mRNA_L-digitata_M_contig996.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig996.3.1
Unique NamemRNA_L-digitata_M_contig996.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig996.3.1 vs. uniprot
Match: D8LFT7_ECTSI (Plastid phosphoglycerate mutase protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT7_ECTSI)

HSP 1 Score: 469 bits (1208), Expect = 1.190e-164
Identity = 249/329 (75.68%), Postives = 275/329 (83.59%), Query Frame = 1
Query:    1 MRRPGSRPRFVPGGLVLALATARKSVTRAFNFAGCSSVHGRRGHAGSGKRLW--AAAQSSS----------TATPPESPLPPK--DGDLVSFFLLRHGQTNFNAIGRIQGTLDSSILTEQGILQALEAGKTLASTVDLDLGPTVIVSPMGRAQQTLACVREELCKGE--RDFETVEIVPNIREIELFEWQGELKEDIIKNSPEEYSAWVADPSNFNFSGRYPARDLWERAEKAWEEMRSLESIQGQHRTLVVAHNAINQALLWTALGCDTSYFRKLSWPNCAVLELQWRRGAARAERYRWVIPEPSPFVEASDAARLLKTSVDDTQYTL 939
            MRRPG RPR  PGG ++ALATARKS TRAF F G SS       +  GKRL+   AA+SS+          TATPPESP PP   DG+L SFFLLRHGQTNFNAIGRIQGTLDSSILTE+GI QALEAGKTLAS  DLDLGPTV+VSPMGRAQQTL CVR+EL K E  +DFETVEIVP+IREIELFEWQG+LKEDIIKN+PE+Y++WVADPSNFNFSGRYPARDLW+RA  AW+++RSL+SIQ Q RTLVVAHNAINQALLWTALGCDT+YFRKLSWPNCAVLELQWRRG ARAERYRWV+PE S FVEA+DAARLLK   DD +YTL
Sbjct:    1 MRRPG-RPRPAPGGFLIALATARKSFTRAFCFGGGSS-------SSVGKRLFRSTAAESSAKAGTGPRGLATATPPESPFPPAGDDGELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLKDGEDDNRYTL 321          
BLAST of mRNA_L-digitata_M_contig996.3.1 vs. uniprot
Match: Q00GN2_KARBR (Plastid phosphoglycerate mutase protein (Fragment) n=1 Tax=Karenia brevis TaxID=156230 RepID=Q00GN2_KARBR)

HSP 1 Score: 170 bits (431), Expect = 4.730e-47
Identity = 99/230 (43.04%), Postives = 138/230 (60.00%), Query Frame = 1
Query:  232 FFLLRHGQTNFNAIGRIQGTLDSSILTEQGILQALEAGKTLASTVDLDLGPTVIVSPMGRAQQTLACVREELCKGERDFETVEIVPNIREIELFEWQGELKEDIIKNSPEEYSAWVADPSNFNFSGRYPARDLWERAEKAWEEMRSLES----IQGQHRTLVVAHNAINQALLWTALGCDTSYFRKLSWPNCAVLELQWRRGAARAERYRWVIP--EPSPFVEASDAARL 903
            + +LRHG+TNFNA G +QG+ D S LTE+G  QA +AG  LA+  DL +   V VSP+ RA  TL  V + L     +  T+   P +REI+L+ W+G+ KED+ +  P+ Y AW +   +F   G YP  +LW+RA++AW  +R+ E     I G   TL+V HN I QAL ++A+G D SYFR+LS+PN   LE  W  G   A R+RW +P  E S    ++ AA L
Sbjct:   99 YLILRHGETNFNAKGILQGSSDISRLTEKGQAQANKAGMELATLSDLPI-EQVFVSPLTRATSTLELVAQSLPCSLPEAITL---PELREIDLYSWEGKQKEDLKREMPDTYQAWKSADPDFVVDGHYPLVELWQRAKEAWAAIRASEDGKRDIDGV--TLIVCHNGIGQALFFSAIGLDASYFRQLSFPNAGALECDWPLGELHASRWRWRLPLDEASSEWRSATAASL 322          
BLAST of mRNA_L-digitata_M_contig996.3.1 vs. uniprot
Match: A0A7S0F1H7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F1H7_9CRYP)

HSP 1 Score: 167 bits (422), Expect = 3.750e-45
