mRNA_L-digitata_M_contig99209.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-digitata_M_contig99209.2.1
Unique Name	mRNA_L-digitata_M_contig99209.2.1
Type	mRNA
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))

Homology

[Close]

BLAST of mRNA_L-digitata_M_contig99209.2.1 vs. uniprot
Match: A0A3C1KSB0_9GAMM (Uncharacterized protein n=3 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KSB0_9GAMM)

HSP 1 Score: 303 bits (776), Expect = 2.920e-103
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1

Query:    1 RGNPVYSLTILIATGAITLLVGGAIGLLIGRRLSADGQRLRDTERKLDQMTQDKRAYENSVVEHFSQTARLLNTLTDSYRNVHNHLASGAETLCADKGPVSLERLQGGAEDDAEIPAHLAQIQPPLDYAPKTSPGEKGMLNEEFGIERQRKPVEER 468
            RGNPVYSLTILIATGAITLLVGGAIGLLIGRRLSADGQRLRDTERKLDQMTQDKRAYENSVVEHFSQTARLLNTLTDSYRNVHNHLASGAETLCADKGPVSLERLQGGAEDDAEIPAHLAQIQPPLDYAPKTSPGEKGMLNEEFGIERQRKPVEER
Sbjct:   57 RGNPVYSLTILIATGAITLLVGGAIGLLIGRRLSADGQRLRDTERKLDQMTQDKRAYENSVVEHFSQTARLLNTLTDSYRNVHNHLASGAETLCADKGPVSLERLQGGAEDDAEIPAHLAQIQPPLDYAPKTSPGEKGMLNEEFGIERQRKPVEER 212

[Close]

BLAST of mRNA_L-digitata_M_contig99209.2.1 vs. uniprot
Match: A0A2E7C6I7_9GAMM (Uncharacterized protein n=3 Tax=Haliea TaxID=475794 RepID=A0A2E7C6I7_9GAMM)

HSP 1 Score: 275 bits (704), Expect = 6.030e-93
Identity = 140/156 (89.74%), Postives = 145/156 (92.95%), Query Frame = 1

Query:    1 RGNPVYSLTILIATGAITLLVGGAIGLLIGRRLSADGQRLRDTERKLDQMTQDKRAYENSVVEHFSQTARLLNTLTDSYRNVHNHLASGAETLCADKGPVSLERLQGGAEDDAEIPAHLAQIQPPLDYAPKTSPGEKGMLNEEFGIERQRKPVEER 468
            RGNPVYSLTILI TGAITLLVG      +GRRLSADGQRLRDTERKLDQMTQDKRAYEN VVEHF+QTARLLNTLTDSYRNVHNHLA+GAETLC DKGPVSLERLQGGAEDDAEIPAHLAQIQPPLDYAPKTSPGEKGMLNEEFGIERQ KP ++R
Sbjct:   13 RGNPVYSLTILIVTGAITLLVGXXXXXXLGRRLSADGQRLRDTERKLDQMTQDKRAYENEVVEHFTQTARLLNTLTDSYRNVHNHLAAGAETLCQDKGPVSLERLQGGAEDDAEIPAHLAQIQPPLDYAPKTSPGEKGMLNEEFGIERQPKPAQDR 168

[Close]

BLAST of mRNA_L-digitata_M_contig99209.2.1 vs. uniprot
Match: A0A6C0U3T2_9GAMM (YhcB family protein n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U3T2_9GAMM)

HSP 1 Score: 220 bits (561), Expect = 2.460e-71
Identity = 114/145 (78.62%), Postives = 128/145 (88.28%), Query Frame = 1

Query:   16 YSLTILIATGAITLLVGGAIGLLIGRRLSADGQRLRDTERKLDQMTQDKRAYENSVVEHFSQTARLLNTLTDSYRNVHNHLASGAETLCADKGPVSLERLQGGAEDDAEIPAHLAQIQPPLDYAPKTSPGEKGMLNEEFGIERQR 450
            YSLTIL+ATGAI+LL+G   G+L+GRRLSADGQRLR++E KLDQ+TQ KRAYE  VVEHFSQTARLLN LTDSYR+VHNHLASGAETLC ++GPVSL RL+    DDAEIP HLA IQPPLDYAPKTSP EKGMLNEEFGI+R+R
Sbjct:    2 YSLTILVATGAISLLIGIGAGVLLGRRLSADGQRLRESELKLDQVTQAKRAYEEEVVEHFSQTARLLNNLTDSYRDVHNHLASGAETLCQERGPVSLGRLESRG-DDAEIPPHLAHIQPPLDYAPKTSPEEKGMLNEEFGIDRER 145

