mRNA_L-digitata_M_contig99517.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99517.1.1
Unique NamemRNA_L-digitata_M_contig99517.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99517.1.1 vs. uniprot
Match: D7FLI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLI5_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.840e-25
Identity = 49/88 (55.68%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:    1 QFRNPHNYLADFQAELPLYKFSGALVDYLENYRLETIEASTSDVDLPLLVEELAVTMFEHGILGKTDVKLTQAWLMDMESIGYEATST 264
            Q RNPHNYLADFQAELPLY+ SGALV +L+ +R +++ AS + V LP  ++ L V M+E+G+L + DV+L+QAWL D+ S+GY   ST
Sbjct:  312 QIRNPHNYLADFQAELPLYEQSGALVAFLDGHRRQSVAASEAGVGLPERIDALMVEMYEYGVLEQADVQLSQAWLEDLYSVGYNPNST 399
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BLAST of mRNA_L-digitata_M_contig99517.1.1 vs. uniprot
Match: A0A7S3BZP8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BZP8_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 4.570e-19
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 QFRNPHNYLADFQAELPLYKFSGALVDYLENYRLETIEASTSDVDLPLLVEELAVTMFEHGILGKTDVKLTQAWLMDMESIGYE 252
            Q+RN HNYLADF +ELPLY+ +GALV  L       +E S     LP  +EEL + M+E  I+G+ DVKL QAW++D+ S+GYE
Sbjct:   41 QYRNAHNYLADFNSELPLYQQAGALVKLL-------LEWSPQSHTLPGRLEELYILMYEVNIVGEADVKLLQAWILDLLSVGYE 117
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BLAST of mRNA_L-digitata_M_contig99517.1.1 vs. uniprot
Match: A0A6H5JQ39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ39_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 5.370e-18
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 QFRNPHNYLADFQAELPLYKFSGALVDYLENYRLETIEASTSDVDLPLLVEELAVTMFEHGILGKTDVKLTQAWLMDMESIGYE 252
            Q RNPH+YL DFQAELPLY+ +  LV++L  Y  E   AS S      LVE+LAVTM+E+GI+ + DV LTQAWL D+   GY+
Sbjct:  358 QIRNPHDYLGDFQAELPLYERASTLVEFLLGYADEK-GASNSGGLTWSLVEDLAVTMYEYGIVDEEDVVLTQAWLQDLRDSGYD 440
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BLAST of mRNA_L-digitata_M_contig99517.1.1 vs. uniprot
Match: A0A0M0JI26_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JI26_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 6.380e-18
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    1 QFRNPHNYLADFQAELPLYKFSGALVDYLENYRLETIEASTSDVDLPLLVEELAVTMFEHGILGKTDVKLTQAWLMDMESIGYEATSTSP 270
            Q+RN H+YLADF +ELPLY+ SG LV  L  +R        S   LP  +EEL V M+E GILG  DVKL QAWL+D+E  GY   +  P
Sbjct:  301 QYRNVHSYLADFNSELPLYQQSGELVRVLREWR-------PSAPSLPGRIEELYVLMYEMGILGHNDVKLAQAWLLDLEKAGYRFPAIVP 383
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BLAST of mRNA_L-digitata_M_contig99517.1.1 vs. uniprot
Match: D7FZB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB1_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 4.680e-17
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 QFRNPHNYLADFQAELPLYKFSGALVDYLENYRLETIEASTSDVDLPLLVEELAVTMFEHGILGKTDVKLTQAWLMDMESIGY 249
            Q  NP NYLADF+AE PLY+ SGALV++L  YR     AS     LPL +E LAV M+E+GI+   DV L QAWL D+   GY
Sbjct:  201 QVGNPRNYLADFKAEFPLYQRSGALVEFLLQYRDLVSNASA----LPLEIEALAVAMYEYGIVEDEDVALMQAWLEDLRDAGY 279
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BLAST of mRNA_L-digitata_M_contig99517.1.1 vs. uniprot
Match: D8LCM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCM9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.260e-16
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 QFRNPHNYLADFQAELPLYKFSGALVDYLENYRL---ETIEASTSDVDLPLLVEELAVTMFEHGILGKTDVKLTQAWLMDMESIGYE 252
            +   P++Y  DFQAELPLY+ SGALVD+L  YR    +   A  S       +E L+VTM+EHGI+   DV LTQAWL D+  +GY+
Sbjct:  368 ELEGPNSYRDDFQAELPLYEQSGALVDFLLQYRHAVEDEASAQASPESQASRIEALSVTMYEHGIVEGDDVALTQAWLKDLRDVGYD 454
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BLAST of mRNA_L-digitata_M_contig99517.1.1 vs. uniprot
Match: A0A7S3W8H2_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W8H2_EMIHU)