Identity = 94/217 (43.32%), Postives = 138/217 (63.59%), Query Frame = 1
Query:  232 FFLLRHGQTNFNAIGRIQGTLDSSILTEQGILQALEAGKTLASTVDLDLGPTVIVSPMGRAQQTLACVREELCKGERDFETVEIVPNIREIELFEWQGELKEDIIKNSPEEYSAWVAD-PSNFNF-SGRYPARDLWERAEKAWEEMRSLESIQGQHRTLVVAHNAINQALLWTALGCDTSYFRKLSWPNCAVLELQWRRGAARAERYRWVIPEPSPF 876
            F +LRHG+TN+NA GRIQG+ D S LTE+G  QA   G  L S + +D   +V VSP+ RA++TL      L  G     +  ++ ++RE++L+EW+G LK++I +  P+ YS W  + P  F   SG+YP RDLW+RA   W+ +R  ++  G+  TL+VAHN INQALL T LG    +FRKL +PNC + E+    G ++A+++RW+ P PS +
Sbjct:  158 FLILRHGKTNYNAEGRIQGSTDFSRLTEEGEAQASSVGGIL-SEIHID---SVFVSPLTRARRTLELAEAGL--GRNLSGSAIVLDDLREVDLYEWEGMLKKEIKEMYPDIYSLWRGENPRQFKLDSGKYPIRDLWKRASNVWDVLRR-DATNGK-TTLIVAHNGINQALLCTTLGLSEEFFRKLEFPNCGIAEVIIPHGQSKAKQWRWLYPTPSEW 366          
BLAST of mRNA_L-digitata_M_contig996.3.1 vs. uniprot
Match: A0A7S4C0X0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0X0_CHRCT)

HSP 1 Score: 160 bits (406), Expect = 6.750e-44
Identity = 102/252 (40.48%), Postives = 134/252 (53.17%), Query Frame = 1
Query:  169 SSSTATPPESPLPPKDGDLVSFFLLRHGQTNFNAIGRIQGTLDSSILTEQGILQALEAGKTLASTVDLDLGPTVIVSPMGRAQQTLACVREELCKGERDFETVEIV-PNIREIELFEWQGELKEDIIKNSPEEYSAWVADPSNFNFSGRYPARDLWERAEKAWEEMRSLESIQGQHRT-LVVAHNAINQALLWTALGCDTSYFRKLSWPNCAVLELQWRRGAAR--------------AERYRWVIPEPSPF 876
            SS+   PP S  P   G    F +LRHG+TN NA G IQG+ D S+LT++G  QA  AG+ LA          V VSP+ RA+ TL     ELC+      T EIV  ++RE++L++W+G  K D+ +  P+EY AW   P  F+ SG+ P  DLW RA   W E+ S         T LVV H+ I QALL TALG D   FR+ + PNC  +EL+W  G                 A R+RW+IP  S +
Sbjct:   17 SSAALQPPTSAAP---GAGCKFVILRHGETNHNADGIIQGSSDVSVLTDKGKEQARRAGEQLAELYQEGSISKVFVSPLSRARDTL-----ELCRKTAPLPTGEIVLADLREVDLWDWEGRNKADLRRERPDEYEAWKGQPLLFSVSGKKPIVDLWARARNVWREIHSQVPEDPSSGTILVVCHSGIGQALLSTALGEDERSFRRRALPNCGAVELEWIDGYVASTDGGVASMDSDCLANRWRWLIPNTSEW 260          
BLAST of mRNA_L-digitata_M_contig996.3.1 vs. uniprot
Match: A0A7S4I552_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I552_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.080e-40
Identity = 91/248 (36.69%), Postives = 134/248 (54.03%), Query Frame = 1
Query:  202 LPPKDGDLVSFFLLRHGQTNFNAIGRIQGTLDSSILTEQGILQALEAGKTLASTVD----LDLGPT--VIVSPMGRAQQTLACVREE----LCKGERDFETVEIVPNIREIELFEWQGELKEDIIKNSPEEYSAW-VADPSNFNFSGRYPARDLWERAEKAWEEMRSLESIQGQ-------HRTLVVAHNAINQALLWTALGCDTSYFRKLSWPNCAVLELQWRRGAARAERYRWVIPEPSPFVEASD 891
            +PP    L  +F+LRHG+T+ NA GRIQG+ D S LTE+G  QA   G  +    D    +D GP   V  SP+ RAQ+TL  +RE     L  GE +     ++  +REI+L++W+G    +I +N PE Y+AW + D      SG  P  ++W RA + WE +RS  ++ G+         TL+V H  + Q LL +ALG D ++FR+  +PNC + E+ W      A  +RW  P  S  ++  D
