mRNA_L-digitata_M_contig99576.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
|
Overview
Homology
BLAST of mRNA_L-digitata_M_contig99576.2.1 vs. uniprot
Match: A0A2G2E2E3_9GAMM (Copper resistance protein CopA n=5 Tax=root TaxID=1 RepID=A0A2G2E2E3_9GAMM) HSP 1 Score: 423 bits (1088), Expect = 5.030e-144 Identity = 211/213 (99.06%), Postives = 212/213 (99.53%), Query Frame = 1
Query: 1 LTLKLPINPISTFNPTRRRFVHGIAAGGVLASFPGLLYAMDNSKQLAYRGTAPVLTGQTIELVVDQSPVNFTGVTRMATTINGSIPAPTLRLREGDEVTIRVINRLKVATSIHWHGIILPYQMDGVPGISFQGIEPGETFVYQFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPREGQSLVEQSHLDADRDYVMQLSDWTDEDPMAVFSKLKV 639
+TLKLPI PISTFNPTRRRFVHGIAAGGVLASFPGLLYAMDNSKQLAYRGTAPVLTGQTIELVVDQSPVNFTGVTRMATTINGSIPAPTLRLREGDEVTIRVINRLKVATSIHWHGIILPYQMDGVPGISFQGIEPGETFVYQFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPREGQSLVEQSHLDADRDYVMQLSDWTDEDPMAVFSKLKV
Sbjct: 1 MTLKLPIYPISTFNPTRRRFVHGIAAGGVLASFPGLLYAMDNSKQLAYRGTAPVLTGQTIELVVDQSPVNFTGVTRMATTINGSIPAPTLRLREGDEVTIRVINRLKVATSIHWHGIILPYQMDGVPGISFQGIEPGETFVYQFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPREGQSLVEQSHLDADRDYVMQLSDWTDEDPMAVFSKLKV 213
BLAST of mRNA_L-digitata_M_contig99576.2.1 vs. uniprot
Match: A0A2D9KS14_9GAMM (Copper resistance protein CopA n=4 Tax=unclassified Methylophaga TaxID=2629249 RepID=A0A2D9KS14_9GAMM) HSP 1 Score: 332 bits (851), Expect = 2.070e-108 Identity = 168/207 (81.16%), Postives = 179/207 (86.47%), Query Frame = 1
Query: 19 INPISTFNPTRRRFVHGIAAGGVLASFPGLLYAMDNSKQLAYRGTAPVLTGQTIELVVDQSPVNFTGVTRMATTINGSIPAPTLRLREGDEVTIRVINRLKVATSIHWHGIILPYQMDGVPGISFQGIEPGETFVYQFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPREGQSLVEQSHLDADRDYVMQLSDWTDEDPMAVFSKLKV 639
+ P+ FNP RRRFV GIAAGGVLASFP LL A + A RGTAPVLTGQ I+L V +S VNFTGVTR+ATTINGSIPAPTLRLREGD+VTIRV NRLKV TSIHWHGIILPYQMDGVPGISF GIEPGETFVYQFKL+QSGTYWYHSHSGFQEMTGMYGALIIEPRE QS + H+ ADRDYVM LSDWTDEDPM+VFSKLKV
Sbjct: 1 MQPVLNFNPNRRRFVQGIAAGGVLASFPMLLNAESYPNKQATRGTAPVLTGQVIDLTVAESLVNFTGVTRVATTINGSIPAPTLRLREGDDVTIRVTNRLKVPTSIHWHGIILPYQMDGVPGISFGGIEPGETFVYQFKLKQSGTYWYHSHSGFQEMTGMYGALIIEPREMQSDSAKDHISADRDYVMLLSDWTDEDPMSVFSKLKV 207
BLAST of mRNA_L-digitata_M_contig99576.2.1 vs. uniprot
Match: A0A2N8LXR7_9GAMM (Copper resistance protein A n=5 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2N8LXR7_9GAMM) HSP 1 Score: 322 bits (825), Expect = 2.240e-104 Identity = 158/204 (77.45%), Postives = 178/204 (87.25%), Query Frame = 1
Query: 28 ISTFNPTRRRFVHGIAAGGVLASFPGLLYAMDNSKQLAYRGTAPVLTGQTIELVVDQSPVNFTGVTRMATTINGSIPAPTLRLREGDEVTIRVINRLKVATSIHWHGIILPYQMDGVPGISFQGIEPGETFVYQFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPREGQSLVEQSHLDADRDYVMQLSDWTDEDPMAVFSKLKV 639