HSP 1 Score: 78.6 bits (192), Expect = 5.500e-16
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    1 QFRNPHNYLADFQAELPLYKFSGALVDYLENYRLETIEASTSDVDLPLLVEELAVTMFEHGILGKTDVKLTQAWLMDMESIGY 249
            QFRN HNYLADF +E+PLY+ +GALV  L  ++        +   LP   EEL V M+E GI+G +DV+L QAWL D++ IGY
Sbjct:   94 QFRNAHNYLADFNSEVPLYQQAGALVGALLRWQ-------PAARTLPGRFEELYVHMYELGIVGLSDVRLAQAWLADLDRIGY 169
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BLAST of mRNA_L-digitata_M_contig99517.1.1 vs. uniprot
Match: R1FQR1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FQR1_EMIHU)

HSP 1 Score: 78.6 bits (192), Expect = 4.200e-15
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    1 QFRNPHNYLADFQAELPLYKFSGALVDYLENYRLETIEASTSDVDLPLLVEELAVTMFEHGILGKTDVKLTQAWLMDMESIGY 249
            QFRN HNYLADF +E+PLY+ +GALV  L  ++        +   LP   EEL V M+E GI+G +DV+L QAWL D++ IGY
Sbjct:  297 QFRNAHNYLADFNSEVPLYQQAGALVGALLRWQ-------PAARTLPGRFEELYVHMYELGIVGLSDVRLAQAWLADLDRIGY 372
[Close]
BLAST of mRNA_L-digitata_M_contig99517.1.1 vs. uniprot
Match: A0A0H5RCI1_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RCI1_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 5.100e-15
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    1 QFRNPHNYLADFQAELPLYKFSGALVDYLENYRLETIEASTSDVDLPLLVEELAVTMFEHGILGKTDVKLTQAWLMDMESIGYE 252
            QFRNPHNYLADF +E+PLY  SGA++DYL  +     +AS S   LP  +E++++ ++E G +   DV L Q W+  ++ +GYE
Sbjct:  398 QFRNPHNYLADFDSEIPLYTRSGAMIDYLRGFD----QASDS---LPERMEQVSIGLYERGYIEIGDVYLMQFWIQALDGVGYE 474
[Close]
BLAST of mRNA_L-digitata_M_contig99517.1.1 vs. uniprot
Match: UPI0018D5FB2F (probable glycosyltransferase STELLO1 n=2 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D5FB2F)

