mRNA_L-digitata_M_contig9959.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig9959.2.1
Unique NamemRNA_L-digitata_M_contig9959.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig9959.2.1 vs. uniprot
Match: D8LCC0_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC0_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.700e-26
Identity = 59/98 (60.20%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:    1 EYLAAPEHEKKAFHERGLRHLGAEDVQMPSGRVLTASTTIDVLVVYTKASMVASSADEPALITADQMETNIITSYEWANQALADSGVDATLNVVHMAQ 294
            EYL A   E++ FHERG+R L + +VQMPSGRVLTA+T IDV+V+YT A+M+ SS     L+T  QMET IIT+Y  AN ALADSG+ AT+NVVH+A+
Sbjct:  203 EYLVASAPEQEVFHERGVRRLSSAEVQMPSGRVLTATTEIDVMVLYTPAAMI-SSGTAGTLLTNQQMETEIITAYATANDALADSGISATINVVHVAE 299
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BLAST of mRNA_L-digitata_M_contig9959.2.1 vs. uniprot
Match: D8LC56_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC56_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.130e-18
Identity = 47/98 (47.96%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:    1 EYLAAPEHEKKAFHERGLRHLGAEDVQMPSGRVLTASTTIDVLVVYTKASMVASSADEPALITADQMETNIITSYEWANQALADSGVDATLNVVHMAQ 294
            EY +A    ++AFHERGLR L  ++V MP GRVL++ T IDVLV+YT+ +M+ S + + A  +  QME++I T+Y+ AN AL+ SGV+ ++ +VHM Q
Sbjct:  180 EYRSASPEGQEAFHERGLRRLSEDNVVMPGGRVLSSETVIDVLVLYTEKAMLESDSGDGAGRSIAQMESDIATAYQGANNALSASGVNFSVRIVHMEQ 277
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BLAST of mRNA_L-digitata_M_contig9959.2.1 vs. uniprot
Match: A0A6H5JDN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.640e-18
Identity = 47/98 (47.96%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:    1 EYLAAPEHEKKAFHERGLRHLGAEDVQMPSGRVLTASTTIDVLVVYTKASMVASSADEPALITADQMETNIITSYEWANQALADSGVDATLNVVHMAQ 294
            EY +A    ++AFHERGLR L  ++V MP GRVL++ T IDVLV+YT+ +M+ S++ + A  +  QME++I T+Y+ AN AL+ SGV+ ++ +VHM Q
Sbjct:  156 EYRSASPEGQEAFHERGLRRLNEDNVVMPGGRVLSSETVIDVLVLYTEKAMLESNSVDGAGRSIAQMESDIATAYQGANNALSASGVNFSVRIVHMEQ 253
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9959.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCC0_ECTSI1.700e-2660.20Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarp... [more]
D8LC56_ECTSI1.130e-1847.96Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarp... [more]
A0A6H5JDN0_9PHAE1.640e-1847.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9959contigL-digitata_M_contig9959:5647..6365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LC56
PFAMsReprolysin_3,Reprolysin_4
Model size294
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.86e-19
EggNOG OGs2E79G@1|root,2SDWE@2759|Eukaryota
DescriptionMetallo-peptidase family M12B Reprolysin-like
Cds size294
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408654.8180718-CDS-L-digitata_M_contig9959:5646..58231682408654.8180718-CDS-L-digitata_M_contig9959:5646..5823Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9959 5647..5823 -
1682408654.8325975-CDS-L-digitata_M_contig9959:6248..63651682408654.8325975-CDS-L-digitata_M_contig9959:6248..6365Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9959 6249..6365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9959.2.1prot_L-digitata_M_contig9959.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig9959 5647..6365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig9959.2.1

>prot_L-digitata_M_contig9959.2.1 ID=prot_L-digitata_M_contig9959.2.1|Name=mRNA_L-digitata_M_contig9959.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=98bp
EYLAAPEHEKKAFHERGLRHLGAEDVQMPSGRVLTASTTIDVLVVYTKAS
MVASSADEPALITADQMETNIITSYEWANQALADSGVDATLNVVHMAQ
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mRNA from alignment at L-digitata_M_contig9959:5647..6365-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig9959.2.1 ID=mRNA_L-digitata_M_contig9959.2.1|Name=mRNA_L-digitata_M_contig9959.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=719bp|location=Sequence derived from alignment at L-digitata_M_contig9959:5647..6365- (Laminaria digitata LdigPH10_18mv male)
GAATATCTGGCCGCCCCTGAGCACGAGAAGAAGGCGTTCCACGAGAGAGG
CCTTCGTCACCTCGGCGCTGAGGACGTGCAGATGCCGAGTGGTCGAGTCC
TCACCGCTTCAACCACCGTGAGAGAGAGCACCGCAAACATTTTTTTTTTT
TCGTCACAATCTACACAAAAAGGGCAGCTTCGCCAACTACGTACAACATA
ACATAGCTCATCGACCGTAATGGCCGCGTTTAGCTTCCACCCGCTCCAAC
CACCGTAAGAAAGAAACACCGCGCAGCTTGTATTTTGCCGTCACATTCTA
CGTCAAAGAGCACAGCTTCACCAACTACCCACCAGTACAACATAGCTCAT
TGATCGCAAGCGCCGCCTTAACTCTTTTATAACGGCACTGCACATCAAAA
TATACCTCTAATTTCAAGTAATTTGTCCCCGAAACGGGAGCGCAGTCCTA
AAGGGGTTTAATTTTCGGATGCGTTGTACGTACAATTTTTTTGCTGACAA
TCCACAAAAACAAACTTGCTGATCCCTCGCTCTTCTGCCCAGATCGACGT
CCTGGTAGTCTACACGAAAGCCTCCATGGTGGCCTCCAGCGCGGACGAAC
CAGCGCTGATAACTGCGGACCAGATGGAAACGAACATCATCACGTCTTAC
GAGTGGGCCAACCAAGCCCTCGCGGACTCTGGCGTCGACGCTACTCTGAA
CGTTGTCCACATGGCCCAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig9959:5647..6365-

>mRNA_L-digitata_M_contig9959.2.1 ID=mRNA_L-digitata_M_contig9959.2.1|Name=mRNA_L-digitata_M_contig9959.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=294bp|location=Sequence derived from alignment at L-digitata_M_contig9959:5647..6365- (Laminaria digitata LdigPH10_18mv male)
GAATATCTGGCCGCCCCTGAGCACGAGAAGAAGGCGTTCCACGAGAGAGG
CCTTCGTCACCTCGGCGCTGAGGACGTGCAGATGCCGAGTGGTCGAGTCC
TCACCGCTTCAACCACCATCGACGTCCTGGTAGTCTACACGAAAGCCTCC
ATGGTGGCCTCCAGCGCGGACGAACCAGCGCTGATAACTGCGGACCAGAT
GGAAACGAACATCATCACGTCTTACGAGTGGGCCAACCAAGCCCTCGCGG
ACTCTGGCGTCGACGCTACTCTGAACGTTGTCCACATGGCCCAA
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