mRNA_L-digitata_M_contig99562.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99562.2.1
Unique NamemRNA_L-digitata_M_contig99562.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig99562.2.1 vs. uniprot
Match: D8LNS4_ECTSI (BAX inhibitor motif-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNS4_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 5.350e-36
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = 1 
Query:    1 GSLTAYAFRTNPKHELTQLGAGLYSAGNALGMFCLMKLFFFRGHRASDLALSCFATLFFSLYLVYDTYR 207
            GSLTAYAFRTNPKHELTQ GAGLYSAGNAL +FCLMK+FFFRGHRASDLALSC ATLFFSLYLV+DTYR
Sbjct:  264 GSLTAYAFRTNPKHELTQFGAGLYSAGNALSLFCLMKIFFFRGHRASDLALSCLATLFFSLYLVFDTYR 332
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99562.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNS4_ECTSI5.350e-3691.30BAX inhibitor motif-containing protein n=2 Tax=Ect... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99562contigL-digitata_M_contig99562:635..844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LNS4
PFAMsBax1-I
Model size210
Max annot lvl2759|Eukaryota
KEGG koko:K06890
Hectar predicted targeting categorysignal anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005783,GO:0006915,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008219,GO:0009987,GO:0010033,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0019722,GO:0019932,GO:0023052,GO:0030968,GO:0031224,GO:0033554,GO:0034620,GO:0034976,GO:0035556,GO:0035966,GO:0035967,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071310
Exons1
Evalue8.77e-37
EggNOG OGsCOG0670@1|root,KOG2322@2759|Eukaryota
Descriptionnegative regulation of Fas signaling pathway
Cds size210
COG categoryA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408654.4257047-CDS-L-digitata_M_contig99562:634..8441682408654.4257047-CDS-L-digitata_M_contig99562:634..844Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99562 635..844 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99562.2.1prot_L-digitata_M_contig99562.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99562 635..844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99562.2.1

>prot_L-digitata_M_contig99562.2.1 ID=prot_L-digitata_M_contig99562.2.1|Name=mRNA_L-digitata_M_contig99562.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=70bp
GSLTAYAFRTNPKHELTQLGAGLYSAGNALGMFCLMKLFFFRGHRASDLA
LSCFATLFFSLYLVYDTYR*
back to top

mRNA from alignment at L-digitata_M_contig99562:635..844+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99562.2.1 ID=mRNA_L-digitata_M_contig99562.2.1|Name=mRNA_L-digitata_M_contig99562.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=210bp|location=Sequence derived from alignment at L-digitata_M_contig99562:635..844+ (Laminaria digitata LdigPH10_18mv male)
GGGTCTCTGACGGCCTACGCCTTCCGCACGAACCCGAAGCACGAGCTGAC
CCAGCTCGGCGCGGGGCTGTACTCCGCCGGGAACGCCCTGGGGATGTTCT
GCCTCATGAAGCTCTTCTTCTTCCGCGGCCACCGAGCGTCTGACCTCGCG
CTCTCCTGCTTCGCCACCCTCTTCTTCAGCCTCTACCTCGTCTACGACAC
ATACCGGTAG
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig99562:635..844+

>mRNA_L-digitata_M_contig99562.2.1 ID=mRNA_L-digitata_M_contig99562.2.1|Name=mRNA_L-digitata_M_contig99562.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=210bp|location=Sequence derived from alignment at L-digitata_M_contig99562:635..844+ (Laminaria digitata LdigPH10_18mv male)
GGGTCTCTGACGGCCTACGCCTTCCGCACGAACCCGAAGCACGAGCTGAC
CCAGCTCGGCGCGGGGCTGTACTCCGCCGGGAACGCCCTGGGGATGTTCT
GCCTCATGAAGCTCTTCTTCTTCCGCGGCCACCGAGCGTCTGACCTCGCG
CTCTCCTGCTTCGCCACCCTCTTCTTCAGCCTCTACCTCGTCTACGACAC
ATACCGGTAG
back to top