mRNA_L-digitata_M_contig99255.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99255.1.1
Unique NamemRNA_L-digitata_M_contig99255.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99255.1.1 vs. uniprot
Match: A0A2D8PQ83_9PROT (3-oxoacyl-ACP reductase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PQ83_9PROT)

HSP 1 Score: 440 bits (1131), Expect = 6.380e-155
Identity = 218/256 (85.16%), Postives = 233/256 (91.02%), Query Frame = 1
Query:    1 MTRDTLSLDGRVAMITGAARGMGREHALLMAERGADVIINDLSADAAEETAEECRALGRKATVMACDNTDIERFVALIGEHEADHGRVDILVNNAGIQGNKLTIEEIDEDIWHAMTDIKMKASFFAVRALVPGMKARKYGKIVNTSSIFAMEGSFSMSHYTGAASGVLGYVKGWARELAPWNICVNAVAPGTVATELTINSMGWDVIRDFEKTVPMGRLADKKEIAYAVAWLASPETDFLTGQLISPNGGQTIVGI 768
            MTR++L LDGRVAMITGAARGMG+EHALLMAERGAD+I+NDL+ +   ETAEECRALGRK T M CDNTDI  F ALI EHE DHGRVDILV+NAGIQGNKL IE+IDEDIW AMT+IKMKA+FFA RA+VPGMK RKYGK++NTSSIFAMEGSFSMSHYTGAASGVLGYVKGWARELAPWNIC NAVAPGTVATELTINSMGW VIRDFEK VPMGRLADK+EIAYA AWLAS E DFLTGQLISPNGGQTIVGI
Sbjct:    1 MTRESLGLDGRVAMITGAARGMGKEHALLMAERGADLILNDLNGETLAETAEECRALGRKVTEMVCDNTDIPTFTALIPEHEDDHGRVDILVSNAGIQGNKLAIEDIDEDIWEAMTNIKMKATFFAARAVVPGMKKRKYGKLINTSSIFAMEGSFSMSHYTGAASGVLGYVKGWARELAPWNICANAVAPGTVATELTINSMGWGVIRDFEKQVPMGRLADKREIAYAAAWLASSEADFLTGQLISPNGGQTIVGI 256          
BLAST of mRNA_L-digitata_M_contig99255.1.1 vs. uniprot
Match: A0A520NX72_9PROT (SDR family oxidoreductase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NX72_9PROT)

HSP 1 Score: 432 bits (1112), Expect = 5.010e-152
Identity = 211/256 (82.42%), Postives = 232/256 (90.62%), Query Frame = 1
Query:    1 MTRDTLSLDGRVAMITGAARGMGREHALLMAERGADVIINDLSADAAEETAEECRALGRKATVMACDNTDIERFVALIGEHEADHGRVDILVNNAGIQGNKLTIEEIDEDIWHAMTDIKMKASFFAVRALVPGMKARKYGKIVNTSSIFAMEGSFSMSHYTGAASGVLGYVKGWARELAPWNICVNAVAPGTVATELTINSMGWDVIRDFEKTVPMGRLADKKEIAYAVAWLASPETDFLTGQLISPNGGQTIVGI 768
            MTR+TLSL GR+AMITGAARGMGREHALLMAERGAD+I+NDL A+A   TAEECR+ GR  T MACDNTDI  ++ LIGEHEA HGRVDILVNNAGIQGNK  +EEIDE+IW AMT IKMKA+FFA RA++PGMK RKYGK++N SSIFAMEGSFSMSHYTGAASGVLGY KGWARELAPWNIC NAVAPGTVAT+LTINSMGWDVI +FEK+VPMGRLADK+EIAYAVAWLASPE+DF+TGQLISP GGQTIVGI
Sbjct:    1 MTRETLSLGGRIAMITGAARGMGREHALLMAERGADLILNDLDAEALNGTAEECRSFGRTVTEMACDNTDIPNYIRLIGEHEAQHGRVDILVNNAGIQGNKYIVEEIDEEIWEAMTFIKMKATFFAARAVIPGMKKRKYGKLINVSSIFAMEGSFSMSHYTGAASGVLGYAKGWARELAPWNICANAVAPGTVATDLTINSMGWDVIDEFEKSVPMGRLADKREIAYAVAWLASPESDFVTGQLISPTGGQTIVGI 256          