Sbjct:   32 VPPSSASLHRYFILRHGETDANASGRIQGSADFSRLTERGQSQAARVGSVVFGGSDGEGSID-GPIRHVYASPLTRAQETLQIIREHADPSLIPGEGEI----VLDELREIDLYDWEGRHTSEIEENDPEAYAAWTMGDAHGMEVSGCKPIVEMWARAGRVWEIIRSANAVAGRTDSDENPSSTLLVCHGTLGQGLLSSALGLDETHFRRHDFPNCGMAEIVWYHDEEIARNWRWHHPSRSELMQPFD 274          
BLAST of mRNA_L-digitata_M_contig996.3.1 vs. uniprot
Match: L1ISC6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ISC6_GUITC)

HSP 1 Score: 149 bits (376), Expect = 2.490e-40
Identity = 89/196 (45.41%), Postives = 122/196 (62.24%), Query Frame = 1
Query:  232 FFLLRHGQTNFNAIGRIQGTLDSSILTEQGILQALEAGKTLASTVDLDLGPTVIVSPMGRAQQTLACVREELCKGERDFETVEIVPNIREIELFEWQGELKEDIIKNS-PEEYSAWVAD-PSNFNF-SGRYPARDLWERAEKAWEEMRSLESIQGQHRTLVVAHNAINQALLWTALGCDTSYFRKLSWPNCAVLEL 810
            F  LRHG+TN+NA GRIQG+ D S LTE+G  QA   G+ L S + +D   +V VSP+ RA+ TL         G    ++  ++ ++RE++L EW+G LK+  IK   P+ YS W  + P  F   SG+YP RDLW+RA K WE +R  ++  G+  +L+VAHN INQALL T LG    YFRKL +PNC + E+
Sbjct:   17 FLFLRHGKTNYNAEGRIQGSTDFSRLTEEGEAQASSVGRIL-SDIPID---SVFVSPLTRARMTLELAAAG--SGRNLSDSAMVLDDLREVDLHEWEGMLKKQEIKEMYPDIYSLWRGENPREFKLDSGKYPIRDLWKRAGKVWEVLRR-DAANGK-TSLIVAHNGINQALLCTTLGLSEEYFRKLEFPNCGIAEV 204          
BLAST of mRNA_L-digitata_M_contig996.3.1 vs. uniprot
Match: A0A812MB86_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812MB86_9DINO)

HSP 1 Score: 140 bits (352), Expect = 2.780e-36
Identity = 91/229 (39.74%), Postives = 127/229 (55.46%), Query Frame = 1
Query:  232 FFLLRHGQTNFNAIGRIQGTLDS-SILTEQGILQALEAGKTLASTVDLDLGPTVIVSPMGRAQQTLACVREELCKGERDFETVEIVPNIREIELFEWQGELKEDIIKNSPEEYSAWVADPSNFNFSGRYPARDLWERAEKAWEEMRSLESIQGQHRTLVVAHNAINQALLWTALGCDTSYFRKLSWPNCAVLELQWRRGAARAERYRWVIPEPSPFVEASDAARLLKTS 915
            F L+RHGQT FNA  R QG++D  S+LT +GI QA E G+ L           V VSP+ RA+QTL   R     GE    T   +  +REI+L+EWQG  +++I    PE    W  +  N   SGRY  RDLW R+ +AW  MR + +  G+ R+LVVAH AI +AL+ TALG     FR L+  N  V+E+ W    A+   +R + P+  P+   +D  + +K +
Sbjct:   22 FLLVRHGQTTFNAEKRFQGSMDEGSVLTAKGISQAEELGQWLKGNPVA----AVFVSPLLRARQTLEVART--VAGEVLPPTETKLSELREIDLYEWQGRTQDEIRAEDPELMRLWKEETWNLQVSGRYVVRDLWRRSIEAWHRMRQV-APSGEERSLVVAHGAIIKALISTALGLPEQGFRHLAMSNGEVVEVAWSGSEAK---WRKLHPDKGPWRCLADEEQAMKAN 240          
BLAST of mRNA_L-digitata_M_contig996.3.1 vs. uniprot
Match: R1DPI0_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DPI0_EMIHU)

HSP 1 Score: 139 bits (351), Expect = 6.690e-36
Identity = 94/257 (36.58%), Postives = 132/257 (51.36%), Query Frame = 1
