E241_9PROT)

HSP 1 Score: 166 bits (421), Expect = 2.940e-50
Identity = 85/137 (62.04%), Postives = 107/137 (78.10%), Query Frame = 1
Query:   58 LPEPHKQADHHRQVRAARQTEVMEDYVELIADLIDSTGEARSVDIAKRLGVTTPTVARMIGRLKETGWIETQPYRAIFLTEDGRRVAEASRRRHQIVVEFLTAIGVSEEIARADAEGLEHHVSEETLAAFERCLKGR 468
            +P+  +QA + ++VR A QTE+ EDYVELIADLIDSTGEAR+ D+A+RLGV  PTV + IGRL+  G +E+ PYR+IFLTE GR +AE  +RRH+IVV FL  IGV EE A  DAEG+EHHVSE TLAAFER ++ +
Sbjct:    1 MPDADRQAANFQRVREAHQTELAEDYVELIADLIDSTGEARATDVARRLGVAHPTVVKAIGRLQRDGLVESLPYRSIFLTETGRAMAERCKRRHEIVVGFLRKIGVDEETAERDAEGIEHHVSEMTLAAFERLIRSK 137          
BLAST of mRNA_L-digitata_M_contig99612.1.1 vs. uniprot
Match: UPI001E482ECE (manganese-binding transcriptional regulator MntR n=2 Tax=Skermanella TaxID=204447 RepID=UPI001E482ECE)

HSP 1 Score: 166 bits (419), Expect = 8.630e-50
Identity = 83/139 (59.71%), Postives = 109/139 (78.42%), Query Frame = 1
Query:   46 VAPVLPEPHKQADHHRQVRAARQTEVMEDYVELIADLIDSTGEARSVDIAKRLGVTTPTVARMIGRLKETGWIETQPYRAIFLTEDGRRVAEASRRRHQIVVEFLTAIGVSEEIARADAEGLEHHVSEETLAAFERCLK 462
            V   +P+  +QA + ++VR A QTE+ EDYVELIADLID+TGEAR+ DIA+RLGV  PTV + IGRL+  G + + PYR+IFLTE GR++AE  +RRH++VV FL A+GV+EE A  DAEG+EHH+SEETL AFER ++
Sbjct:    9 VPEEMPDADRQAANFQRVREAHQTELAEDYVELIADLIDTTGEARAADIARRLGVAHPTVVKTIGRLQREGLVASLPYRSIFLTETGRKMAERCKRRHEVVVNFLKALGVTEETAERDAEGVEHHISEETLRAFERFIR 147          
BLAST of mRNA_L-digitata_M_contig99612.1.1 vs. uniprot
Match: A0A512DJM2_9PROT (Transcriptional regulator MntR n=2 Tax=Skermanella aerolata TaxID=393310 RepID=A0A512DJM2_9PROT)

HSP 1 Score: 165 bits (418), Expect = 1.010e-49
Identity = 81/136 (59.56%), Postives = 110/136 (80.88%), Query Frame = 1
Query:   55 VLPEPHKQADHHRQVRAARQTEVMEDYVELIADLIDSTGEARSVDIAKRLGVTTPTVARMIGRLKETGWIETQPYRAIFLTEDGRRVAEASRRRHQIVVEFLTAIGVSEEIARADAEGLEHHVSEETLAAFERCLK 462
             +P+  KQA + ++VR A Q EV EDYVELIADLI++TGEAR+ DIA+RLGV+ PTV + IGRL+  G +E+ PYR++FLTE GR +AE S+RRH++V+ FL A+GV++E A  DAEG+EHHVS+ETL+AFER ++
Sbjct:    8 AMPDADKQAANFQRVREAHQVEVAEDYVELIADLIEATGEARAADIARRLGVSHPTVVKAIGRLQRDGLVESLPYRSVFLTESGRAMAERSKRRHEVVLGFLKALGVADETAERDAEGIEHHVSDETLSAFERFIR 143          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99612.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8PTT8_9PROT4.000e-9389.74Transcriptional regulator MntR n=1 Tax=Rhodospiril... [more]
A0A2D8G6J4_9PROT7.110e-8786.36Transcriptional regulator MntR n=1 Tax=Alphaproteo... [more]
A0A2S6Q808_9PROT1.430e-8687.01Transcriptional regulator MntR n=4 Tax=Alphaproteo... [more]
A0A6L3B1Z6_AZOBR6.250e-5264.96Transcriptional regulator MntR n=1 Tax=Azospirillu... [more]
A0A7C1S5F2_9HYPH7.310e-5262.59Transcriptional regulator MntR n=3 Tax=root TaxID=... [more]
A0A6N7FCG9_9PROT3.470e-5163.57Transcriptional regulator MntR n=1 Tax=Alphaproteo... [more]
A0A2U1WVQ2_9PROT2.350e-5065.67Transcriptional regulator MntR n=2 Tax=Azospirillu... [more]
A0A512E241_9PROT2.940e-5062.04Transcriptional regulator MntR n=1 Tax=Skermanella... [more]
UPI001E482ECE8.630e-5059.71manganese-binding transcriptional regulator MntR n... [more]
A0A512DJM2_9PROT1.010e-4959.56Transcriptional regulator MntR n=2 Tax=Skermanella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99612contigL-digitata_M_contig99612:70..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1096546.WYO_2708
Preferred namemntR
PFAMsFe_dep_repr_C,Fe_dep_repress
Model size471
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K11924
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.57e-48
EggNOG OGsCOG1321@1|root,COG1321@2|Bacteria,1RH2Z@1224|Proteobacteria,2UA3F@28211|Alphaproteobacteria,1JUHI@119045|Methylobacteriaceae
DescriptionPFAM regulatory protein MarR
Cds size471
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408655.4630795-CDS-L-digitata_M_contig99612:69..5401682408655.4630795-CDS-L-digitata_M_contig99612:69..540Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99612 70..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99612.1.1prot_L-digitata_M_contig99612.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99612 70..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99612.1.1