[Close]

BLAST of mRNA_L-digitata_M_contig99209.2.1 vs. uniprot
Match: A0A3C1NSF8_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A3C1NSF8_9GAMM)

HSP 1 Score: 214 bits (544), Expect = 2.260e-69
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1

Query:   16 YSLTILIATGAITLLVGGAIGLLIGRRLSADGQRLRDTERKLDQMTQDKRAYENSVVEHFSQTARLLNTLTDSYRNVHNHLASGAETLCADKGPVSLERLQGGAEDDAEIP 348
            YSLTILIATGAITLLVGGAIGLLIGRRLSADGQRLRDTERKLDQMTQDKRAYENSVVEHFSQTARLLNTLTDSYRNVHNHLASGAETLCADKGPVSLERLQGGAEDDAEIP
Sbjct:    2 YSLTILIATGAITLLVGGAIGLLIGRRLSADGQRLRDTERKLDQMTQDKRAYENSVVEHFSQTARLLNTLTDSYRNVHNHLASGAETLCADKGPVSLERLQGGAEDDAEIP 112

[Close]

BLAST of mRNA_L-digitata_M_contig99209.2.1 vs. uniprot
Match: A0A2N5Y3F6_9GAMM (Uncharacterized protein n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y3F6_9GAMM)

HSP 1 Score: 209 bits (531), Expect = 8.800e-67
Identity = 108/151 (71.52%), Postives = 123/151 (81.46%), Query Frame = 1

Query:   16 YSLTILIATGAITLLVGGAIGLLIGRRLSADGQRLRDTERKLDQMTQDKRAYENSVVEHFSQTARLLNTLTDSYRNVHNHLASGAETLCADKGPVSLERLQGGAEDDAEIPAHLAQIQPPLDYAPKTSPGEKGMLNEEFGIERQRKPVEER 468
            YSLTIL+ATG I L  G AIGLL+G+RLSA  + LR+TER+LD++ QDKRAYE  VVEHF+Q A LLN LTDSYRNVHNHLASGA  LC ++GPVSL  L+     D EIPAHLAQI+PPLDYAPKTSP EKGMLNEEFGI+RQ KP+E R
Sbjct:    2 YSLTILVATGIIALAAGSAIGLLLGKRLSASTKSLRETERELDRLKQDKRAYEEEVVEHFTQAASLLNNLTDSYRNVHNHLASGAANLCQERGPVSLAMLES-RNSDGEIPAHLAQIKPPLDYAPKTSPEEKGMLNEEFGIDRQHKPLEAR 151

[Close]

BLAST of mRNA_L-digitata_M_contig99209.2.1 vs. uniprot
Match: A0A5C9A6U0_9GAMM (DUF1043 family protein n=1 Tax=Parahaliea aestuarii TaxID=1852021 RepID=A0A5C9A6U0_9GAMM)

HSP 1 Score: 206 bits (523), Expect = 7.360e-65
Identity = 105/148 (70.95%), Postives = 125/148 (84.46%), Query Frame = 1

Query:    1 RGNPVYSLTILIATGAITLLVGGAIGLLIGRRLSADGQRLRDTERKLDQMTQDKRAYENSVVEHFSQTARLLNTLTDSYRNVHNHLASGAETLCADKGPVSLERLQGGAEDDAEIPAHLAQIQPPLDYAPKTSPGEKGMLNEEFGIER 444
            R   VYSLTI++A+  ++LLVG  +GLL GRR SA+G++ R+ ERKLDQ+ QDKRAYE+ VVEHFS+TA+LLN LTDSYR+VHNHLA+GA TLC  +GP+SLERLQ  A DDAEIP HLA IQPPLDYAPK+SP EKGMLNEEFG+ER
Sbjct:   45 RNYRVYSLTIVVASAVVSLLVGLGLGLLAGRRSSAEGKKSREVERKLDQVIQDKRAYEDEVVEHFSKTAKLLNNLTDSYRDVHNHLATGAATLCQGQGPISLERLQS-AGDDAEIPPHLANIQPPLDYAPKSSPEEKGMLNEEFGLER 191