Query:  208 PKDGDLVSFFLLRHGQTNFNAIGRIQGTLDSSILTEQGILQALEAGKTLASTVDLDLGPTVIVSPMGRAQQTLACVREELCKGERDFETVEIVPNIREIELFEWQGELKEDIIKNSPEEYSAWVADPSNFNFSGRYPAR-----DLWERAEKA-WEEMRSLESIQGQH---RTLVVAHNAINQALLWTALGCDTSYFRKLS------------WPNCAVLELQWRRGAARAERYRWVIPEPSPFVEASDAARLLKTS 915
            P     V F +LRHGQT+ N  G IQG+ D S L+++G  QA E G  LA   D+ +  T + SP+ RAQQT     E L     D  T   +  +REI+L  W+G  K ++    P+ Y+AW  DP      GR P       +LWERA  A W  +R++++   +     TLVV H ++ QALL TALG D + +R+              +PNC + E+ W   A RA R+RW +PE   + ++  AAR L  S
Sbjct:   14 PPCASAVRFLVLRHGQTDHNRDGIIQGSSDVSRLSDRGRTQAREVGAALARLGDVRVARTFL-SPLARAQQT----HEILLLDRPDLPTPTTLDGLREIDLGSWEGRAKAELRAEQPDVYAAWQCDPLAMVVDGRRPRCRKPIVELWERARSAAWPTLRAVDTAAAEDDEGATLVVCHGSLGQALLCTALGLDATAWRRHRLARCTAERARHPFPNCGMAEIDWPADAPRATRWRWRLPEEGCW-QSGTAARALHLS 264          
BLAST of mRNA_L-digitata_M_contig996.3.1 vs. uniprot
Match: A0A812LVJ0_9DINO (NEK1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812LVJ0_9DINO)

HSP 1 Score: 137 bits (344), Expect = 3.830e-33
Identity = 90/229 (39.30%), Postives = 126/229 (55.02%), Query Frame = 1
Query:  232 FFLLRHGQTNFNAIGRIQGTLDS-SILTEQGILQALEAGKTLASTVDLDLGPTVIVSPMGRAQQTLACVREELCKGERDFETVEIVPNIREIELFEWQGELKEDIIKNSPEEYSAWVADPSNFNFSGRYPARDLWERAEKAWEEMRSLESIQGQHRTLVVAHNAINQALLWTALGCDTSYFRKLSWPNCAVLELQWRRGAARAERYRWVIPEPSPFVEASDAARLLKTS 915
            F L+RHGQT FNA  R QG++D  S+LT +GI QA E G+ L           V VSP+ RA+QTL   R     GE    T   +  +REI+L+EWQG  +++I    PE    W  +  N   SGRY  RDLW R+ +AW  MR +   +G+  +LVVAH AI +AL+ TALG     FR L+  N  V+E+ W    A+   +R + P+  P+   +D  + +K +
Sbjct:  255 FLLVRHGQTTFNAEKRFQGSMDEGSVLTAKGISQAEELGQWLKGNPVA----AVFVSPLLRARQTLEVART--VAGEVLPPTETKLSELREIDLYEWQGRTQDEIRAEDPEFIRLWKEETWNLQVSGRYVVRDLWRRSIEAWHRMRQVAPSRGE-TSLVVAHGAIIKALISTALGLPEQGFRHLAMSNGEVVEVAWSGSEAK---WRKLHPDKGPWRCLADEEQAMKAN 473          
BLAST of mRNA_L-digitata_M_contig996.3.1 vs. uniprot
Match: A0A8J2X569_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X569_9STRA)

HSP 1 Score: 130 bits (328), Expect = 8.600e-33
Identity = 90/224 (40.18%), Postives = 126/224 (56.25%), Query Frame = 1
Query:  232 FFLLRHGQTNFNAIGRIQGTLDSSILTEQGILQALEAGKTLASTVDLDLGPTVIVSPMGRAQQTLACVREELCKGERDFETVEIVPNIREIELFEWQGELKEDIIKNSPEEYSAWVADPSNFNFS-GRYPARDLWERAEKAWEEMRSLESIQGQHRTLVVAHNAINQALLWTALGCDTSYFR--KLSWPNCAVLELQWRRGAARAERYRWVIPEPSPFVEASDA 894
            F + RHG+TNFNA GRIQGTLD+S+LT +G+ QA E G  +A   +L     V VSPM RA+QTLAC+ EE C G    E V +  ++REIEL  W+G+LK +++      ++ W ADP+ F    G  P  DLW RA   W  +R          +LVV+H A+ + ++  ALG     FR  K  + NC ++E+ W  GA  A  +R +    + +  A DA