+ TF+ TRR FV G+ AGGVLASFP LL+A + + GTAPVL+GQ+I+LVV ++PVNFTGV RMATTINGSIPAPTLRLREGDEVTIRV NRLKV TSIHWHGIILP+QMDGVPGISF+GI PGETFVY+FKLQQSGTYWYHSHSGFQEMTGMYGALI+EPREG+ E + ADRDYV+QLSDWTDEDPM+VF+KLKV
Sbjct: 1 MKTFSATRRHFVQGLVAGGVLASFPALLHAGGRLENQTHTGTAPVLSGQSIDLVVAETPVNFTGVIRMATTINGSIPAPTLRLREGDEVTIRVTNRLKVPTSIHWHGIILPFQMDGVPGISFRGIAPGETFVYRFKLQQSGTYWYHSHSGFQEMTGMYGALIVEPREGRGSREGDRIRADRDYVVQLSDWTDEDPMSVFAKLKV 204
BLAST of mRNA_L-digitata_M_contig99576.2.1 vs. uniprot
Match: A0A5S3T3M9_9GAMM (Copper resistance system multicopper oxidase (Fragment) n=1 Tax=Pseudoalteromonas sp. S4741 TaxID=579563 RepID=A0A5S3T3M9_9GAMM) HSP 1 Score: 296 bits (757), Expect = 3.020e-99 Identity = 145/206 (70.39%), Postives = 170/206 (82.52%), Query Frame = 1
Query: 22 NPISTFNPTRRRFVHGIAAGGVLASFPGLLYAMDNSKQLAYRGTAPVLTGQTIELVVDQSPVNFTGVTRMATTINGSIPAPTLRLREGDEVTIRVINRLKVATSIHWHGIILPYQMDGVPGISFQGIEPGETFVYQFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPREGQSLVEQSHLDADRDYVMQLSDWTDEDPMAVFSKLKV 639
NP+ + RRRFV G+AAGG+LA+FP +L+A + GT P L+G+ I+LV+D+SPVNFTGV RMATTINGSIPAPTLRLREGD+VTIRV N+L V +SIHWHGIILPYQMDGVPGISF+GI PGETFVY+FKLQQSGTYWYHSHSGFQEMTGMYGALIIEPRE + + AD ++V+QLSDWTD+DPM +F KLKV
Sbjct: 5 NPLHQISTPRRRFVQGLAAGGILAAFPSILHAASSLVAGTITGTVPELSGEIIDLVIDESPVNFTGVVRMATTINGSIPAPTLRLREGDDVTIRVTNKLSVPSSIHWHGIILPYQMDGVPGISFKGIMPGETFVYKFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPRE------KDIISADNEHVIQLSDWTDDDPMDLFRKLKV 204
BLAST of mRNA_L-digitata_M_contig99576.2.1 vs. uniprot
Match: A0A2D5FA50_9GAMM (Copper-containing nitrite reductase n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D5FA50_9GAMM) HSP 1 Score: 301 bits (770), Expect = 3.030e-96 Identity = 151/198 (76.26%), Postives = 165/198 (83.33%), Query Frame = 1
Query: 46 TRRRFVHGIAAGGVLASFPGLLYAMDNSKQLAYRGTAPVLTGQTIELVVDQSPVNFTGVTRMATTINGSIPAPTLRLREGDEVTIRVINRLKVATSIHWHGIILPYQMDGVPGISFQGIEPGETFVYQFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPREGQSLVEQSHLDADRDYVMQLSDWTDEDPMAVFSKLKV 639
+RRRFV G+AAGGVLA PG L A N G APVLTG+ I+L + ++PVNFTGVTRMATTINGSIP PTLRLREGDEVTIRV NRL V+TSIHWHGIILP+QMDGVPGISF GI PGETF Y+FKLQQSGTYWYHSHSGFQEMTGMYGALIIEPREG+S+ ADRDYV+QLSDWTDEDPM VF KLK+
Sbjct: 13 SRRRFVQGLAAGGVLALSPGWLQARANGGGSTQTGLAPVLTGREIDLTIAETPVNFTGVTRMATTINGSIPGPTLRLREGDEVTIRVTNRLPVSTSIHWHGIILPFQMDGVPGISFSGIAPGETFTYRFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPREGESIR------ADRDYVVQLSDWTDEDPMRVFGKLKI 204
BLAST of mRNA_L-digitata_M_contig99576.2.1 vs. uniprot
Match: A0A1E8CJ79_9GAMM (Copper resistance protein CopA n=6 Tax=root TaxID=1 RepID=A0A1E8CJ79_9GAMM) HSP 1 Score: 299 bits (765), Expect = 1.610e-95 Identity = 151/201 (75.12%), Postives = 168/201 (83.58%), Query Frame = 1