[Close]

BLAST of mRNA_L-digitata_M_contig99209.2.1 vs. uniprot
Match: UPI00164FC8BB (DUF1043 family protein n=2 Tax=Parahaliea TaxID=1857932 RepID=UPI00164FC8BB)

HSP 1 Score: 203 bits (517), Expect = 1.270e-64
Identity = 103/143 (72.03%), Postives = 123/143 (86.01%), Query Frame = 1

Query:   16 YSLTILIATGAITLLVGGAIGLLIGRRLSADGQRLRDTERKLDQMTQDKRAYENSVVEHFSQTARLLNTLTDSYRNVHNHLASGAETLCADKGPVSLERLQGGAEDDAEIPAHLAQIQPPLDYAPKTSPGEKGMLNEEFGIER 444
            YSLTI++A+  ++LLVG  +GLL GRR SA+G++ R+ ERKLDQ+ QDKRAYE+ VVEHFS+TA+LLN LTDSYR+VHNHLA+GA TLC  +GP+SLERLQ  A DDAEIP HLA IQPPLDYAPK+SP EKGMLNEEFG+ER
Sbjct:    2 YSLTIVVASAVVSLLVGLGLGLLAGRRSSAEGKKSREVERKLDQVIQDKRAYEDEVVEHFSKTAKLLNNLTDSYRDVHNHLATGAATLCQGQGPISLERLQS-AGDDAEIPPHLANIQPPLDYAPKSSPEEKGMLNEEFGLER 143

[Close]

BLAST of mRNA_L-digitata_M_contig99209.2.1 vs. uniprot
Match: A0A5C9A895_9GAMM (DUF1043 family protein n=2 Tax=Parahaliea maris TaxID=2716870 RepID=A0A5C9A895_9GAMM)

HSP 1 Score: 203 bits (516), Expect = 1.420e-63
Identity = 103/144 (71.53%), Postives = 124/144 (86.11%), Query Frame = 1

Query:   13 VYSLTILIATGAITLLVGGAIGLLIGRRLSADGQRLRDTERKLDQMTQDKRAYENSVVEHFSQTARLLNTLTDSYRNVHNHLASGAETLCADKGPVSLERLQGGAEDDAEIPAHLAQIQPPLDYAPKTSPGEKGMLNEEFGIER 444
            VYSLTI+IA+  + LL+G  +GLL GRR SA+G++ R+ ERKLDQ+ QDKRAYE+ VVEHF++TA+LLN LTDSYR+VHNHLA+GA TLC  +GP+SLERLQ  A DDAEIP+HLA IQPPLDYAPK+SP EKGMLNEEFG+ER
Sbjct:   44 VYSLTIVIASAVVCLLIGLGLGLLAGRRSSAEGKKYREVERKLDQVIQDKRAYEDEVVEHFAKTAKLLNGLTDSYRDVHNHLATGAATLCQGQGPISLERLQS-AGDDAEIPSHLANIQPPLDYAPKSSPEEKGMLNEEFGLER 186

[Close]

BLAST of mRNA_L-digitata_M_contig99209.2.1 vs. uniprot
Match: UPI0019D3B524 (DUF1043 family protein n=2 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D3B524)

HSP 1 Score: 201 bits (510), Expect = 1.680e-63
Identity = 100/145 (68.97%), Postives = 125/145 (86.21%), Query Frame = 1

