mRNA_L-digitata_M_contig99217.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99217.1.1
Unique NamemRNA_L-digitata_M_contig99217.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99217.1.1 vs. uniprot
Match: A0A6H5JB93_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB93_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.140e-51
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKHHGVHYHEASMWQGTKEVLSHLGSVSAEFIAEFPAM 258
            QVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCK H VHYHEASMW+GTKEVLSHL  VSAEFIAEFPAM
Sbjct:  394 QVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 479          
BLAST of mRNA_L-digitata_M_contig99217.1.1 vs. uniprot
Match: A0A812UH41_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UH41_SYMMI)

HSP 1 Score: 147 bits (370), Expect = 1.350e-41
Identity = 66/86 (76.74%), Postives = 71/86 (82.56%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKHHGVHYHEASMWQGTKEVLSHLGSVSAEFIAEFPAM 258
            QV+TTRN+TST FVDWFCGGLQYQVDHHLFP +PRHNL+K H LVESFCK  GV YHE  MW GTKEVL HL  VS EF+ EFPAM
Sbjct:  230 QVSTTRNITSTWFVDWFCGGLQYQVDHHLFPSLPRHNLKKAHELVESFCKSEGVTYHETDMWVGTKEVLMHLSKVSREFVTEFPAM 315          
BLAST of mRNA_L-digitata_M_contig99217.1.1 vs. uniprot
Match: A0A6V1P576_HETAK (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A6V1P576_HETAK)

HSP 1 Score: 143 bits (360), Expect = 7.880e-39
Identity = 65/86 (75.58%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKHHGVHYHEASMWQGTKEVLSHLGSVSAEFIAEFPAM 258
            QVTTTRN+TS  FVDWFCGGLQYQVDHHLFP IPRHNL+K H LV  FCK H V YHE +MW GTKEVLS L +VS EF  EFPAM
Sbjct:  385 QVTTTRNITSNWFVDWFCGGLQYQVDHHLFPMIPRHNLKKTHQLVTGFCKEHSVTYHETNMWVGTKEVLSFLNNVSTEFFTEFPAM 470          
BLAST of mRNA_L-digitata_M_contig99217.1.1 vs. uniprot
Match: A0A1S7C7Q7_9STRA (Delta-6 fatty acid desaturase n=2 Tax=Nannochloropsis TaxID=5748 RepID=A0A1S7C7Q7_9STRA)

HSP 1 Score: 140 bits (354), Expect = 6.210e-38
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKHHGVHYHEASMWQGTKEVLSHLGSVSAEFIAEFPAM 258
            QVTTTRNVT +  V WFCGGL YQVDHHLFP IPRH L K+H LVE FCK HGV YHE +MW+GTKEVL+HL SV+ EF+A+FPAM
Sbjct:  389 QVTTTRNVTGSWLVQWFCGGLGYQVDHHLFPMIPRHRLGKLHGLVEGFCKDHGVKYHETNMWEGTKEVLAHLSSVTKEFVADFPAM 474          
BLAST of mRNA_L-digitata_M_contig99217.1.1 vs. uniprot
Match: A0A835YIW8_9STRA (Delta-6 fatty acid desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIW8_9STRA)

HSP 1 Score: 137 bits (346), Expect = 8.730e-37
Identity = 65/86 (75.58%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKHHGVHYHEASMWQGTKEVLSHLGSVSAEFIAEFPAM 258
            QVTTTRNV+   FVDWFCGGLQYQVDHHLFP IPRHNL KVH  V +FCK +GV YHEASM  GT EVLSHL  VS +FI EFPAM
Sbjct:  387 QVTTTRNVSPNLFVDWFCGGLQYQVDHHLFPSIPRHNLPKVHAAVAAFCKENGVEYHEASMLAGTVEVLSHLKGVSTQFIGEFPAM 472          
BLAST of mRNA_L-digitata_M_contig99217.1.1 vs. uniprot
Match: A0A4D9CU91_9STRA (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CU91_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.470e-36
Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKHHGVHYHEASMWQGTKEVLSHLGSVSAEFIAEFPAM 258
            QVTTTRNVT    + WFCGGL YQVDHHLFP IPRH L ++H LVESFCK HGV YHE SMW+GT EVL+HL SV+ EF+ +FPAM
Sbjct:  390 QVTTTRNVTGGWLIQWFCGGLGYQVDHHLFPMIPRHRLGQLHGLVESFCKEHGVKYHETSMWEGTLEVLAHLASVTKEFVTDFPAM 475          
BLAST of mRNA_L-digitata_M_contig99217.1.1 vs. uniprot
Match: A0A835YVN5_9STRA (Delta-6 desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN5_9STRA)

HSP 1 Score: 135 bits (340), Expect = 6.200e-36
Identity = 64/86 (74.42%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKHHGVHYHEASMWQGTKEVLSHLGSVSAEFIAEFPAM 258
            QVTTTRNV+   FVDWFCGGLQYQVDHHLFP IPRHNL+KVH LV +FC+ +GV YHEASM  GT EVL HL  VS  FI EFPAM
Sbjct:  384 QVTTTRNVSPNLFVDWFCGGLQYQVDHHLFPSIPRHNLKKVHALVAAFCRENGVAYHEASMLAGTGEVLGHLKEVSEAFIHEFPAM 469          
BLAST of mRNA_L-digitata_M_contig99217.1.1 vs. uniprot
Match: A0A7S2STG5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STG5_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.750e-35
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKHHGVHYHEASMWQGTKEVLSHLGSVSAEFIAEFPAM 258
            QVTTTRN+T   FV W CGGL+YQVDHHLFP +PRH+L K H L+ SFCK HG+ Y+EAS W+GT +VL+HL SV+ EF+AEFPAM
Sbjct:  415 QVTTTRNITGNAFVHWLCGGLEYQVDHHLFPMMPRHSLPKAHELIVSFCKEHGIKYNEASYWKGTWDVLNHLDSVAHEFVAEFPAM 500          
BLAST of mRNA_L-digitata_M_contig99217.1.1 vs. uniprot
Match: A0A7S1Y960_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y960_9STRA)