Query: 40 NPTRRRFVHGIAAGGVLASFPGLLYAMDNS-KQLAYRGTAPVLTGQTIELVVDQSPVNFTGVTRMATTINGSIPAPTLRLREGDEVTIRVINRLKVATSIHWHGIILPYQMDGVPGISFQGIEPGETFVYQFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPREGQSLVEQSHLDADRDYVMQLSDWTDEDPMAVFSKLKV 639
N RRRFV G+AAGGVLA+FP +L A + L + GTAPVL+G IELV+ +SPVNFTG RMATTINGSIPAPTLRLREG+EVTIRV N L VATSIHWHGIILPYQMDGVPGISF GI PGETF Y+F LQQSGTYWYHSHSGFQE+TGMYGALI+EPR+G+++ ADRDYV+QLSDWTDEDPM VFSKLKV
Sbjct: 13 NVNRRRFVQGLAAGGVLAAFPAVLQAASRAGATLTHTGTAPVLSGNQIELVIAESPVNFTGEVRMATTINGSIPAPTLRLREGEEVTIRVTNHLAVATSIHWHGIILPYQMDGVPGISFDGIAPGETFEYRFTLQQSGTYWYHSHSGFQEITGMYGALIVEPRDGETIR------ADRDYVVQLSDWTDEDPMRVFSKLKV 207
BLAST of mRNA_L-digitata_M_contig99576.2.1 vs. uniprot
Match: G7EPR8_9GAMM (Copper resistance protein A n=35 Tax=Proteobacteria TaxID=1224 RepID=G7EPR8_9GAMM) HSP 1 Score: 296 bits (758), Expect = 2.380e-94 Identity = 147/206 (71.36%), Postives = 171/206 (83.01%), Query Frame = 1
Query: 22 NPISTFNPTRRRFVHGIAAGGVLASFPGLLYAMDNSKQLAYRGTAPVLTGQTIELVVDQSPVNFTGVTRMATTINGSIPAPTLRLREGDEVTIRVINRLKVATSIHWHGIILPYQMDGVPGISFQGIEPGETFVYQFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPREGQSLVEQSHLDADRDYVMQLSDWTDEDPMAVFSKLKV 639
NP+ + RRRFV G+AAGGVLA+FP +L+A + GTAP L+G+ I+LV+D+SPVNFTGV RMATTINGSIPAPTLRLREGD+VTIRV N+L V +SIHWHGIILPYQMDGVPGISF+GI PGETFVY+FKLQQSGTYWYHSHSGFQEMTGMYGALIIEPRE + + AD ++V+QLSDWTD+DPM +F KLKV
Sbjct: 5 NPLHQVSTPRRRFVQGLAAGGVLAAFPSVLHAASSLIAGTSTGTAPELSGEIIDLVIDESPVNFTGVVRMATTINGSIPAPTLRLREGDDVTIRVTNKLSVPSSIHWHGIILPYQMDGVPGISFKGIMPGETFVYKFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPRE------KDIISADNEHVIQLSDWTDDDPMDLFRKLKV 204
BLAST of mRNA_L-digitata_M_contig99576.2.1 vs. uniprot
Match: A0A2K9A815_9GAMM (Copper resistance system multicopper oxidase n=3 Tax=Kangiella TaxID=261963 RepID=A0A2K9A815_9GAMM) HSP 1 Score: 293 bits (750), Expect = 4.560e-93 Identity = 149/200 (74.50%), Postives = 171/200 (85.50%), Query Frame = 1
Query: 40 NPTRRRFVHGIAAGGVLASFPGLLYAMDNSKQLAYRGTAPVLTGQTIELVVDQSPVNFTGVTRMATTINGSIPAPTLRLREGDEVTIRVINRLKVATSIHWHGIILPYQMDGVPGISFQGIEPGETFVYQFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPREGQSLVEQSHLDADRDYVMQLSDWTDEDPMAVFSKLKV 639
N +RRRFV G+A GGV+A+ PG L A S L +G+APVL+G+ I+LV+ ++PVNFTGVTRMATTING+IPAPTLRLREGDEV IRVINRL VATSIHWHGI+LPYQMDGVPGISF+GI PGETF+Y+FKL+QSGTYWYHSHSGFQEMTGMYGALIIEPR G+ ADR++V+QLSDWTDEDPM VFSKLKV
Sbjct: 11 NISRRRFVQGLAVGGVMAATPGWLQAGITS--LTSQGSAPVLSGREIDLVIAETPVNFTGVTRMATTINGAIPAPTLRLREGDEVRIRVINRLPVATSIHWHGILLPYQMDGVPGISFKGIAPGETFIYRFKLRQSGTYWYHSHSGFQEMTGMYGALIIEPRLGE------RHSADREHVVQLSDWTDEDPMHVFSKLKV 202
BLAST of mRNA_L-digitata_M_contig99576.2.1 vs. uniprot
Match: A0A7W2U100_9GAMM (Copper resistance system multicopper oxidase n=1 Tax=Colwellia sp. 6M3 TaxID=2759849 RepID=A0A7W2U100_9GAMM) HSP 1 Score: 292 bits (747), Expect = 9.030e-93 Identity = 143/198 (72.22%), Postives = 167/198 (84.34%), Query Frame = 1