Query:   16 YSLTILIATGAITLLVGGAIGLLIGRRLSADGQRLRDTERKLDQMTQDKRAYENSVVEHFSQTARLLNTLTDSYRNVHNHLASGAETLCADKGPVSLERLQGGAEDDAEIPAHLAQIQPPLDYAPKTSPGEKGMLNEEFGIERQR 450
            YSLTI+ A+  + LL G  +GLL+GRR SA+G++ R+ ERKLDQ+ QDKRAYE+ VV+HF++TA+LLN+LTDSYR+VHNHLA+GA TLC  +GP+SLERLQ  A DDAEIP+HLA IQPPLDYAPK+SP EKGMLNEEFG++R+R
Sbjct:    2 YSLTIVAASAVVALLAGLGLGLLLGRRGSAEGKKYREVERKLDQVIQDKRAYEDEVVDHFAKTAKLLNSLTDSYRDVHNHLATGAATLCQGQGPISLERLQS-AGDDAEIPSHLANIQPPLDYAPKSSPEEKGMLNEEFGLDRER 145

[Close]

BLAST of mRNA_L-digitata_M_contig99209.2.1 vs. uniprot
Match: A0A7W2TW28_9GAMM (DUF1043 family protein n=2 Tax=Sediminihaliea albiluteola TaxID=2758564 RepID=A0A7W2TW28_9GAMM)

HSP 1 Score: 191 bits (486), Expect = 7.520e-60
Identity = 97/145 (66.90%), Postives = 120/145 (82.76%), Query Frame = 1

Query:   16 YSLTILIATGAITLLVGGAIGLLIGRRLSADGQRLRDTERKLDQMTQDKRAYENSVVEHFSQTARLLNTLTDSYRNVHNHLASGAETLCADKGPVSLERLQGGAEDDAEIPAHLAQIQPPLDYAPKTSPGEKGMLNEEFGIERQR 450
            YS+TI+  + AI       IGLL+GRR SADG++ R+ ERKLDQ+ QDKRAYE+ VVEHF +TA+LLN+LTDSYR+VHNHLA+GA TLC  +GP+S++RL+  A DDAEIPAHLA IQPPLDYAPK+SP EKGMLNEEFG+E ++
Sbjct:    2 YSITIVAISVAIXXXXXXXIGLLLGRRSSADGKKYREVERKLDQVIQDKRAYEDEVVEHFGKTAKLLNSLTDSYRDVHNHLANGAATLCQGQGPISMDRLER-AGDDAEIPAHLASIQPPLDYAPKSSPEEKGMLNEEFGLENEK 145

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig99209.2.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig99209.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A3C1KSB0_9GAMM	2.920e-103	100.00	Uncharacterized protein n=3 Tax=Halieaceae TaxID=1...	[more]
A0A2E7C6I7_9GAMM	6.030e-93	89.74	Uncharacterized protein n=3 Tax=Haliea TaxID=47579...	[more]
A0A6C0U3T2_9GAMM	2.460e-71	78.62	YhcB family protein n=1 Tax=Kineobactrum salinum T...	[more]
A0A3C1NSF8_9GAMM	2.260e-69	100.00	Uncharacterized protein (Fragment) n=1 Tax=Halieac...	[more]
A0A2N5Y3F6_9GAMM	8.800e-67	71.52	Uncharacterized protein n=1 Tax=Kineobactrum sedim...	[more]
A0A5C9A6U0_9GAMM	7.360e-65	70.95	DUF1043 family protein n=1 Tax=Parahaliea aestuari...	[more]
UPI00164FC8BB	1.270e-64	72.03	DUF1043 family protein n=2 Tax=Parahaliea TaxID=18...	[more]
A0A5C9A895_9GAMM	1.420e-63	71.53	DUF1043 family protein n=2 Tax=Parahaliea maris Ta...	[more]
UPI0019D3B524	1.680e-63	68.97	DUF1043 family protein n=2 Tax=Parahaliea mediterr...	[more]
A0A7W2TW28_9GAMM	7.520e-60	66.90	DUF1043 family protein n=2 Tax=Sediminihaliea albi...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig99209	contig	L-digitata_M_contig99209:487..957 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	1121937.AUHJ01000014_gene2623
PFAMs	DUF1043
Model size	471
Max annot lvl	1236\|Gammaproteobacteria
KEGG ko	ko:K09908
Hectar predicted targeting category	signal anchor
Exons	1
Evalue	3.21e-100
EggNOG OGs	COG3105@1\|root,COG3105@2\|Bacteria,1N25P@1224\|Proteobacteria,1SE1A@1236\|Gammaproteobacteria,468Q0@72275\|Alteromonadaceae
Description	protein conserved in bacteria
Cds size	471
COG category	S
BRITE	ko00000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682408650.1530018-CDS-L-digitata_M_contig99209:486..957	1682408650.1530018-CDS-L-digitata_M_contig99209:486..957	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig99209 487..957 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig99209.2.1	prot_L-digitata_M_contig99209.2.1	Laminaria digitata LdigPH10_18mv male	polypeptide	L-digitata_M_contig99209 487..957 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-digitata_M_contig99209:487..957-
coding sequence from alignment at L-digitata_M_contig99209:487..957-