BLAST of mRNA_L-digitata_M_contig99255.1.1 vs. uniprot
Match: UPI001C69D319 (SDR family oxidoreductase n=1 Tax=Hoeflea sp. WL0058 TaxID=2865987 RepID=UPI001C69D319)

HSP 1 Score: 264 bits (675), Expect = 1.400e-85
Identity = 141/255 (55.29%), Postives = 176/255 (69.02%), Query Frame = 1
Query:    1 MTRDTLSLDGRVAMITGAARGMGREHALLMAERGADVIINDLSADAAEETAEECRALGRKATVMACDNTDIERFVALIGEHEADHGRVDILVNNAGIQGNKLTIEEIDEDIWHAMTDIKMKASFFAVRALVPGMKARKYGKIVNTSSIFAMEGSFSMSHYTGAASGVLGYVKGWARELAPWNICVNAVAPGTVATELTINSMGWDVIRDFEKTVPMGRLADKKEIAYAVAWLASPETDFLTGQLISPNGGQTIVG 765
            MT+D  SL+GRVA ITG+ RGMG  HA LMAERGAD++++D+  D A+ETAE  +A+GRK  +   D  D      L+ E EA  G VDILVNNAGI G    IEEI  + +  M DI ++ SFF  +A++PGMK RKYG+IVN SSI+ M G  + SHY  A + VLG  K WA+ELAPWNI VNAV PG V TE+ I   G + IR+ EK VP+GR A  +EI+YAV + A+P  DF+TGQ ISPNGG+TIVG
Sbjct:    1 MTKDPNSLEGRVAWITGSGRGMGSAHAKLMAERGADIVVHDVLEDEAKETAEAIQAMGRKVLLSTADIRDAAAMRDLVKEVEAKLGPVDILVNNAGI-GEHAEIEEITPEKYQRMFDIHVRGSFFCGQAVIPGMKERKYGRIVNISSIWGMNGHHTASHYCAAKTAVLGLTKAWAKELAPWNILVNAVCPGGVLTEMPIRVQGMEKIREKEKKVPLGRWAAPEEISYAVVYFAAPTGDFVTGQAISPNGGETIVG 254          
BLAST of mRNA_L-digitata_M_contig99255.1.1 vs. uniprot
Match: A0A7S8C3E9_9HYPH (SDR family oxidoreductase n=1 Tax=Kaustia mangrovi TaxID=2593653 RepID=A0A7S8C3E9_9HYPH)

HSP 1 Score: 261 bits (668), Expect = 1.620e-84
Identity = 141/255 (55.29%), Postives = 172/255 (67.45%), Query Frame = 1
Query:    1 MTRDTLSLDGRVAMITGAARGMGREHALLMAERGADVIINDLSADAAEETAEECRALGRKATVMACDNTDIERFVALIGEHEADHGRVDILVNNAGIQGNKLTIEEIDEDIWHAMTDIKMKASFFAVRALVPGMKARKYGKIVNTSSIFAMEGSFSMSHYTGAASGVLGYVKGWARELAPWNICVNAVAPGTVATELTINSMGWDVIRDFEKTVPMGRLADKKEIAYAVAWLASPETDFLTGQLISPNGGQTIVG 765
            M  D + LDG+VA ITG+ RGMGR HALLMA RGAD++++D+  D A ETA+  R LGR+A V      D      L+ E     G VDILVNNAGI G    IEEIDE  +  M DI +K SFF  +A++P MK R+ GKIVN SSI+ M G  + SHY  A + +LG  K WA+ELA WNI VNAV PG V TE+ +   GWD IR+ EK VP+GR A  +EIAYAVA+LAS + DF+TGQ ISPNGG+TIVG
Sbjct:    1 MPSDPIGLDGKVAWITGSGRGMGRAHALLMARRGADIVVHDVLEDEAGETADAVRGLGRRAMVSHASVDDPRAMADLVAEIGTTLGPVDILVNNAGI-GEHAAIEEIDEARYQRMFDIHVKGSFFCGQAVIPVMKERRSGKIVNISSIWGMNGHETASHYCAAKTALLGLTKAWAKELASWNIHVNAVCPGGVVTEMPVKVQGWDKIREKEKRVPLGRWAQPEEIAYAVAFLASGQADFITGQAISPNGGETIVG 254          
BLAST of mRNA_L-digitata_M_contig99255.1.1 vs. uniprot
