mRNA_L-digitata_M_contig9956.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig9956.1.1
Unique NamemRNA_L-digitata_M_contig9956.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9956.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9956contigL-digitata_M_contig9956:743..1480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FH54
Model size738
Max annot lvl2880.D7FH54|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.00048
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408654.3334613-UTR-L-digitata_M_contig9956:742..10601682408654.3334613-UTR-L-digitata_M_contig9956:742..1060Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig9956 743..1060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408654.3487573-CDS-L-digitata_M_contig9956:1060..14801682408654.3487573-CDS-L-digitata_M_contig9956:1060..1480Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9956 1061..1480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9956.1.1prot_L-digitata_M_contig9956.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig9956 1061..1480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig9956.1.1

>prot_L-digitata_M_contig9956.1.1 ID=prot_L-digitata_M_contig9956.1.1|Name=mRNA_L-digitata_M_contig9956.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=140bp
MVDVCKKSCLHDSCRTYPSFNVDGSKKPVYCKQHAKDGMVDVCSRRCSYY
SCLKFPTFNVAGGKKPMYCKQHAEDGMVDVYGKRCSHDSCMRWPRWGLIS
EGSASVCARHKNKIPAGRGIDFKARCKVVKCPKYSTWGLE
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mRNA from alignment at L-digitata_M_contig9956:743..1480+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig9956.1.1 ID=mRNA_L-digitata_M_contig9956.1.1|Name=mRNA_L-digitata_M_contig9956.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=738bp|location=Sequence derived from alignment at L-digitata_M_contig9956:743..1480+ (Laminaria digitata LdigPH10_18mv male)
TGCTCAAATGACTTCTGCACGAAGCAACCGCGCTACAATCTCGCCGGCAG
CAAGAAGCCGTTGTACTGCAAGCAGCATGCCAAGGACGGCATGGTCGACG
TTTACCACAGGCGTTGTCTACACAATTCTTGCACCAGGCAACCCAGCTTC
AACGTCGTAGGCAGCAACATGTCGGCGTACGGCAAGAAACAAGCTGCGAA
GTGTATGGTGAACGTCTGCGGCAGGCGGTGTTCACATTATTCTTGCACGA
CGCAACCGAGCTTCAATGTCGTCGACAGTATGGAGCAGTTGTACTGCAAG
TAGCACGCTGAGGACGGCATGGTGGATGTGTGCAAGAAGAGTTGTTTACA
CGACTCTTGCAGGACGTATCCGAGCTTCAATGTCGACGGCAGCAAGAAGC
CGGTGTACTGCAAACAACATGCCAAGGACGGCATGGTTGACGTATGCAGC
AGACGTTGTTCGTACTACTCGTGCCTGAAGTTCCCGACCTTCAATGTTGC
CGGCGGTAAGAAGCCGATGTACTGCAAACAGCATGCCGAGGACGGTATGG
TAGACGTTTACGGCAAGCGGTGCTCACACGACTCGTGCATGAGGTGGCCG
CGGTGGGGTTTAATATCTGAGGGCTCGGCCTCTGTATGCGCCAGACATAA
GAATAAGATACCAGCCGGTCGGGGTATCGACTTCAAAGCACGATGTAAGG
TGGTGAAATGTCCGAAATATTCTACGTGGGGACTCGAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig9956:743..1480+

>mRNA_L-digitata_M_contig9956.1.1 ID=mRNA_L-digitata_M_contig9956.1.1|Name=mRNA_L-digitata_M_contig9956.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=420bp|location=Sequence derived from alignment at L-digitata_M_contig9956:743..1480+ (Laminaria digitata LdigPH10_18mv male)
ATGGTGGATGTGTGCAAGAAGAGTTGTTTACACGACTCTTGCAGGACGTA
TCCGAGCTTCAATGTCGACGGCAGCAAGAAGCCGGTGTACTGCAAACAAC
ATGCCAAGGACGGCATGGTTGACGTATGCAGCAGACGTTGTTCGTACTAC
TCGTGCCTGAAGTTCCCGACCTTCAATGTTGCCGGCGGTAAGAAGCCGAT
GTACTGCAAACAGCATGCCGAGGACGGTATGGTAGACGTTTACGGCAAGC
GGTGCTCACACGACTCGTGCATGAGGTGGCCGCGGTGGGGTTTAATATCT
GAGGGCTCGGCCTCTGTATGCGCCAGACATAAGAATAAGATACCAGCCGG
TCGGGGTATCGACTTCAAAGCACGATGTAAGGTGGTGAAATGTCCGAAAT
ATTCTACGTGGGGACTCGAG
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