mRNA_L-digitata_M_contig99208.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99208.2.1
Unique NamemRNA_L-digitata_M_contig99208.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99208.2.1 vs. uniprot
Match: A0A2E7PHX1_9PROT (Iron-sulfur cluster carrier protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PHX1_9PROT)

HSP 1 Score: 165 bits (418), Expect = 5.980e-48
Identity = 82/101 (81.19%), Postives = 88/101 (87.13%), Query Frame = 1 
Query:    1 VNVPVLGIIENMSSFVCPKCGERTDIFGHGGARAEAERLGCDFLGEIPLDVAIRITSDSGQPITASEPDGPHAKAYRAVAEAVLAKVAKGATAAAPKIVME 303
            VNVPVLGIIENMS+F+CPKCGERTDIFGHGGARAEAERLGCDFLGEIPLDVAIR+TSDSGQPITASEPDGP A AYR VA  VLA+ +   T  AP I M+
Sbjct:  270 VNVPVLGIIENMSTFICPKCGERTDIFGHGGARAEAERLGCDFLGEIPLDVAIRVTSDSGQPITASEPDGPLAAAYRDVASTVLARTSGATTRPAPNISMD 370
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BLAST of mRNA_L-digitata_M_contig99208.2.1 vs. uniprot
Match: A0A2E7I1X9_9PROT (Iron-sulfur cluster carrier protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I1X9_9PROT)

HSP 1 Score: 162 bits (411), Expect = 6.790e-47
Identity = 77/101 (76.24%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:    1 VNVPVLGIIENMSSFVCPKCGERTDIFGHGGARAEAERLGCDFLGEIPLDVAIRITSDSGQPITASEPDGPHAKAYRAVAEAVLAKVAKGATAAAPKIVME 303
            VNVPVLGI+ENMS+F+CP CGE TDIFGHGGA+AEA RLGCDFLGEIPLDVAIR+TSD+GQPITASEP GPHA AYR VA AVLAK+++G++  AP I ++
Sbjct:  271 VNVPVLGIVENMSTFICPNCGEHTDIFGHGGAQAEAARLGCDFLGEIPLDVAIRVTSDAGQPITASEPGGPHAAAYRDVASAVLAKISEGSSRPAPSISLD 371
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BLAST of mRNA_L-digitata_M_contig99208.2.1 vs. uniprot
Match: A0A2E8XU16_9PROT (Iron-sulfur cluster carrier protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XU16_9PROT)

HSP 1 Score: 156 bits (394), Expect = 2.320e-44
Identity = 74/101 (73.27%), Postives = 88/101 (87.13%), Query Frame = 1 
Query:    1 VNVPVLGIIENMSSFVCPKCGERTDIFGHGGARAEAERLGCDFLGEIPLDVAIRITSDSGQPITASEPDGPHAKAYRAVAEAVLAKVAKGATAAAPKIVME 303
            V VPVLGI+ENMS+FVCP+CGERTDIFGHGGAR EA +L CDFLGEIPLDV+IR+TSD+GQPITASEP+GPHA+AYR +A A+L K++ G +  AP I ME
Sbjct:  271 VYVPVLGIVENMSTFVCPRCGERTDIFGHGGAREEASKLACDFLGEIPLDVSIRVTSDAGQPITASEPEGPHAEAYRQIAAALLEKMSGGQSRPAPGIAME 371
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BLAST of mRNA_L-digitata_M_contig99208.2.1 vs. uniprot
Match: A0A858RBM2_9PROT (Mrp/NBP35 family ATP-binding protein n=1 Tax=Rhodospirillaceae bacterium B3 TaxID=2728875 RepID=A0A858RBM2_9PROT)

HSP 1 Score: 141 bits (356), Expect = 9.390e-42
Identity = 71/102 (69.61%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    1 VNVPVLGIIENMSSFVCPKCGERTDIFGHGGARAEAERLGCDFLGEIPLDVAIRITSDSGQPITASEPDGPHAKAYRAVAEAVLAKVA-KGATAAAPKIVME 303
            V+VPVLGI+ENMS F CP CG RTDIF HGGARAEAE+LG DFLGE+PLD+AIR TSD G PI  S+PD PHAK YRA+A  V AKV   GA  A P+IV+E
Sbjct:    5 VDVPVLGIVENMSYFCCPNCGHRTDIFSHGGARAEAEKLGVDFLGEVPLDIAIRETSDGGAPIVMSQPDSPHAKVYRAIAAQVWAKVGGAGARRAGPRIVVE 106
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BLAST of mRNA_L-digitata_M_contig99208.2.1 vs. uniprot
Match: A0A0A0DBV7_9PROT (Uncharacterized protein (Fragment) n=2 Tax=Inquilinus limosus TaxID=171674 RepID=A0A0A0DBV7_9PROT)