Match: A0A3D2BU76_9PROT (NAD(P)-dependent oxidoreductase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BU76_9PROT)

HSP 1 Score: 261 bits (667), Expect = 2.530e-84
Identity = 135/250 (54.00%), Postives = 174/250 (69.60%), Query Frame = 1
Query:   19 SLDGRVAMITGAARGMGREHALLMAERGADVIINDLSADAAEETAEECRALGRKATVMACDNTDIERFVALIGEHEADHGRVDILVNNAGIQGNKLTIEEIDEDIWHAMTDIKMKASFFAVRALVPGMKARKYGKIVNTSSIFAMEGSFSMSHYTGAASGVLGYVKGWARELAPWNICVNAVAPGTVATELTINSMGWDVIRDFEKTVPMGRLADKKEIAYAVAWLASPETDFLTGQLISPNGGQTIVGI 768
            S+D RVA++TGA  GMGR HAL++A RGA VI+ D   DAA+ETA+    +  K   +A D TD+    A I +     G +DILVNNAGI G  L IE+IDE  + AM  + MK SFFA +A+VPGMK ++YGKI+N SS FAM G+   SHY    S + G+VK WARELAPWNI VNAVAPG + T++T++S+G + I      +PMGR+    +I++AVAWLAS ETDF+TGQ++SPNGG TIVGI
Sbjct:   12 SIDSRVALVTGAGGGMGRHHALMLASRGAAVIVLDRFRDAADETAD---MIDGKTLAVAADVTDVPALQAAIADAAKQTGPIDILVNNAGIGGQGLAIEDIDEATFDAMVAVNMKGSFFATQAVVPGMKEKRYGKIINISSNFAMGGAAFASHYAACKSALSGFVKSWARELAPWNIAVNAVAPGIIETDMTLSSIGKERIDGMADEIPMGRIGTLDDISWAVAWLASEETDFMTGQVLSPNGGATIVGI 258          
BLAST of mRNA_L-digitata_M_contig99255.1.1 vs. uniprot
Match: A0A2E5V3D6_9PROT (3-oxoacyl-ACP reductase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5V3D6_9PROT)

HSP 1 Score: 261 bits (667), Expect = 2.530e-84
Identity = 133/250 (53.20%), Postives = 180/250 (72.00%), Query Frame = 1
Query:   16 LSLDGRVAMITGAARGMGREHALLMAERGADVIINDLSADAAEETAEECRALGRKATVMACDNTDIERFVALIGEHEADHGRVDILVNNAGIQGNKLTIEEIDEDIWHAMTDIKMKASFFAVRALVPGMKARKYGKIVNTSSIFAMEGSFSMSHYTGAASGVLGYVKGWARELAPWNICVNAVAPGTVATELTINSMGWDVIRDFEKTVPMGRLADKKEIAYAVAWLASPETDFLTGQLISPNGGQTIVG 765
            LSL G+ A+ITG+  GMGR HA +M++RGADVI++D+  D A+ETA+  RA G+KA+V+  D  D++ F + I   E DHG++DILVNNAG+ GNKL +EEIDE  +  M DI++KASFFA +A++ GMK RKYG ++  SSI+AM GS   SHY+ A + + G+ K WARE A   I VNAVAPG + T +T  S   ++I +  K +P+GRL   K+I+YAVAWLAS ET+ +TGQ+ISPN G+ IVG
Sbjct:    8 LSLKGKTALITGSGGGMGRSHANIMSKRGADVIVHDIKEDGAKETADMVRANGQKASVLIADVLDVKDFTSKIKAAEVDHGKIDILVNNAGVSGNKLMMEEIDEKTYDQMFDIQVKASFFATQAVLRGMKERKYGSVIMISSIYAMGGSDFASHYSAAKAALSGFTKAWAREFAAEKIRVNAVAPGFILTGMTQGSNTPEMIEERGKNMPLGRLTTPKDISYAVAWLASDETEMITGQVISPNSGEVIVG 257          
BLAST of mRNA_L-digitata_M_contig99255.1.1 vs. uniprot
Match: A0A2E6GR14_9PROT (3-oxoacyl-ACP reductase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GR14_9PROT)

HSP 1 Score: 261 bits (668), Expect = 2.910e-84