HSP 1 Score: 71.2 bits (173), Expect = 1.810e-12
Identity = 34/84 (40.48%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 QFRNPHNYLADFQAELPLYKFSGALVDYLENYRLETIEASTSDVDLPLLVEELAVTMFEHGILGKTDVKLTQAWLMDMESIGYE 252
            Q+RNPHNY+ADF +E+ LY  +  LV +L+ +   T E S++ +   LL  +LA+ ++E    G  DV LT+AW+ D++ +GY+
Sbjct:  368 QYRNPHNYMADFDSEMDLYYKAETLVKFLQEW---TPEKSSTSLQQKLL--DLAIRLYEFDFFGVQDVTLTEAWIQDLQCLGYK 446
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99517.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLI5_ECTSI2.840e-2555.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3BZP8_9EUKA4.570e-1951.19Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A6H5JQ39_9PHAE5.370e-1854.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0M0JI26_9EUKA6.380e-1851.11Uncharacterized protein (Fragment) n=1 Tax=Chrysoc... [more]
D7FZB1_ECTSI4.680e-1754.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCM9_ECTSI2.260e-1648.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3W8H2_EMIHU5.500e-1650.60Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
R1FQR1_EMIHU4.200e-1550.60Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A0H5RCI1_9EUKA5.100e-1545.24Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
UPI0018D5FB2F1.810e-1240.48probable glycosyltransferase STELLO1 n=2 Tax=Patir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99517contigL-digitata_M_contig99517:593..865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FLI5
PFAMsSTELLO
Model size273
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0006073,GO:0006109,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009664,GO:0009832,GO:0009889,GO:0009987,GO:0010383,GO:0010556,GO:0010675,GO:0010962,GO:0010981,GO:0012505,GO:0016043,GO:0016051,GO:0019222,GO:0030243,GO:0030244,GO:0030312,GO:0031323,GO:0031326,GO:0031410,GO:0031982,GO:0031984,GO:0032881,GO:0032885,GO:0032950,GO:0032951,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0050789,GO:0050794,GO:0051128,GO:0051273,GO:0051274,GO:0052324,GO:0052541,GO:0060255,GO:0065007,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098791,GO:1901576,GO:1903338,GO:2000112,GO:2001006,GO:2001009
Exons1
Evalue4.65e-26
EggNOG OGs28KU8@1|root,2QTAG@2759|Eukaryota
Descriptionplant-type cell wall cellulose biosynthetic process
Cds size273
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408653.3807693-CDS-L-digitata_M_contig99517:592..8651682408653.3807693-CDS-L-digitata_M_contig99517:592..865Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99517 593..865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99517.1.1prot_L-digitata_M_contig99517.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99517 593..865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99517.1.1

>prot_L-digitata_M_contig99517.1.1 ID=prot_L-digitata_M_contig99517.1.1|Name=mRNA_L-digitata_M_contig99517.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=91bp
QFRNPHNYLADFQAELPLYKFSGALVDYLENYRLETIEASTSDVDLPLLV
EELAVTMFEHGILGKTDVKLTQAWLMDMESIGYEATSTSP*
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mRNA from alignment at L-digitata_M_contig99517:593..865+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99517.1.1 ID=mRNA_L-digitata_M_contig99517.1.1|Name=mRNA_L-digitata_M_contig99517.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=273bp|location=Sequence derived from alignment at L-digitata_M_contig99517:593..865+ (Laminaria digitata LdigPH10_18mv male)
CAGTTTCGGAACCCTCACAACTACCTGGCCGACTTCCAAGCGGAGCTGCC
GCTGTACAAGTTCAGCGGGGCTCTGGTTGACTATCTCGAAAACTACCGAC
TCGAGACTATCGAGGCTAGCACATCCGATGTGGACCTCCCGCTTTTGGTC
GAAGAACTTGCGGTGACTATGTTCGAGCACGGCATCCTCGGAAAGACGGA
CGTAAAGTTGACCCAGGCGTGGCTGATGGATATGGAGTCCATCGGCTATG
AGGCAACATCCACTTCTCCGTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99517:593..865+

>mRNA_L-digitata_M_contig99517.1.1 ID=mRNA_L-digitata_M_contig99517.1.1|Name=mRNA_L-digitata_M_contig99517.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=273bp|location=Sequence derived from alignment at L-digitata_M_contig99517:593..865+ (Laminaria digitata LdigPH10_18mv male)
CAGTTTCGGAACCCTCACAACTACCTGGCCGACTTCCAAGCGGAGCTGCC
GCTGTACAAGTTCAGCGGGGCTCTGGTTGACTATCTCGAAAACTACCGAC
TCGAGACTATCGAGGCTAGCACATCCGATGTGGACCTCCCGCTTTTGGTC
GAAGAACTTGCGGTGACTATGTTCGAGCACGGCATCCTCGGAAAGACGGA
CGTAAAGTTGACCCAGGCGTGGCTGATGGATATGGAGTCCATCGGCTATG
AGGCAACATCCACTTCTCCGTGA
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