mRNA_L-digitata_M_contig99593.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99593.1.1
Unique NamemRNA_L-digitata_M_contig99593.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig99593.1.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 8.480e-40
Identity = 67/80 (83.75%), Postives = 75/80 (93.75%), Query Frame = 1 
Query:   25 GYHRYLRRLLSSYFASPSLAHSIQLEFNYRWNVRMAVKNRGLRKEVGGFYDQFEIEIIQRDTASWYPDSPMFSDWVSALD 264
            GYHRY+RRLLS+Y ASPSLAHS+ LEFNYRWNVRMAVKNRGL +EVG F+DQFEIEIIQR+TASWYPDSP+F +WVSALD
Sbjct:  341 GYHRYVRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALD 420
[Close]
BLAST of mRNA_L-digitata_M_contig99593.1.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.620e-39
Identity = 68/80 (85.00%), Postives = 75/80 (93.75%), Query Frame = 1 
Query:   25 GYHRYLRRLLSSYFASPSLAHSIQLEFNYRWNVRMAVKNRGLRKEVGGFYDQFEIEIIQRDTASWYPDSPMFSDWVSALD 264
            GYHRYLRRLLS+Y ASPSLAHS+ LEFNYRWNVRMAVKNRGL +EVG F+DQFEIEIIQR+TASWYPDSP+F +WVSALD
Sbjct:  338 GYHRYLRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALD 417
[Close]
BLAST of mRNA_L-digitata_M_contig99593.1.1 vs. uniprot
Match: A0A6H5K9U3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U3_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 2.160e-39
Identity = 65/80 (81.25%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:   25 GYHRYLRRLLSSYFASPSLAHSIQLEFNYRWNVRMAVKNRGLRKEVGGFYDQFEIEIIQRDTASWYPDSPMFSDWVSALD 264
            GYHRYLRRLLSSY ASP+LAHS+ LEFN+RWNVRMAVKNRGL +EVG F+DQ+E EIIQRDTASWYPD+P+F +WVSALD
Sbjct:   68 GYHRYLRRLLSSYCASPALAHSVLLEFNFRWNVRMAVKNRGLPREVGEFFDQYETEIIQRDTASWYPDNPLFPEWVSALD 147
[Close]
BLAST of mRNA_L-digitata_M_contig99593.1.1 vs. uniprot
Match: A0A6H5KP32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP32_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.850e-28
Identity = 52/72 (72.22%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:   49 LLSSYFASPSLAHSIQLEFNYRWNVRMAVKNRGLRKEVGGFYDQFEIEIIQRDTASWYPDSPMFSDWVSALD 264
            LLS+Y ASP+LAHSI LEFN+RWN++MAVKNR L KE+GG +DQF+IEIIQR+T SW  DSP+FS+ VSALD
Sbjct:   84 LLSTYCASPALAHSILLEFNHRWNIKMAVKNRNLPKEIGGCFDQFDIEIIQRETTSWDLDSPVFSERVSALD 155
[Close]
BLAST of mRNA_L-digitata_M_contig99593.1.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.090e-26
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:   25 GYHRYLRRLLSSYFASPSLAHSIQLEFNYRWNVRMAVKNRGLRKEVGGFYDQFEIEIIQRDTASWYPDSPMFSDWVSALD 264
            GYHRYLR LL+SY ASPSLA S+ LEFNYRWN+RM +KNRGL   +GG Y+Q+ +E IQRDTA W    P+F +W +A+D
Sbjct:  661 GYHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAID 740
[Close]
BLAST of mRNA_L-digitata_M_contig99593.1.1 vs. uniprot
Match: A0A6H5KSM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM2_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.790e-26
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:   16 SCNGYHRYLRRLLSSYFASPSLAHSIQLEFNYRWNVRMAVKNRGLRKEVGGFYDQFEIEIIQRDTASWYPDSPMFSD 246
            S  GYHR L RLLS+Y ASP+LAHSI LEF +RWN++MAVKN  L KE+GG +DQF+IEIIQR+T SW PD P+FS+
Sbjct:  357 STEGYHRLLLRLLSTYCASPALAHSILLEFKHRWNIKMAVKN--LSKEIGGCFDQFDIEIIQRETTSWDPDCPVFSE 431
[Close]
BLAST of mRNA_L-digitata_M_contig99593.1.1 vs. uniprot
Match: A0A6H5K811_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K811_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.770e-25
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:   16 SCNGYHRYLRRLLSSYFASPSLAHSIQLEFNYRWNVRMAVKNRGLRKEVGGFYDQFEIEIIQRDTASWYPDSPMFSDWVSALD 264
            S  GYHRYL+ LL+++ ASP + H++ +EFN+RWN+  AV+NRG+  E+GGF  Q+ I+ IQR TA WYPD P+FS WV+  D
Sbjct:  412 STEGYHRYLKTLLAAFCASPEVCHTVLMEFNHRWNISRAVENRGMAAEIGGFSHQYMIDHIQRATAEWYPDQPLFSGWVAPAD 494
[Close]
BLAST of mRNA_L-digitata_M_contig99593.1.1 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 3.930e-24
Identity = 43/55 (78.18%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:  100 EFNYRWNVRMAVKNRGLRKEVGGFYDQFEIEIIQRDTASWYPDSPMFSDWVSALD 264
            EFNYRWN+RMAVKNRGL +EVG F+DQFEIEIIQR+T+SWYPD+P+F +W+SALD
Sbjct:  659 EFNYRWNIRMAVKNRGLPREVGEFFDQFEIEIIQRETSSWYPDNPLFPEWISALD 713
[Close]
BLAST of mRNA_L-digitata_M_contig99593.1.1 vs. uniprot
Match: A0A6H5JQG2_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.590e-23
Identity = 42/80 (52.50%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:   25 GYHRYLRRLLSSYFASPSLAHSIQLEFNYRWNVRMAVKNRGLRKEVGGFYDQFEIEIIQRDTASWYPDSPMFSDWVSALD 264
            GYHRYL+ LL+ + ASP + H++ +EFN+RWN+   V+NRG+  E+G F  Q+ I+ IQR TA WYPD P+FS WV+  D
Sbjct:  744 GYHRYLKTLLAYFCASPEVCHTVLMEFNHRWNISRTVENRGMSAEIGRFSHQYMIDHIQRVTAEWYPDQPLFSGWVAPAD 823
[Close]
BLAST of mRNA_L-digitata_M_contig99593.1.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 3.500e-18
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   25 GYHRYLRRLLSSYFASPSLAHSIQLEFNYRWNVRMAVKNRGLRKEVGGFYDQFEIEIIQRDT 210
            GYHRYLR LL+SY ASP+LA S+ LEFN+RWN++M VKNRGL  E+G  Y+Q  +EIIQR T
Sbjct:  705 GYHRYLRTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVEIIQRAT 766
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99593.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JPK9_9PHAE8.480e-4083.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLP1_9PHAE1.620e-3985.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U3_9PHAE2.160e-3981.25Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP32_9PHAE1.850e-2872.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRJ6_9PHAE1.090e-2662.503'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KSM2_9PHAE4.790e-2667.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K811_9PHAE1.770e-2554.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV1_ECTSI3.930e-2478.18Similar to Werner syndrome protein n=1 Tax=Ectocar... [more]
A0A6H5JQG2_9PHAE6.590e-2352.503'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7G3Q9_ECTSI3.500e-1866.133'-5' exonuclease domain-containing protein n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99593contigL-digitata_M_contig99593:475..738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIV1
Preferred nameWRN
PFAMsDEAD,DNA_pol_A_exo1,HRDC,HTH_40,Helicase_C,RQC,RecQ_Zn_bind
Model size264
Max annot lvl2759|Eukaryota
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons1
Evalue6.44e-25
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
Cds size264
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408654.8732934-CDS-L-digitata_M_contig99593:474..7381682408654.8732934-CDS-L-digitata_M_contig99593:474..738Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99593 475..738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99593.1.1prot_L-digitata_M_contig99593.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99593 475..738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99593.1.1