Identity = 133/250 (53.20%), Postives = 180/250 (72.00%), Query Frame = 1
Query:   16 LSLDGRVAMITGAARGMGREHALLMAERGADVIINDLSADAAEETAEECRALGRKATVMACDNTDIERFVALIGEHEADHGRVDILVNNAGIQGNKLTIEEIDEDIWHAMTDIKMKASFFAVRALVPGMKARKYGKIVNTSSIFAMEGSFSMSHYTGAASGVLGYVKGWARELAPWNICVNAVAPGTVATELTINSMGWDVIRDFEKTVPMGRLADKKEIAYAVAWLASPETDFLTGQLISPNGGQTIVG 765
            ++L+G+ A+ITGA  GMGR HA+LM+ERGADVI++D+  + A ETAE     G+KA+V+  D  D+  F A I + EADHG++DILVNNAG+ GNKL IE+IDE ++  M DI+++ SFFA +A++PGMKAR  G IV  SSI+AM GS   SHY  A + + G+ K WARE A   I VNAVAPG + T +T  S   ++I +  K +P+GRL + ++I+YAVAWLAS ET+ +TGQ+ISPN G+ IVG
Sbjct:   23 VTLEGKTALITGAGGGMGRSHAVLMSERGADVIVHDIKEEGAFETAEMVHTNGQKASVLIADVRDVPDFTAKIAKAEADHGKIDILVNNAGVSGNKLAIEDIDEAVFDQMFDIQVRGSFFATKAVLPGMKARNSGSIVIISSIYAMGGSDFASHYAAAKAALSGFTKAWAREFASHKIRVNAVAPGFILTGMTQGSNTPEMIEERGKKMPLGRLTNSQDISYAVAWLASDETEMITGQVISPNSGEVIVG 272          
BLAST of mRNA_L-digitata_M_contig99255.1.1 vs. uniprot
Match: A0A2E9EC28_9GAMM (3-oxoacyl-ACP reductase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E9EC28_9GAMM)

HSP 1 Score: 258 bits (659), Expect = 3.500e-83
Identity = 127/249 (51.00%), Postives = 176/249 (70.68%), Query Frame = 1
Query:   19 SLDGRVAMITGAARGMGREHALLMAERGADVIINDLSADAAEETAEECRALGRKATVMACDNTDIERFVALIGEHEADHGRVDILVNNAGIQGNKLTIEEIDEDIWHAMTDIKMKASFFAVRALVPGMKARKYGKIVNTSSIFAMEGSFSMSHYTGAASGVLGYVKGWARELAPWNICVNAVAPGTVATELTINSMGWDVIRDFEKTVPMGRLADKKEIAYAVAWLASPETDFLTGQLISPNGGQTIVG 765
            +L G VA++TG+ RGMGR  A L+AERGADVI++D++ D+  ET E  R+ GR+A  +  D  ++E F A I E E + G +DILVNNAG+ G KL + +I E+I++ + DI+++ SFFAV+A++PGMK+R YGKI+N SSI+AM GS   SHY  A + + G+ K WA E APW IC NAVAPG + T++T  S    ++ +  K +P+GR  +  EI+YAVAWLAS E D +TGQ+ISPN G+ IVG
Sbjct:    4 NLKGMVALVTGSGRGMGRSXAGLLAERGADVIVHDINPDSVAETLELVRSNGRRAGQIIADVRNVEEFTAKISEQELELGXIDILVNNAGVSGXKLAVXDITEEIYNNLFDIQVRGSFFAVQAVLPGMKSRXYGKIINISSIYAMGGSSFASHYAAAKAALSGFTKSWAXEFAPWKICCNAVAPGFILTDMTRGSNSDQMLENRSKAMPLGRFTEPLEISYAVAWLASXECDMVTGQVISPNSGEVIVG 252          
BLAST of mRNA_L-digitata_M_contig99255.1.1 vs. uniprot
Match: A0A2D8G4D4_9PROT (3-oxoacyl-ACP reductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G4D4_9PROT)

HSP 1 Score: 257 bits (657), Expect = 8.290e-83
Identity = 135/256 (52.73%), Postives = 169/256 (66.02%), Query Frame = 1