Sbjct:   23 FLIARHGETNFNAEGRIQGTLDTSVLTARGVRQAEELGCYIADE-ELARISKVWVSPMTRARQTLACI-EEAC-GTLLPEPV-VRDDLREIELHTWEGKLKSEVMDTG---WARWKADPAAFVMDDGARPLPDLWARAVGNWAALRR----DAPPCSLVVSHGALGRCMVAAALGGAMDTFRDPKFQFDNCELVEVAWAPGAPAAACWRRLHRARTAWEAAEDA 235          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig996.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFT7_ECTSI1.190e-16475.68Plastid phosphoglycerate mutase protein n=2 Tax=Ec... [more]
Q00GN2_KARBR4.730e-4743.04Plastid phosphoglycerate mutase protein (Fragment)... [more]
A0A7S0F1H7_9CRYP3.750e-4543.32Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S4C0X0_CHRCT6.750e-4440.48Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4I552_9STRA1.080e-4036.69Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
L1ISC6_GUITC2.490e-4045.41Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A812MB86_9DINO2.780e-3639.74Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
R1DPI0_EMIHU6.690e-3636.58Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A812LVJ0_9DINO3.830e-3339.30NEK1 protein n=1 Tax=Symbiodinium necroappetens Ta... [more]
A0A8J2X569_9STRA8.600e-3340.18Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig996contigL-digitata_M_contig996:6427..11795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFT7
PFAMsHis_Phos_1
Model size942
Max annot lvl2759|Eukaryota
KEGG koko:K22200
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0047538
Exons4
Evalue1.95e-165
EggNOG OGsCOG0588@1|root,KOG0235@2759|Eukaryota
Ec32 ortholog descriptionplastid phosphoglycerate mutase protein precursor
Ec32 orthologEc-01_000980.1
EC3.1.3.63
Descriptionregulation of pentose-phosphate shunt
Cds size942
COG categoryG
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408654.9192863-CDS-L-digitata_M_contig996:6426..67571682408654.9192863-CDS-L-digitata_M_contig996:6426..6757Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig996 6427..6757 -
1682408654.9514284-CDS-L-digitata_M_contig996:8928..90211682408654.9514284-CDS-L-digitata_M_contig996:8928..9021Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig996 8929..9021 -
1682408654.969949-CDS-L-digitata_M_contig996:10356..105891682408654.969949-CDS-L-digitata_M_contig996:10356..10589Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig996 10357..10589 -
1682408654.9809647-CDS-L-digitata_M_contig996:11510..117951682408654.9809647-CDS-L-digitata_M_contig996:11510..11795Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig996 11511..11795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig996.3.1prot_L-digitata_M_contig996.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig996 6427..11795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig996.3.1