>prot_L-digitata_M_contig99593.1.1 ID=prot_L-digitata_M_contig99593.1.1|Name=mRNA_L-digitata_M_contig99593.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=88bp
ARFCHSCNGYHRYLRRLLSSYFASPSLAHSIQLEFNYRWNVRMAVKNRGL
RKEVGGFYDQFEIEIIQRDTASWYPDSPMFSDWVSALD
back to top

mRNA from alignment at L-digitata_M_contig99593:475..738+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99593.1.1 ID=mRNA_L-digitata_M_contig99593.1.1|Name=mRNA_L-digitata_M_contig99593.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=264bp|location=Sequence derived from alignment at L-digitata_M_contig99593:475..738+ (Laminaria digitata LdigPH10_18mv male)
GCACGTTTTTGTCATTCTTGTAATGGTTATCATCGTTACCTCCGCAGGCT
GCTATCGTCGTACTTCGCTTCTCCTTCGCTAGCACACTCAATTCAGCTGG
AGTTCAACTACCGCTGGAACGTTAGGATGGCCGTGAAGAACCGCGGCCTG
CGGAAGGAGGTCGGAGGGTTTTACGACCAGTTTGAGATAGAGATAATCCA
ACGCGATACGGCCAGCTGGTATCCAGACAGCCCGATGTTTTCTGATTGGG
TTTCTGCACTTGAC
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig99593:475..738+

>mRNA_L-digitata_M_contig99593.1.1 ID=mRNA_L-digitata_M_contig99593.1.1|Name=mRNA_L-digitata_M_contig99593.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=264bp|location=Sequence derived from alignment at L-digitata_M_contig99593:475..738+ (Laminaria digitata LdigPH10_18mv male)
GCACGTTTTTGTCATTCTTGTAATGGTTATCATCGTTACCTCCGCAGGCT
GCTATCGTCGTACTTCGCTTCTCCTTCGCTAGCACACTCAATTCAGCTGG
AGTTCAACTACCGCTGGAACGTTAGGATGGCCGTGAAGAACCGCGGCCTG
CGGAAGGAGGTCGGAGGGTTTTACGACCAGTTTGAGATAGAGATAATCCA
ACGCGATACGGCCAGCTGGTATCCAGACAGCCCGATGTTTTCTGATTGGG
TTTCTGCACTTGAC
back to top