Query:    1 MTRDTLSLDGRVAMITGAARGMGREHALLMAERGADVIINDLSADAAEETAEECRALGRKATVMACDNTDIERFVALIGEHEADHGRVDILVNNAGIQGNKLTIEEIDEDIWHAMTDIKMKASFFAVRALVPGMKARKYGKIVNTSSIFAMEGSFSMSHYTGAASGVLGYVKGWARELAPWNICVNAVAPGTVATELTINSMGWDVIRDFEKTVPMGRLADKKEIAYAVAWLASPETDFLTGQLISPNGGQTIVGI 768
            M      L G+VA++TGA  GMGR H +++A RGA VI  DL  +A  +TA   +A+G +   +A D TDI    A I E     G +DILVNNAGI G  L IE+IDE  + AM  + MK SFFA +A+ P MK R+YGK+ N SS FAM G+   SHY    S + G+VK WARELAPWNI VNAVAPG + TE+T+NS+G + I      +PMGR+     I++AVAWLAS ETDFLTGQ++SPNGG TIVGI
Sbjct:    6 MDNSNKXLQGKVALVTGAGHGMGRNHVMMLASRGATVIALDLDREAVAKTA---KAIGGEXLAVAADVTDIPALQAAIAEAAXKXGXIDILVNNAGIGGQGLAIEDIDETTFDAMVAVNMKGSFFATQAVXPAMKERRYGKVXNISSNFAMGGAAFASHYAACKSALSGFVKSWARELAPWNIAVNAVAPGIIETEMTLNSIGKERIDGMATEIPMGRIGTLXXISWAVAWLASKETDFLTGQVLSPNGGATIVGI 258          
BLAST of mRNA_L-digitata_M_contig99255.1.1 vs. uniprot
Match: A0A2E3K7G3_9PROT (3-oxoacyl-ACP reductase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3K7G3_9PROT)

HSP 1 Score: 254 bits (650), Expect = 8.100e-82
Identity = 127/249 (51.00%), Postives = 170/249 (68.27%), Query Frame = 1
Query:   19 SLDGRVAMITGAARGMGREHALLMAERGADVIINDLSADAAEETAEECRALGRKATVMACDNTDIERFVALIGEHEADHGRVDILVNNAGIQGNKLTIEEIDEDIWHAMTDIKMKASFFAVRALVPGMKARKYGKIVNTSSIFAMEGSFSMSHYTGAASGVLGYVKGWARELAPWNICVNAVAPGTVATELTINSMGWDVIRDFEKTVPMGRLADKKEIAYAVAWLASPETDFLTGQLISPNGGQTIVG 765
            +L+  VA++TG+ RGMGR HA L+A RGADVI++D+    A ET E  RALGRKA  +  D  D++ F + I + E   G++DILVNNAGI GNKL +E+IDE ++  + D  ++ +FFA R+++PGMK R YGKI+N SSI+AM GS   SHY  A S + G  K WARE APW IC NAVAPG + T++T  S   +++    K +P+GR     EI+Y+V WLAS E D +TGQ+ISPN G+ IVG
Sbjct:    4 TLEDMVALVTGSGRGMGRTHAELLASRGADVIVHDMDKKNANETVEVVRALGRKAEAIISDVCDVKDFSSKIKQMEYKFGKIDILVNNAGIGGNKLVLEDIDELVYDRLFDTHVRGTFFATRSVIPGMKERNYGKIINISSIYAMGGSNFASHYAAAKSAISGLTKSWAREFAPWKICCNAVAPGFILTDMTRGSNTIEMLEARSKAMPLGRFTKSIEISYSVCWLASRECDMITGQVISPNSGEVIVG 252          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99255.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8PQ83_9PROT6.380e-15585.163-oxoacyl-ACP reductase n=1 Tax=Rhodospirillaceae ... [more]
A0A520NX72_9PROT5.010e-15282.42SDR family oxidoreductase n=1 Tax=Rhodospirillacea... [more]
UPI001C69D3191.400e-8555.29SDR family oxidoreductase n=1 Tax=Hoeflea sp. WL00... [more]
A0A7S8C3E9_9HYPH1.620e-8455.29SDR family oxidoreductase n=1 Tax=Kaustia mangrovi... [more]
A0A3D2BU76_9PROT2.530e-8454.00NAD(P)-dependent oxidoreductase n=2 Tax=Rhodospiri... [more]
