mRNA_L-digitata_M_contig996.9.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig996.9.1
Unique NamemRNA_L-digitata_M_contig996.9.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig996.9.1 vs. uniprot
Match: D8LFT9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT9_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 1.450e-38
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALFPLDTIKTRLQSAEGFLKAGGLRGVYNGLSAAAVGSAPGAALFFSSYEATKHALDPSSSLSQMTAASVGETVSC 261
            AGGMAGTAVDVAL+PLDTIKTRLQS EGF+K+GGLRGVYNGLSAAAVGSAPGAALFFSSYEA KHALDP S L+ M AASV ET++C
Sbjct:   13 AGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPGAALFFSSYEAAKHALDPDSPLAHMAAASVAETMAC 99
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BLAST of mRNA_L-digitata_M_contig996.9.1 vs. uniprot
Match: A0A7S2Y0N1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0N1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.880e-29
Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    4 GGMAGTAVDVALFPLDTIKTRLQSAEGFLKAGGLRGVYNGLSAAAVGSAPGAALFFSSYEA-----TKHALDPSSSLSQMTAASVGETVSC 261
            GG AGT+VDVALFPLDTIKTRLQS+EGF+KAGG RG+Y GLSAAA GSAPGAALFFSSYEA     TK   +  + L  M +ASVGETV+C
Sbjct:   16 GGCAGTSVDVALFPLDTIKTRLQSSEGFVKAGGFRGIYRGLSAAAAGSAPGAALFFSSYEASKEWGTKTFDEKYAPLVHMGSASVGETVAC 106
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BLAST of mRNA_L-digitata_M_contig996.9.1 vs. uniprot
Match: A0A835YJ97_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ97_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.660e-28
Identity = 63/87 (72.41%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:    4 GGMAGTAVDVALFPLDTIKTRLQSAEGFLKAGGLRGVYNGLSAAAVGSAPGAALFFSSYEATKHAL-DPSSSLSQMTAASVGETVSC 261
            GG+AGT+VDVALFPLDTIKTRLQS++GF+KAGG +GVYNGLSAAAVGSAPGAA FFS+YE  K  L DPS+  + M AAS  E V+C
Sbjct:   14 GGIAGTSVDVALFPLDTIKTRLQSSQGFIKAGGFKGVYNGLSAAAVGSAPGAAAFFSTYEGLKVRLGDPSAPSTHMAAASGAEIVAC 100
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BLAST of mRNA_L-digitata_M_contig996.9.1 vs. uniprot
Match: A0A397EZF3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EZF3_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.460e-28
Identity = 62/90 (68.89%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALFPLDTIKTRLQSAEGFLKAGGLRGVYNGLSAAAVGSAPGAALFFSSYEATKHALDPS------SSLSQMTAASVGET 252
            AGGMAGT VDVAL+PLDTIKTRLQS++GFLKAGG +GVY GLSAAA GSAPGAALFFSSYE TK  L         S +  M +A++GET
Sbjct:    8 AGGMAGTGVDVALYPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPGAALFFSSYETTKAFLQKQQPHLADSPVIHMASAAMGET 97
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BLAST of mRNA_L-digitata_M_contig996.9.1 vs. uniprot
Match: A0A1V9ZD58_9STRA (S-adenosylmethionine mitochondrial carrier protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZD58_9STRA)

HSP 1 Score: 111 bits (278), Expect = 3.510e-28
Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALFPLDTIKTRLQSAEGFLKAGGLRGVYNGLSAAAVGSAPGAALFFSSYEATKHALD------PSSSLSQMTAASVGETVSC 261
            AGG+AGT+VDVALFPLDTIKTRLQS++GFLKAGG +GVY GLSAAA GSAPGAALFFS+YE +K  L        +S L  M+AA+ GET +C
Sbjct:   16 AGGIAGTSVDVALFPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPGAALFFSTYETSKEVLQNKLPHLSNSPLIHMSAAACGETAAC 108
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BLAST of mRNA_L-digitata_M_contig996.9.1 vs. uniprot
Match: A0A7S2Y3T2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3T2_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.160e-28
Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    4 GGMAGTAVDVALFPLDTIKTRLQSAEGFLKAGGLRGVYNGLSAAAVGSAPGAALFFSSYEA-----TKHALDPSSSLSQMTAASVGETVSC 261
            GG AGT+VDVALFPLDTIKTRLQS+EGF+KAGG RG+Y GLSAAA GSAPGAALFFSSYEA     TK   +  + L  M +ASVGETV+C
Sbjct:   16 GGCAGTSVDVALFPLDTIKTRLQSSEGFVKAGGFRGIYRGLSAAAAGSAPGAALFFSSYEASKEWGTKTFDEKYAPLVHMGSASVGETVAC 106
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BLAST of mRNA_L-digitata_M_contig996.9.1 vs. uniprot
Match: A0A1Z5KTK6_FISSO (Solute carrier family 25 (Mitochondrial S-adenosylmethionine transporter), member 26 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KTK6_FISSO)