HSP 1 Score: 147 bits (370), Expect = 1.500e-41
Identity = 73/101 (72.28%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:    1 VNVPVLGIIENMSSFVCPKCGERTDIFGHGGARAEAERLGCDFLGEIPLDVAIRITSDSGQPITASEPDGPHAKAYRAVAEAVLAKVAKGATAAAPKIVME 303
            V+VPVLGIIENMS F CP CG RTDIF HGGARAEAE+LGCDFLGEIPLD+AIR TSDSGQPI  S PD  HA+AYR +A  V  K+  GA  AAP+IV+E
Sbjct:  194 VDVPVLGIIENMSYFCCPNCGHRTDIFSHGGARAEAEKLGCDFLGEIPLDIAIRETSDSGQPIVVSAPDSAHAEAYRGIAARVWDKLRSGAGPAAPRIVIE 294
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BLAST of mRNA_L-digitata_M_contig99208.2.1 vs. uniprot
Match: A0A554UHQ3_9MYCO (Iron-sulfur cluster carrier protein n=5 Tax=Bacteria TaxID=2 RepID=A0A554UHQ3_9MYCO)

HSP 1 Score: 146 bits (369), Expect = 1.480e-40
Identity = 72/101 (71.29%), Postives = 80/101 (79.21%), Query Frame = 1 
Query:    1 VNVPVLGIIENMSSFVCPKCGERTDIFGHGGARAEAERLGCDFLGEIPLDVAIRITSDSGQPITASEPDGPHAKAYRAVAEAVLAKVAKGATAAAPKIVME 303
            V+VPVLGIIENMS F CP CG RTDIF HGGARAEAE+LGCDFLGEIPLD+AIR TSDSG PI  S PD PHA+AYR +A  V  K+  GA   AP+IV+E
Sbjct:  281 VDVPVLGIIENMSYFCCPNCGHRTDIFSHGGARAEAEKLGCDFLGEIPLDIAIRETSDSGHPIVVSAPDSPHAEAYRGIAARVWDKLRSGAGPTAPRIVIE 381
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BLAST of mRNA_L-digitata_M_contig99208.2.1 vs. uniprot
Match: UPI00031DE0D2 (Mrp/NBP35 family ATP-binding protein n=1 Tax=Rhodospirillum centenum TaxID=34018 RepID=UPI00031DE0D2)

HSP 1 Score: 143 bits (360), Expect = 2.120e-40
Identity = 71/102 (69.61%), Postives = 84/102 (82.35%), Query Frame = 1 
Query:    1 VNVPVLGIIENMSSFVCPKCGERTDIFGHGGARAEAERLGCDFLGEIPLDVAIRITSDSGQPITASEPDGPHAKAYRAVAEAVLAKVA-KGATAAAPKIVME 303
            V+VPVLGI+ENMS F CP CG R+DIFGHGGARAEA RLG DFLGEIPLD+AIR TSD G PI A++PDG HA+AYRA+AE V  K++ +G   AAP+IV+E
Sbjct:  161 VDVPVLGIVENMSYFCCPNCGHRSDIFGHGGARAEAGRLGVDFLGEIPLDIAIRETSDGGTPIVATDPDGAHARAYRAIAETVWQKISGEGGRRAAPRIVIE 262
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BLAST of mRNA_L-digitata_M_contig99208.2.1 vs. uniprot
Match: A0A6L8A0T8_9PROT (Mrp/NBP35 family ATP-binding protein (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6L8A0T8_9PROT)

HSP 1 Score: 136 bits (342), Expect = 1.240e-39
Identity = 69/102 (67.65%), Postives = 81/102 (79.41%), Query Frame = 1 
Query:    1 VNVPVLGIIENMSSFVCPKCGERTDIFGHGGARAEAERLGCDFLGEIPLDVAIRITSDSGQPITASEPDGPHAKAYRAVAEAVLAKVAKGATAA--APKIVM 300
            V+VPVLGI+ENMS F CP CG+R+DIF HGGAR EAERLG  FLGEIPLD+AIR TSD G+PI A+EPDGPHA AYR +A  +L ++  GA  A  APKIV+
Sbjct:    3 VDVPVLGIVENMSYFQCPHCGKRSDIFSHGGARREAERLGVPFLGEIPLDIAIRETSDGGRPIVAAEPDGPHATAYREIAVQILDRLDAGANGAKPAPKIVI 104
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BLAST of mRNA_L-digitata_M_contig99208.2.1 vs. uniprot
Match: B6INV8_RHOCS (Iron-sulfur cluster carrier protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) TaxID=414684 RepID=B6INV8_RHOCS)