>prot_L-digitata_M_contig996.3.1 ID=prot_L-digitata_M_contig996.3.1|Name=mRNA_L-digitata_M_contig996.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=314bp
MRRPGSRPRFVPGGLVLALATARKSVTRAFNFAGCSSVHGRRGHAGSGKR
LWAAAQSSSTATPPESPLPPKDGDLVSFFLLRHGQTNFNAIGRIQGTLDS
SILTEQGILQALEAGKTLASTVDLDLGPTVIVSPMGRAQQTLACVREELC
KGERDFETVEIVPNIREIELFEWQGELKEDIIKNSPEEYSAWVADPSNFN
FSGRYPARDLWERAEKAWEEMRSLESIQGQHRTLVVAHNAINQALLWTAL
GCDTSYFRKLSWPNCAVLELQWRRGAARAERYRWVIPEPSPFVEASDAAR
LLKTSVDDTQYTL*
back to top

mRNA from alignment at L-digitata_M_contig996:6427..11795-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig996.3.1 ID=mRNA_L-digitata_M_contig996.3.1|Name=mRNA_L-digitata_M_contig996.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=5369bp|location=Sequence derived from alignment at L-digitata_M_contig996:6427..11795- (Laminaria digitata LdigPH10_18mv male)
ATGAGGAGACCGGGTAGCCGCCCGCGGTTCGTACCAGGAGGGCTTGTGCT AGCTCTGGCCACGGCGAGGAAGAGCGTAACGCGGGCTTTCAACTTCGCCG GGTGCAGCAGTGTCCACGGACGGCGGGGGCATGCCGGCAGCGGGAAGCGG TTGTGGGCGGCGGCGCAATCATCGTCTACTGCAACCCCACCTGAATCACC CTTGCCTCCCAAAGATGGTGATCTTGTCTCGTTCTTTTTGCTTCGGCACG GTCAAACCAACTTCAACGCCATAGGGCGTATCCAGGTGAGCTCGACCGCC GTGCCGTGACGTGAGGAGGTGCTTGTGTGCTGGTAGATGGTAAGGAGGAC GTTCGGTTCCTGTCCGAGGAGAGGGAGTCTCGAGGAGGGTTGCCTAGAGG AAATTGTTGCGCATATTATGCCTCCTTGTATGTGGTATGAAAATCGTGGC TCCAAGTTGCAGCAGCACACACATACACATGCAACGCGGAGGAGCTGAAC TGCTGCTGCTGCTGTGTCTGCTCTGTTTGGCTCGCATGTGAGAGCAACTG CAACTGCTGCTACAGCCGCGCGCTCTCCGTACGCTGGCCGTCAAATTCGC CACCATCCTCTACCAGTATGTGCCAAGCTTCTCCTGTGATGAACGACTTC GTATGACCACGTATATACGTATACTCGTACTCTAACTCGACGTTAATACC TGGTACCTATGTCATGTACCTCGGGTACACGCCATACGTCGTACTCTAAC TCGACGTTAATACCTGGTACCTATGTCATGTACCTCGGGTACACGTCGTA CGTCTGTGGTCTACCGGTCAGCAGTGCTTGTACAAGGTGATCCGCTCGAC GTCGATCTGCAGAGTAGCAGTACGGTAAAGCTGGTCGAGGCTCGCTTTCT TATTTGGGAATGGGTGCGTTCTACACTAAATTTAAGTAAAAACGACTCCC GAGTTTCCTATTTTCCTGGGTTTCTTAGTGCCCATGTTCTTATTAACAGG AGATGTCCCGTACTGTAGTACTCATGTACCGGTACGAAATGATTTCCGAA AGAAGAAATAAGAAATAGGCAGTAGTGATGGTCGTGACAAGGGGCAGGAA GGATGATTATTTATAGGACAACAGCAGTGATAAGGATGAGCATGTACGTA CGCTTGAGGCGGTGACTCCTTCTCTGGCGCATACGCCTGTCCTTGCTCCG CAACAGGGGACGTTAGACTCGTCGATCCTAACCGAACAGGGTATCTTACA AGCCTTGGAGGCCGGGAAGACGCTTGCATCGACGGTTGACCTCGACCTGG GGCCCACGGTGATAGTGTCGCCTATGGGCAGGGCGCAGCAGACGCTCGCC TGCGTGCGGGAGGAACTCTGTAAGGGGGAGAGGGACTTCGAGACGGTCGA GATCGTTCCCAACATCAGGGAGATCGAGCTGTTCGAGTGGTGAGTTTCGT CCCTCAAGAGTGTCGTATCATACTTCCGAAGGCGTTGGTAACGCGGGGGC TCGACTATCGACTAGCATCACACTTGTTGTTATTCTCGTCGCCACAATGC AGTCCGTTCTCACAGGACAGAATCCAATAACTCTGTAGTGGAAGATTACA ACGAGCGGTACAGCGGTACCGGTAGCCAGGTACTTGCTGTAATTGCGTAA