HSP 1 Score: 123 bits (309), Expect = 7.200e-35
Identity = 60/88 (68.18%), Postives = 65/88 (73.86%), Query Frame = 1
Query:    1 QVTTTRNVTS-----TPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKHHGVHYHEASMWQGTKEVLSHLGSVSAEFIAEF 249
            QVTTTRNVT        FVDWFCGGLQYQVDHHLFP +PRH+L+K H LV SFCK  GV YHEA M  GT EVL HL SVS EF+ +F
Sbjct:   11 QVTTTRNVTGGHGIPQAFVDWFCGGLQYQVDHHLFPTLPRHSLKKAHALVASFCKEWGVKYHEADMVDGTMEVLQHLKSVSDEFVIDF 98          
BLAST of mRNA_L-digitata_M_contig99217.1.1 vs. uniprot
Match: A0A7S2XQ84_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQ84_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.110e-33
Identity = 62/95 (65.26%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 QVTTTRNVTS-----TPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKHHGVHYHEASMWQGTKEVLSHLGSVSAEFIAE----FPAM 258
            QVTTTRN+T        FVDWFCGGLQYQVDHHLFP +PRHNL+K H L+ESFCK   V YHEA +W+GT EVL HL  VS +FI E    FPAM
Sbjct:  392 QVTTTRNITGGHGIPQAFVDWFCGGLQYQVDHHLFPMMPRHNLKKTHVLIESFCKEWDVQYHEADLWEGTLEVLQHLSKVSDDFIVEMIQEFPAM 486          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99217.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB93_9PHAE3.140e-5194.19Cytochrome b5 heme-binding domain-containing prote... [more]
A0A812UH41_SYMMI1.350e-4176.74Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A6V1P576_HETAK7.880e-3975.58Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A1S7C7Q7_9STRA6.210e-3873.26Delta-6 fatty acid desaturase n=2 Tax=Nannochlorop... [more]
A0A835YIW8_9STRA8.730e-3775.58Delta-6 fatty acid desaturase n=1 Tax=Tribonema mi... [more]
A0A4D9CU91_9STRA2.470e-3670.93Cytochrome b5 heme-binding domain-containing prote... [more]
A0A835YVN5_9STRA6.200e-3674.42Delta-6 desaturase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2STG5_9STRA4.750e-3567.44Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S1Y960_9STRA7.200e-3568.18Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2XQ84_9STRA1.110e-3365.26Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99217contigL-digitata_M_contig99217:205..465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LQU3
PFAMsCyt-b5,FA_desaturase
Model size261
Max annot lvl2759|Eukaryota
KEGG koko:K21737
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.84e-52
EggNOG OGsCOG3239@1|root,KOG4232@2759|Eukaryota
EC1.14.19.38,1.14.19.47
Descriptionunsaturated fatty acid biosynthetic process
Cds size261
COG categoryI
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408650.2490501-CDS-L-digitata_M_contig99217:204..4651682408650.2490501-CDS-L-digitata_M_contig99217:204..465Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99217 205..465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99217.1.1prot_L-digitata_M_contig99217.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99217 205..465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99217.1.1

>prot_L-digitata_M_contig99217.1.1 ID=prot_L-digitata_M_contig99217.1.1|Name=mRNA_L-digitata_M_contig99217.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=87bp
QVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCK
HHGVHYHEASMWQGTKEVLSHLGSVSAEFIAEFPAM*
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mRNA from alignment at L-digitata_M_contig99217:205..465-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99217.1.1 ID=mRNA_L-digitata_M_contig99217.1.1|Name=mRNA_L-digitata_M_contig99217.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=261bp|location=Sequence derived from alignment at L-digitata_M_contig99217:205..465- (Laminaria digitata LdigPH10_18mv male)
CAGGTCACTACCACCCGAAACGTCACGAGCACGCCGTTCGTGGACTGGTT CTGCGGCGGACTCCAGTACCAGGTCGACCACCACCTCTTCCCCCAAATCC CTCGCCACAACCTCAGAAAGGTCCACACCTTGGTAGAGTCCTTCTGCAAG CATCACGGGGTGCACTACCACGAGGCCAGCATGTGGCAGGGGACAAAGGA GGTGCTCTCGCACCTCGGCAGCGTGTCTGCGGAGTTTATCGCGGAGTTCC CGGCTATGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig99217:205..465-

>mRNA_L-digitata_M_contig99217.1.1 ID=mRNA_L-digitata_M_contig99217.1.1|Name=mRNA_L-digitata_M_contig99217.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=261bp|location=Sequence derived from alignment at L-digitata_M_contig99217:205..465- (Laminaria digitata LdigPH10_18mv male)
CAGGTCACTACCACCCGAAACGTCACGAGCACGCCGTTCGTGGACTGGTT
CTGCGGCGGACTCCAGTACCAGGTCGACCACCACCTCTTCCCCCAAATCC
CTCGCCACAACCTCAGAAAGGTCCACACCTTGGTAGAGTCCTTCTGCAAG
CATCACGGGGTGCACTACCACGAGGCCAGCATGTGGCAGGGGACAAAGGA
GGTGCTCTCGCACCTCGGCAGCGTGTCTGCGGAGTTTATCGCGGAGTTCC
CGGCTATGTAG
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