>prot_L-digitata_M_contig99612.1.1 ID=prot_L-digitata_M_contig99612.1.1|Name=mRNA_L-digitata_M_contig99612.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=157bp
MSGKLKIDPSDKRPPVAPVLPEPHKQADHHRQVRAARQTEVMEDYVELIA
DLIDSTGEARSVDIAKRLGVTTPTVARMIGRLKETGWIETQPYRAIFLTE
DGRRVAEASRRRHQIVVEFLTAIGVSEEIARADAEGLEHHVSEETLAAFE
RCLKGR*
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mRNA from alignment at L-digitata_M_contig99612:70..540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99612.1.1 ID=mRNA_L-digitata_M_contig99612.1.1|Name=mRNA_L-digitata_M_contig99612.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=471bp|location=Sequence derived from alignment at L-digitata_M_contig99612:70..540+ (Laminaria digitata LdigPH10_18mv male)
ATGTCGGGAAAACTGAAAATCGATCCGTCGGATAAGCGGCCCCCGGTCGC ACCTGTCCTGCCGGAGCCTCACAAGCAGGCGGATCATCACCGCCAGGTGC GCGCCGCGCGCCAGACCGAGGTGATGGAGGACTACGTTGAACTGATCGCC GATCTGATCGATTCGACCGGGGAAGCGCGCTCCGTCGATATCGCGAAGCG GTTGGGGGTTACCACGCCGACCGTGGCCCGGATGATCGGCCGGCTCAAGG AGACGGGCTGGATCGAAACCCAGCCCTACCGGGCGATTTTCCTGACCGAG GACGGCCGCCGGGTGGCGGAAGCGTCGCGGCGGCGACATCAGATCGTCGT TGAGTTCCTCACCGCGATCGGTGTCAGCGAGGAGATCGCCCGCGCCGATG CCGAAGGGCTGGAACATCACGTCTCGGAAGAAACCCTTGCCGCGTTCGAA CGCTGTCTGAAGGGGCGCTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99612:70..540+

>mRNA_L-digitata_M_contig99612.1.1 ID=mRNA_L-digitata_M_contig99612.1.1|Name=mRNA_L-digitata_M_contig99612.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=471bp|location=Sequence derived from alignment at L-digitata_M_contig99612:70..540+ (Laminaria digitata LdigPH10_18mv male)
ATGTCGGGAAAACTGAAAATCGATCCGTCGGATAAGCGGCCCCCGGTCGC
ACCTGTCCTGCCGGAGCCTCACAAGCAGGCGGATCATCACCGCCAGGTGC
GCGCCGCGCGCCAGACCGAGGTGATGGAGGACTACGTTGAACTGATCGCC
GATCTGATCGATTCGACCGGGGAAGCGCGCTCCGTCGATATCGCGAAGCG
GTTGGGGGTTACCACGCCGACCGTGGCCCGGATGATCGGCCGGCTCAAGG
AGACGGGCTGGATCGAAACCCAGCCCTACCGGGCGATTTTCCTGACCGAG
GACGGCCGCCGGGTGGCGGAAGCGTCGCGGCGGCGACATCAGATCGTCGT
TGAGTTCCTCACCGCGATCGGTGTCAGCGAGGAGATCGCCCGCGCCGATG
CCGAAGGGCTGGAACATCACGTCTCGGAAGAAACCCTTGCCGCGTTCGAA
CGCTGTCTGAAGGGGCGCTGA
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