ATTGCTGCTGTTTTACCGACCGCGGCAAAACTCTTGCAGCTCTTCATAAG GTTGTTGTTCTTCCCATGTTTAGACTGCGGGTTATACGAAGTTATACGAA GTGTAGTCTATGCTTACTGTTGCCGTACCACCCTGCCGTGTTGAGGTGCA TTCTAAAACAGGGCCACCGCAAGACGAGAAGTACGTTGGAAGAAATCCGT TTCAGATTGAGCGATAGAGTGAATTTCAACTTCCGGTCCGCTCCGCTCAA GCACACACAGCGCGGAGATCAAGAGATGGGAGATCAAGAAGTATTGCACC TTCATCTCGTCTTTACGCTTTACATTCTGAGTTACGACTATGGAGGGAGA GAAACAGAAGTGCAAAGATAATAAAAGGGATGAAAAAACAAAAAACAAAA AAAACTTTACGCCCACCCGATATACAAACTGTACCAAGTAGACACTGTAC GTAAAGTACCTGGTATAAGTCTATATCAGATAGAGCGTTGCTAATAGCTC GTTAGTTGGTTTAATCGCGCGGTATCATATACCTGGTATGTTGCATCACT ACTGCTGCCGCCGTACCAGGTACCTGGCATGTTGCATCAGCAATAGTCTT CTATTTATAGCGGTAGATTCAAAGCGTTTCGGAAGCGATATGATTCGCTT GATCAAATCACGAAAATGGGCGACGGCAGGGGGCAGGTAAAGCGCCCAAG CCCCGTGATTCGCCAGAAGAAGAGAACGATTCACACTACCGGTAATTGGT AGTAATAATGCGTTGCCTTCAACCGCTTCGGTTTTCGGTTCGATTTTCGG TTCGGTTTTCGGTTCAGTTTTCGGTTCGGTTTTCGGTTCGACTCAGCGAG GCGGGACCGAAGGATCTCCTACAGATAATTCGGCGGGACACCCTTGAGAA CGTCGTGGCCGTAGGGCTTACGCCGTCCCCGGTCGTGACATGAGGATGAT GGCGTGTACTGCCTGTATAGATTGGCTATGTGGCTGTAGTTTGCATACTA CCCATACCTTGCGGCTGTAAGGCTTGCGGTTTGAATATGAATTTGAATGT CCACCGCTTTGGCCCCATGATGATCGTGAACACGTGAAACACTGATGATC GTGAACACGTGAACGCTTGCACAGGCAAGGAGAGCTGAAGGAAGACATCA TAAAGAACAGTCCTGAGGAGTACTCGGCGTGGGTGGCGGATCCGTCCAAT TTCAACTTTTCGGGGAGGTGAGCACGTCTGAACACCTTGTAAAAAATGTG ATGTCCTGCCAACCAACCAACAACCAACGAACTGTCTGACCCGTGCTATG ATGTAGAGGTTTGATGTGAAGAACACACGCACGAACAGACACGCACGTTT GTGTGTTCTTCGGTGTATTCTTCCGTGGAGAAACACGACACCAACCAAGT ACCCTGGGAGCGCCGGGGGGCGCTGGAGACTGGAGGCTGTTCAGTAAAGA GCCTGTACAAGCGACCGGTCTTTTTGGGCGCGTCAAGGCCTCTTTTGGCC ATAATATACTAATTTTAGTGTCTGGCGCCGTCAGTCAAGGGGTCAAATCG CGGTCTCCTATTCGTGCTATATTAGGTTCGTCACGTAGAAGCGGGTTCGT TTTGGACGCGTACTCTATTGTAGATGGCACGCTGAACTACACCTTCTTCG CGTTTCAGCATATTTCATGAGTTAATTTCGTTGTGGGGTGGATGCAACAC AGGACGCCTACGATCAGTACTCTGTACAAGTATTGATGCATGCTACTTCG TACACTCTGTCCGTAAATATAAGCACCATGTTATATGAAAATTAGTATGG AAACGGTGCTTATATTTCGGTATACCATAGGAGTGTGCCTATCTTTTTCT GAGGCTTCTTACTTGAGGAGCTCTTTTCCCCACTCTCGAGAATCATTAAA TTGCAACGCGATGAACAATCCCATGGCCGAGGTTTATGTTCCACACACAT ATTCATAATAACTCGAAAAAAGAGATACCTGGTAAGTTTGACCCTACAAT TGTTCGCTGGGGGGCATCTATAAAAGTATGTCCTAAAATTTAATTATTTC ATACTAATTCAAGACATCAATTAGTTTTCACCTGTGAGGCACACGATATA AACAGATACCAGGTACCAGGTAGTGTATAACACTATTAATATCGATATTC CAGCGATACTGACGGCCGTTATTGTCGAAGGACATTTAGTCGTAATTTTC CATATTTTCCAAATATTTTTTTCGCGCAAGTTTTTTATTTTCCATATTTT CCAAATAGTTTTTCCCAATATTGGAACGGGAAGCGACCCGGATATTTTGC CCTCTGTTAAATTTCCAACTTTGGAAATGTGTCTTACCAGGTACTGGTAT GTTTTTCTTGATTTTCCTGATTTTCTTGGAAAAAAAACTTGGAAAATCTG GAAAAAAGTTGCTCGATACTGTAATAACGGCCCTGAGTAGTTCCTCATTG AGGAACCCCGTCAGTCAGAAATATTCTTATCGAAAAAGTGCTATGCTATA