HSP 1 Score: 110 bits (275), Expect = 1.300e-27
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALFPLDTIKTRLQSAEGFLKAGGLRGVYNGLSAAAVGSAPGAALFFSSYEATKHAL----DPSSSLSQMTAASVGETVSC 261
            AGG+AGT+VDV LFPLDT+KTRLQ+  GF+KAGG RGVYNGL AAA+GSAPGAALFFS+YE  K  L    D   ++S MTAAS+GE  +C
Sbjct:   18 AGGLAGTSVDVTLFPLDTLKTRLQAPGGFIKAGGFRGVYNGLGAAALGSAPGAALFFSTYETMKVLLVKNGDQPDAVSHMTAASIGEAAAC 108
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BLAST of mRNA_L-digitata_M_contig996.9.1 vs. uniprot
Match: A0A1E7ET07_9STRA (Mitochondrial carrier protein PET8 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ET07_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.540e-27
Identity = 60/97 (61.86%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALFPLDTIKTRLQSAEGFLKAGGLRGVYNGLSAAAVGSAPGAALFFSSYEATK----------HALDPSSSLSQMTAASVGETVSC 261
            AGG+AGT+VDVALFP+DT+KTR+QS +GF+KAGG RG+YNGL AAA+GSAPGAALFFSSYE  K            +  + +LS M AAS+GE+V+C
Sbjct:   37 AGGLAGTSVDVALFPIDTLKTRMQSPQGFIKAGGFRGIYNGLGAAAIGSAPGAALFFSSYETFKPIIQKWQQNSDIISDNPALSHMIAASIGESVAC 133
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BLAST of mRNA_L-digitata_M_contig996.9.1 vs. uniprot
Match: F0Y7F2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7F2_AURAN)

HSP 1 Score: 109 bits (273), Expect = 1.990e-27
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALFPLDTIKTRLQSAEGFLKAGGLRGVYNGLSAAAVGSAPGAALFFSSYEATKHALDPSSSLSQMTAASVGETVSCSDQI 273
            AGG AG AVDV+LFP+DT+KTRLQ+ +GFLKAGG  G+Y GL AAA GS PGAALFFS YE T+H L   S L+Q+ AAS GE  +CS ++
Sbjct:   17 AGGAAGFAVDVSLFPIDTVKTRLQAPQGFLKAGGFTGIYRGLGAAAAGSVPGAALFFSVYETTRHVLGADSVLAQIAAASAGELCACSIRV 107
[Close]
BLAST of mRNA_L-digitata_M_contig996.9.1 vs. uniprot
Match: A0A024U5F9_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024U5F9_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.030e-27
Identity = 62/93 (66.67%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALFPLDTIKTRLQSAEGFLKAGGLRGVYNGLSAAAVGSAPGAALFFSSYEATKHALDP------SSSLSQMTAASVGETVSC 261
            AGGMAGT VDVAL+PLDTIKTRLQS++GFLKAGG +GVY GLSAAA GSAPGAALFFS+YE TK  L         S +  M +A++GET  C
Sbjct:   18 AGGMAGTGVDVALYPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPGAALFFSTYETTKRFLQQLQPHLADSPVVHMASAAMGETAGC 110
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig996.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFT9_ECTSI1.450e-3885.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2Y0N1_9STRA6.880e-2971.43Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835YJ97_9STRA1.660e-2872.41Mitochondrial carrier domain-containing protein n=... [more]
A0A397EZF3_9STRA2.460e-2868.89Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A1V9ZD58_9STRA3.510e-2867.74S-adenosylmethionine mitochondrial carrier protein... [more]
A0A7S2Y3T2_9STRA5.160e-2871.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1Z5KTK6_FISSO1.300e-2767.03Solute carrier family 25 (Mitochondrial S-adenosyl... [more]
A0A1E7ET07_9STRA1.540e-2761.86Mitochondrial carrier protein PET8 n=1 Tax=Fragila... [more]
F0Y7F2_AURAN1.990e-2763.74Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A024U5F9_9STRA2.030e-2766.67Uncharacterized protein n=9 Tax=Aphanomyces TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig996contigL-digitata_M_contig996:21483..22462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFT9
Preferred nameSLC25A26
PFAMsMito_carr
Model size276
Max annot lvl2759|Eukaryota
KEGG koko:K15111
KEGG TC2.A.29.18
Hectar predicted targeting categoryother localisation
GOsGO:0000095,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006839,GO:0006855,GO:0008150,GO:0015238,GO:0015805,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051179,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0055085,GO:0071702,GO:0072348,GO:1901682,GO:1901962
Exons2
Evalue1.89e-37
EggNOG OGsKOG0768@1|root,KOG0768@2759|Eukaryota
DescriptionS-adenosyl-L-methionine transmembrane transport
Cds size267
COG categoryU
BRITEko00000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408655.1633832-UTR-L-digitata_M_contig996:21482..214911682408655.1633832-UTR-L-digitata_M_contig996:21482..21491Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig996 21483..21491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408655.1876223-CDS-L-digitata_M_contig996:21491..216391682408655.1876223-CDS-L-digitata_M_contig996:21491..21639Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig996 21492..21639 +
1682408655.2033722-CDS-L-digitata_M_contig996:22343..224621682408655.2033722-CDS-L-digitata_M_contig996:22343..22462Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig996 22344..22462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig996.9.1prot_L-digitata_M_contig996.9.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig996 21492..22462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig996.9.1