A0A2E5V3D6_9PROT2.530e-8453.203-oxoacyl-ACP reductase n=2 Tax=Rhodospirillaceae ... [more]
A0A2E6GR14_9PROT2.910e-8453.203-oxoacyl-ACP reductase n=1 Tax=Rhodospirillaceae ... [more]
A0A2E9EC28_9GAMM3.500e-8351.003-oxoacyl-ACP reductase n=1 Tax=Gammaproteobacteri... [more]
A0A2D8G4D4_9PROT8.290e-8352.733-oxoacyl-ACP reductase n=1 Tax=Alphaproteobacteri... [more]
A0A2E3K7G3_9PROT8.100e-8251.003-oxoacyl-ACP reductase n=1 Tax=Rhodospirillaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99255contigL-digitata_M_contig99255:2..772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1089551.KE386572_gene4735
PFAMsadh_short_C2
Model size771
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00029,RC00103,RC00117,RC00154
KEGG koko:K00023,ko:K00059,ko:K07535
KEGG ReactionR01779,R01977,R04533,R04534,R04536,R04543,R04566,R04953,R04964,R05582,R07759,R07763,R10116,R10120,R11671
KEGG Pathwayko00061,ko00333,ko00362,ko00630,ko00650,ko00780,ko01040,ko01100,ko01120,ko01130,ko01200,ko01212,ko01220,map00061,map00333,map00362,map00630,map00650,map00780,map01040,map01100,map01120,map01130,map01200,map01212,map01220
KEGG ModuleM00083,M00373,M00540,M00572
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.68e-69
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1MU2T@1224|Proteobacteria,2TSDG@28211|Alphaproteobacteria
EC1.1.1.100,1.1.1.36
DescriptionShort-chain dehydrogenase reductase sdr
Cds size771
COG categoryIQ
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408650.6132708-CDS-L-digitata_M_contig99255:1..7721682408650.6132708-CDS-L-digitata_M_contig99255:1..772Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99255 2..772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99255.1.1prot_L-digitata_M_contig99255.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99255 2..772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99255.1.1

>prot_L-digitata_M_contig99255.1.1 ID=prot_L-digitata_M_contig99255.1.1|Name=mRNA_L-digitata_M_contig99255.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=257bp
MTRDTLSLDGRVAMITGAARGMGREHALLMAERGADVIINDLSADAAEET
AEECRALGRKATVMACDNTDIERFVALIGEHEADHGRVDILVNNAGIQGN
KLTIEEIDEDIWHAMTDIKMKASFFAVRALVPGMKARKYGKIVNTSSIFA
MEGSFSMSHYTGAASGVLGYVKGWARELAPWNICVNAVAPGTVATELTIN
SMGWDVIRDFEKTVPMGRLADKKEIAYAVAWLASPETDFLTGQLISPNGG
QTIVGI*