AGGCATGCCCTCTCGTACCACGGCTCTATTTTTGTTTGAAAGAGGAATGC TGGCCTATTTAGGCTGGATCTCTTACTTGAGAACGGAGTGCACTCTACGA AGTATATATACACTCTACGAGTACACTACTACTGTAGTTTCGGCACAACG GCTCCCAATTTTCTTATTTCCATGTGAAACTCAGCCTGTCTTTTCTTATT GCTCGTTTTGTTAGTGTATTGATGTCCTGTACTCTTAACGGCTTCCGAGT TTCTTGTTTCCATGTGAATCTCATCCTTTTTTTTTCCTTTTTTTTTATTG CTCGTTTTGTGTTTTGTTAGTATATTGATGTCTACGAGCACTGTAGGCTC TGAGCGTTTTTATGGCCGACGACCTTCGCGGTTTATATATATGTATATAC GCAAGAAATTGTTCTGAGGGCAGGAACTGAAATTGCGCACGCCCGGTATT CCCGGCGTTGCCGCCCCGCTCCTTTCTTTCTGCACAGCCAAGCACCGGTG TTTTACCTGTTTAACCCGTTTCGTACTGTACACCTATATAAACGCCATAC CCGGTACTGATCGTAAATTAAGAGACATTTAGATGACCACAAAATGTACA AATGCACCTTAGACTGACATGGCGTTTCGAGCATGACTGGCCACGGCCAC AAATATTTTTCTTAACTTCAACTTCAAACAAAACATTAGGTTTGAGTTCC GACAAGATTGTTCGATGCTCTCATCTCTGCAAGCTGCGTGATGCCACACA TACGCCGGTCGCTACATGTTTTTTACAGAAATGTATTGTCTCGTCTTGAA TGTCTTGAAGTTGATGTCCTGAATGTTAATGTTGGCCCCTCTTTACCCGC TTCCCCCCCCCCCGCCCCCGCCCCTTGTGACATCGAAGGTACCCCGCGAG GGACCTGTGGGAGCGAGCGGAAAAGGCTTGGGAAGAGATGCGCTCGCTCG AGTCGATTCAAGGCCAACATCGGACCCTTGTCGTCGCGCACAATGCCATC AACCAAGCTCTGCTGTGGACGGCGCTCGGCTGCGATACGTCGTACTTCAG AAAGCTCTCCTGGCCCAACTGCGCGGTGTTGGAGTTGCAGTGGAGGCGGG GGGCGGCGCGGGCCGAGCGGTACCGCTGGGTGATCCCCGAACCGTCACCG TTTGTGGAAGCGTCGGACGCGGCTCGACTGCTAAAGACGAGTGTGGATGA CACGCAGTACACCCTGTGA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig996:6427..11795-

>mRNA_L-digitata_M_contig996.3.1 ID=mRNA_L-digitata_M_contig996.3.1|Name=mRNA_L-digitata_M_contig996.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=942bp|location=Sequence derived from alignment at L-digitata_M_contig996:6427..11795- (Laminaria digitata LdigPH10_18mv male)
ATGAGGAGACCGGGTAGCCGCCCGCGGTTCGTACCAGGAGGGCTTGTGCT
AGCTCTGGCCACGGCGAGGAAGAGCGTAACGCGGGCTTTCAACTTCGCCG
GGTGCAGCAGTGTCCACGGACGGCGGGGGCATGCCGGCAGCGGGAAGCGG
TTGTGGGCGGCGGCGCAATCATCGTCTACTGCAACCCCACCTGAATCACC
CTTGCCTCCCAAAGATGGTGATCTTGTCTCGTTCTTTTTGCTTCGGCACG
GTCAAACCAACTTCAACGCCATAGGGCGTATCCAGGGGACGTTAGACTCG
TCGATCCTAACCGAACAGGGTATCTTACAAGCCTTGGAGGCCGGGAAGAC
GCTTGCATCGACGGTTGACCTCGACCTGGGGCCCACGGTGATAGTGTCGC
CTATGGGCAGGGCGCAGCAGACGCTCGCCTGCGTGCGGGAGGAACTCTGT
AAGGGGGAGAGGGACTTCGAGACGGTCGAGATCGTTCCCAACATCAGGGA
GATCGAGCTGTTCGAGTGGCAAGGAGAGCTGAAGGAAGACATCATAAAGA
ACAGTCCTGAGGAGTACTCGGCGTGGGTGGCGGATCCGTCCAATTTCAAC
TTTTCGGGGAGGTACCCCGCGAGGGACCTGTGGGAGCGAGCGGAAAAGGC
TTGGGAAGAGATGCGCTCGCTCGAGTCGATTCAAGGCCAACATCGGACCC
TTGTCGTCGCGCACAATGCCATCAACCAAGCTCTGCTGTGGACGGCGCTC
GGCTGCGATACGTCGTACTTCAGAAAGCTCTCCTGGCCCAACTGCGCGGT
GTTGGAGTTGCAGTGGAGGCGGGGGGCGGCGCGGGCCGAGCGGTACCGCT
GGGTGATCCCCGAACCGTCACCGTTTGTGGAAGCGTCGGACGCGGCTCGA
CTGCTAAAGACGAGTGTGGATGACACGCAGTACACCCTGTGA
back to top