mRNA_L-digitata_M_contig99227.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99227.1.1
Unique NamemRNA_L-digitata_M_contig99227.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99227.1.1 vs. uniprot
Match: A0A6H5JUY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY2_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 5.100e-24
Identity = 58/89 (65.17%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    1 QFVKYLDAEVERLEEAGK--------------KSDRPGRAGSGDEVLNVMKIVRIRVCAQVDLMMGEDVAVLTRMLSYNDRYMMRAALR 225
            +FVKYLD EVERLE+A K              K D P   G G+EVLNV++IVR RVCAQ+DLMMGEDVAVLTRMLSY+DR+MMRAALR
Sbjct:  676 EFVKYLDGEVERLEQAEKDLAEKKRKRKVPAEKDDMP-MGGDGNEVLNVIRIVRTRVCAQLDLMMGEDVAVLTRMLSYDDRFMMRAALR 763
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BLAST of mRNA_L-digitata_M_contig99227.1.1 vs. uniprot
Match: D7FUZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ1_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.730e-23
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:    1 QFVKYLDAEVERLEEAGK--------------KSDRPGRAGSGDEVLNVMKIVRIRVCAQVDLMMGEDVAVLTRMLSYNDRYMMRAALR 225
            +FVKYLD EVERLE+  K              K D P   G G+EVLNV++IVR RVCAQ+DLMMGEDVAVLTRMLSY+DR+MMRAALR
Sbjct:  335 EFVKYLDGEVERLEKVEKDMAEKKKKRKVPAEKDDMP-MGGDGNEVLNVIRIVRTRVCAQLDLMMGEDVAVLTRMLSYDDRFMMRAALR 422
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99227.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUY2_9PHAE5.100e-2465.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUZ1_ECTSI1.730e-2364.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99227contigL-digitata_M_contig99227:162..398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FUZ1
Model size237
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.84e-24
EggNOG OGs2E654@1|root,2SCWG@2759|Eukaryota
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408650.288816-CDS-L-digitata_M_contig99227:161..3981682408650.288816-CDS-L-digitata_M_contig99227:161..398Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99227 162..398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99227.1.1prot_L-digitata_M_contig99227.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99227 162..398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99227.1.1

>prot_L-digitata_M_contig99227.1.1 ID=prot_L-digitata_M_contig99227.1.1|Name=mRNA_L-digitata_M_contig99227.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=79bp
QFVKYLDAEVERLEEAGKKSDRPGRAGSGDEVLNVMKIVRIRVCAQVDLM
MGEDVAVLTRMLSYNDRYMMRAALRAGE*
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mRNA from alignment at L-digitata_M_contig99227:162..398-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99227.1.1 ID=mRNA_L-digitata_M_contig99227.1.1|Name=mRNA_L-digitata_M_contig99227.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=237bp|location=Sequence derived from alignment at L-digitata_M_contig99227:162..398- (Laminaria digitata LdigPH10_18mv male)
CAGTTCGTCAAGTACCTGGACGCGGAGGTGGAGAGATTGGAGGAGGCGGG
AAAAAAAAGCGACAGACCGGGGAGGGCGGGGTCAGGGGACGAGGTGCTGA
ACGTGATGAAGATCGTGCGGATAAGGGTCTGCGCGCAGGTGGACCTGATG
ATGGGAGAGGATGTTGCCGTGCTGACGCGGATGCTGAGCTACAACGACCG
GTATATGATGCGAGCGGCGCTGAGGGCGGGTGAGTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99227:162..398-

>mRNA_L-digitata_M_contig99227.1.1 ID=mRNA_L-digitata_M_contig99227.1.1|Name=mRNA_L-digitata_M_contig99227.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=237bp|location=Sequence derived from alignment at L-digitata_M_contig99227:162..398- (Laminaria digitata LdigPH10_18mv male)
CAGTTCGTCAAGTACCTGGACGCGGAGGTGGAGAGATTGGAGGAGGCGGG
AAAAAAAAGCGACAGACCGGGGAGGGCGGGGTCAGGGGACGAGGTGCTGA
ACGTGATGAAGATCGTGCGGATAAGGGTCTGCGCGCAGGTGGACCTGATG
ATGGGAGAGGATGTTGCCGTGCTGACGCGGATGCTGAGCTACAACGACCG
GTATATGATGCGAGCGGCGCTGAGGGCGGGTGAGTGA
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