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mRNA from alignment at L-digitata_M_contig99255:2..772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99255.1.1 ID=mRNA_L-digitata_M_contig99255.1.1|Name=mRNA_L-digitata_M_contig99255.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=771bp|location=Sequence derived from alignment at L-digitata_M_contig99255:2..772+ (Laminaria digitata LdigPH10_18mv male)
ATGACACGGGATACTCTCAGCCTCGACGGTCGGGTCGCCATGATTACCGG CGCGGCGCGCGGCATGGGCCGCGAACACGCGCTGCTGATGGCCGAACGCG GCGCCGATGTCATCATCAACGACCTCAGCGCCGATGCGGCGGAAGAGACC GCCGAAGAATGCCGCGCGCTTGGCCGCAAGGCGACTGTCATGGCCTGTGA CAATACCGACATAGAGCGTTTCGTCGCCCTGATCGGTGAGCATGAAGCCG ATCATGGCCGCGTCGACATTCTGGTCAATAATGCCGGTATTCAAGGCAAC AAGCTGACCATAGAGGAAATCGACGAAGATATCTGGCACGCGATGACCGA TATCAAGATGAAAGCGTCGTTCTTCGCCGTCCGCGCCCTGGTCCCCGGTA TGAAGGCGCGGAAATACGGCAAGATCGTCAACACGTCGTCGATCTTCGCC ATGGAAGGTAGTTTTTCGATGTCGCACTACACCGGCGCGGCGTCGGGCGT TCTCGGCTACGTCAAAGGCTGGGCACGCGAACTTGCACCGTGGAATATCT GCGTCAACGCCGTCGCACCGGGTACGGTGGCGACCGAACTGACCATCAAT TCGATGGGCTGGGACGTTATCAGGGATTTTGAGAAAACAGTACCGATGGG ACGTCTCGCGGACAAAAAGGAAATCGCCTACGCTGTTGCCTGGCTGGCAT CGCCGGAAACCGATTTTCTGACCGGCCAACTGATATCGCCGAACGGTGGA CAAACCATCGTCGGAATCTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99255:2..772+

>mRNA_L-digitata_M_contig99255.1.1 ID=mRNA_L-digitata_M_contig99255.1.1|Name=mRNA_L-digitata_M_contig99255.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=771bp|location=Sequence derived from alignment at L-digitata_M_contig99255:2..772+ (Laminaria digitata LdigPH10_18mv male)
ATGACACGGGATACTCTCAGCCTCGACGGTCGGGTCGCCATGATTACCGG
CGCGGCGCGCGGCATGGGCCGCGAACACGCGCTGCTGATGGCCGAACGCG
GCGCCGATGTCATCATCAACGACCTCAGCGCCGATGCGGCGGAAGAGACC
GCCGAAGAATGCCGCGCGCTTGGCCGCAAGGCGACTGTCATGGCCTGTGA
CAATACCGACATAGAGCGTTTCGTCGCCCTGATCGGTGAGCATGAAGCCG
ATCATGGCCGCGTCGACATTCTGGTCAATAATGCCGGTATTCAAGGCAAC
AAGCTGACCATAGAGGAAATCGACGAAGATATCTGGCACGCGATGACCGA
TATCAAGATGAAAGCGTCGTTCTTCGCCGTCCGCGCCCTGGTCCCCGGTA
TGAAGGCGCGGAAATACGGCAAGATCGTCAACACGTCGTCGATCTTCGCC
ATGGAAGGTAGTTTTTCGATGTCGCACTACACCGGCGCGGCGTCGGGCGT
TCTCGGCTACGTCAAAGGCTGGGCACGCGAACTTGCACCGTGGAATATCT
GCGTCAACGCCGTCGCACCGGGTACGGTGGCGACCGAACTGACCATCAAT
TCGATGGGCTGGGACGTTATCAGGGATTTTGAGAAAACAGTACCGATGGG
ACGTCTCGCGGACAAAAAGGAAATCGCCTACGCTGTTGCCTGGCTGGCAT
CGCCGGAAACCGATTTTCTGACCGGCCAACTGATATCGCCGAACGGTGGA
CAAACCATCGTCGGAATCTGA
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