Query: 46 TRRRFVHGIAAGGVLASFPGLLYAMDNSKQLAYRGTAPVLTGQTIELVVDQSPVNFTGVTRMATTINGSIPAPTLRLREGDEVTIRVINRLKVATSIHWHGIILPYQMDGVPGISFQGIEPGETFVYQFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPREGQSLVEQSHLDADRDYVMQLSDWTDEDPMAVFSKLKV 639
+RRRFV G+AAGGVLA+FP +++A+ + G AP L+G+ I+LV+ +SPVNFTGV RMATT+NGSIPAPTLRL+EGD+VTIRV N L V +SIHWHG+ILPYQMDGVPGISF+GI PGETFVY+FKLQQSGTYWYHSHSGFQEMTGMYGALIIEPRE + + AD+DYV+QLSDWTDEDPM VF KLKV
Sbjct: 13 SRRRFVLGLAAGGVLAAFPSIIHAVPSLTASTITGNAPELSGKVIDLVIGESPVNFTGVVRMATTVNGSIPAPTLRLKEGDDVTIRVTNNLAVPSSIHWHGLILPYQMDGVPGISFKGIMPGETFVYKFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPRE------KDIISADKDYVIQLSDWTDEDPMEVFRKLKV 204
BLAST of mRNA_L-digitata_M_contig99576.2.1 vs. uniprot
Match: A0A2D4S4Z4_9GAMM (Copper resistance protein CopA n=2 Tax=Oceanospirillaceae TaxID=135620 RepID=A0A2D4S4Z4_9GAMM) HSP 1 Score: 291 bits (745), Expect = 1.710e-92 Identity = 148/198 (74.75%), Postives = 166/198 (83.84%), Query Frame = 1
Query: 46 TRRRFVHGIAAGGVLASFPGLLYAMDNSKQLAYRGTAPVLTGQTIELVVDQSPVNFTGVTRMATTINGSIPAPTLRLREGDEVTIRVINRLKVATSIHWHGIILPYQMDGVPGISFQGIEPGETFVYQFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPREGQSLVEQSHLDADRDYVMQLSDWTDEDPMAVFSKLKV 639
+RRRFV G+AAGGV+AS P +L A + S+Q +GTAP L+G+ IEL V QSPVNFTG +R+ATTINGSIPAPTLRLREGDEV I+V NRL V TSIHWHGIILPYQMDGVPGISF+GI PGETF YQFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPR + + ADRD+V+ LSDWTD+DPMAVF KLKV
Sbjct: 15 SRRRFVQGLAAGGVIASTPSMLQANEQSRQ-TIQGTAPELSGKVIELEVAQSPVNFTGSSRLATTINGSIPAPTLRLREGDEVIIKVTNRLSVPTSIHWHGIILPYQMDGVPGISFKGIAPGETFTYQFKLQQSGTYWYHSHSGFQEMTGMYGALIIEPRSKEII------QADRDHVVLLSDWTDDDPMAVFGKLKV 205 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99576.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig99576.2.1 >prot_L-digitata_M_contig99576.2.1 ID=prot_L-digitata_M_contig99576.2.1|Name=mRNA_L-digitata_M_contig99576.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=213bp LTLKLPINPISTFNPTRRRFVHGIAAGGVLASFPGLLYAMDNSKQLAYRGback to top mRNA from alignment at L-digitata_M_contig99576:315..953+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig99576.2.1 ID=mRNA_L-digitata_M_contig99576.2.1|Name=mRNA_L-digitata_M_contig99576.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=639bp|location=Sequence derived from alignment at L-digitata_M_contig99576:315..953+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig99576:315..953+ >mRNA_L-digitata_M_contig99576.2.1 ID=mRNA_L-digitata_M_contig99576.2.1|Name=mRNA_L-digitata_M_contig99576.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=639bp|location=Sequence derived from alignment at L-digitata_M_contig99576:315..953+ (Laminaria digitata LdigPH10_18mv male)back to top |