protein sequence of mRNA_L-digitata_M_contig99209.2.1

>prot_L-digitata_M_contig99209.2.1 ID=prot_L-digitata_M_contig99209.2.1|Name=mRNA_L-digitata_M_contig99209.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=157bp
RGNPVYSLTILIATGAITLLVGGAIGLLIGRRLSADGQRLRDTERKLDQM
TQDKRAYENSVVEHFSQTARLLNTLTDSYRNVHNHLASGAETLCADKGPV
SLERLQGGAEDDAEIPAHLAQIQPPLDYAPKTSPGEKGMLNEEFGIERQR
KPVEER*

mRNA from alignment at L-digitata_M_contig99209:487..957-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-digitata_M_contig99209.2.1 ID=mRNA_L-digitata_M_contig99209.2.1|Name=mRNA_L-digitata_M_contig99209.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=471bp|location=Sequence derived from alignment at L-digitata_M_contig99209:487..957- (Laminaria digitata LdigPH10_18mv male)
AGAGGTAACCCTGTGTACAGTTTGACCATTCTGATCGCCACCGGCGCCAT
CACTCTGCTAGTGGGTGGCGCTATCGGCCTGCTTATCGGCCGCCGCCTGT
CCGCCGACGGCCAGCGGCTGCGCGACACGGAGCGCAAGCTGGACCAGATG
ACGCAGGACAAGCGCGCCTACGAAAATTCCGTTGTCGAGCACTTCTCGCA
GACAGCACGCCTGCTGAACACGTTGACTGACTCCTATCGCAATGTGCACA
ACCACCTGGCCTCCGGGGCCGAAACCCTGTGCGCAGACAAGGGTCCGGTG
TCACTGGAGCGACTGCAGGGCGGCGCTGAAGACGACGCGGAGATACCGGC
GCACCTGGCGCAAATCCAGCCGCCGCTGGATTACGCGCCGAAAACCTCTC
CCGGCGAGAAGGGCATGCTCAATGAAGAATTTGGCATAGAGCGCCAGCGC
AAGCCGGTCGAGGAGCGCTGA

Coding sequence (CDS) from alignment at L-digitata_M_contig99209:487..957-

>mRNA_L-digitata_M_contig99209.2.1 ID=mRNA_L-digitata_M_contig99209.2.1|Name=mRNA_L-digitata_M_contig99209.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=471bp|location=Sequence derived from alignment at L-digitata_M_contig99209:487..957- (Laminaria digitata LdigPH10_18mv male)
AGAGGTAACCCTGTGTACAGTTTGACCATTCTGATCGCCACCGGCGCCAT
CACTCTGCTAGTGGGTGGCGCTATCGGCCTGCTTATCGGCCGCCGCCTGT
CCGCCGACGGCCAGCGGCTGCGCGACACGGAGCGCAAGCTGGACCAGATG
ACGCAGGACAAGCGCGCCTACGAAAATTCCGTTGTCGAGCACTTCTCGCA
GACAGCACGCCTGCTGAACACGTTGACTGACTCCTATCGCAATGTGCACA
ACCACCTGGCCTCCGGGGCCGAAACCCTGTGCGCAGACAAGGGTCCGGTG
TCACTGGAGCGACTGCAGGGCGGCGCTGAAGACGACGCGGAGATACCGGC
GCACCTGGCGCAAATCCAGCCGCCGCTGGATTACGCGCCGAAAACCTCTC
CCGGCGAGAAGGGCATGCTCAATGAAGAATTTGGCATAGAGCGCCAGCGC
AAGCCGGTCGAGGAGCGCTGA