>prot_L-digitata_M_contig996.9.1 ID=prot_L-digitata_M_contig996.9.1|Name=mRNA_L-digitata_M_contig996.9.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=89bp
MAGTAVDVALFPLDTIKTRLQSAEGFLKAGGLRGVYNGLSAAAVGSAPGA
ALFFSSYEATKHALDPSSSLSQMTAASVGETVSCSDQI*
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mRNA from alignment at L-digitata_M_contig996:21483..22462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig996.9.1 ID=mRNA_L-digitata_M_contig996.9.1|Name=mRNA_L-digitata_M_contig996.9.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=980bp|location=Sequence derived from alignment at L-digitata_M_contig996:21483..22462+ (Laminaria digitata LdigPH10_18mv male)
GCGGGCGGCATGGCAGGTACGGCGGTAGACGTGGCACTATTTCCTTTGGA
TACTATCAAGACTAGGCTTCAGTCTGCGGAAGGGTTTCTAAAAGCCGGAG
GCCTGCGGGGGGTGTACAACGGCTTGAGCGCGGCTGCGGTGGGCTCTGCA
CCCGGAGGTTAGTTTGTGCGTTCTTCAACCCGGGGATCGTGCGTTCTGCA
CCCCGGGGTTTGTGGGTTCTGCACCCCGGGGTTAGTGCGTCCTGCCCCCC
GGGGTTTGTGGGTTCTACACCCCGGGGTTTGTGCGTTTTTGCACCCCGGG
AATTGTGCGTTCTTGCACCACGGGGGTTGTGGTTTCTGCACCCCGGGGCT
GGGGTATTGCGCACCCTGAGAATCGTGTGTTCGGCGCCATGAAAATCGTT
TGTTCTGACCCTGAGAAGTTTACGTTCAATTATGGGTCATCGCTATTCGC
CATCGCTATCAACATGTTGTGGTCGTTGTCAATGTCGTCGTTGTAAGGCC
ATCGCTATCGACACGTCGTCGTTAAGTGATCTTCATCGTATTGGTCATTG
CTATCGCCATATCGCTGTCGCCATCGTTACCGTTACCGATATCACGGTCG
CCTGCGCGACTGCTTGCACCCCCCCGCCCCCCCCTATCAACACAGCGGCT
CCTTAGACAACAACCAGACCAAAAACCGAAACAGACACACACAACCCCAT
AAGTACACCCAGCGTGGGCTCCTTCCGCCACACAAACCTCGTGCGGTGGT
TCTGTTTCCCTTTGACAGATTACGAAGTACCAAGTATCATTGTGCTTACG
GGACTCGGGCGCAGCTGACTCGCCGCCCACCCTTCTCCTTCCCCGCCCCC
TCTCCTCCCAGCGGCCCTGTTTTTCAGCTCGTACGAAGCCACGAAACATG
CGCTAGACCCGTCGTCTTCTCTGTCGCAGATGACCGCGGCTTCTGTCGGT
GAAACGGTAAGTTGCTCGGACCAGATTTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig996:21483..22462+

>mRNA_L-digitata_M_contig996.9.1 ID=mRNA_L-digitata_M_contig996.9.1|Name=mRNA_L-digitata_M_contig996.9.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=267bp|location=Sequence derived from alignment at L-digitata_M_contig996:21483..22462+ (Laminaria digitata LdigPH10_18mv male)
ATGGCAGGTACGGCGGTAGACGTGGCACTATTTCCTTTGGATACTATCAA
GACTAGGCTTCAGTCTGCGGAAGGGTTTCTAAAAGCCGGAGGCCTGCGGG
GGGTGTACAACGGCTTGAGCGCGGCTGCGGTGGGCTCTGCACCCGGAGCG
GCCCTGTTTTTCAGCTCGTACGAAGCCACGAAACATGCGCTAGACCCGTC
GTCTTCTCTGTCGCAGATGACCGCGGCTTCTGTCGGTGAAACGGTAAGTT
GCTCGGACCAGATTTAA
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