HSP 1 Score: 143 bits (360), Expect = 2.940e-39
Identity = 71/102 (69.61%), Postives = 84/102 (82.35%), Query Frame = 1 
Query:    1 VNVPVLGIIENMSSFVCPKCGERTDIFGHGGARAEAERLGCDFLGEIPLDVAIRITSDSGQPITASEPDGPHAKAYRAVAEAVLAKVA-KGATAAAPKIVME 303
            V+VPVLGI+ENMS F CP CG R+DIFGHGGARAEA RLG DFLGEIPLD+AIR TSD G PI A++PDG HA+AYRA+AE V  K++ +G   AAP+IV+E
Sbjct:  276 VDVPVLGIVENMSYFCCPNCGHRSDIFGHGGARAEAGRLGVDFLGEIPLDIAIRETSDGGTPIVATDPDGAHARAYRAIAETVWQKISGEGGRRAAPRIVIE 377
[Close]
BLAST of mRNA_L-digitata_M_contig99208.2.1 vs. uniprot
Match: A0A537L2X9_9PROT (Iron-sulfur cluster carrier protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537L2X9_9PROT)

HSP 1 Score: 143 bits (360), Expect = 2.940e-39
Identity = 73/102 (71.57%), Postives = 84/102 (82.35%), Query Frame = 1 
Query:    1 VNVPVLGIIENMSSFVCPKCGERTDIFGHGGARAEAERLGCDFLGEIPLDVAIRITSDSGQPITASEPDGPHAKAYRAVAEAVLAKV-AKGATAAAPKIVME 303
            VNVPVLGIIENMS FVCPKCGER DIF HGGA  EA+RLG  FLGE+PL +AIR TSDSG+P+ A++PDGPHAKAYRA+A  V  ++  KGA  AAPKIV+E
Sbjct:  275 VNVPVLGIIENMSYFVCPKCGERHDIFAHGGAHREADRLGVPFLGEVPLHMAIRETSDSGRPVVATDPDGPHAKAYRAIAARVRDQLKGKGAGRAAPKIVIE 376
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99208.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7PHX1_9PROT5.980e-4881.19Iron-sulfur cluster carrier protein n=1 Tax=Rhodos... [more]
A0A2E7I1X9_9PROT6.790e-4776.24Iron-sulfur cluster carrier protein n=2 Tax=Alphap... [more]
A0A2E8XU16_9PROT2.320e-4473.27Iron-sulfur cluster carrier protein n=1 Tax=Alphap... [more]
A0A858RBM2_9PROT9.390e-4269.61Mrp/NBP35 family ATP-binding protein n=1 Tax=Rhodo... [more]
A0A0A0DBV7_9PROT1.500e-4172.28Uncharacterized protein (Fragment) n=2 Tax=Inquili... [more]
A0A554UHQ3_9MYCO1.480e-4071.29Iron-sulfur cluster carrier protein n=5 Tax=Bacter... [more]
UPI00031DE0D22.120e-4069.61Mrp/NBP35 family ATP-binding protein n=1 Tax=Rhodo... [more]
A0A6L8A0T8_9PROT1.240e-3967.65Mrp/NBP35 family ATP-binding protein (Fragment) n=... [more]
B6INV8_RHOCS2.940e-3969.61Iron-sulfur cluster carrier protein n=1 Tax=Rhodos... [more]
A0A537L2X9_9PROT2.940e-3971.57Iron-sulfur cluster carrier protein n=1 Tax=Alphap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99208contigL-digitata_M_contig99208:651..956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1207063.P24_08199
PFAMsFeS_assembly_P,ParA
Model size306
Max annot lvl204441|Rhodospirillales
KEGG koko:K03593
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.19e-40
EggNOG OGsCOG0489@1|root,COG0489@2|Bacteria,1MU7R@1224|Proteobacteria,2TRDM@28211|Alphaproteobacteria,2JP8N@204441|Rhodospirillales
DescriptionBinds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP
Cds size306
COG categoryD
BRITEko00000,ko03029,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408650.0938647-CDS-L-digitata_M_contig99208:650..9561682408650.0938647-CDS-L-digitata_M_contig99208:650..956Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99208 651..956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99208.2.1prot_L-digitata_M_contig99208.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99208 651..956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99208.2.1

>prot_L-digitata_M_contig99208.2.1 ID=prot_L-digitata_M_contig99208.2.1|Name=mRNA_L-digitata_M_contig99208.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=102bp
VNVPVLGIIENMSSFVCPKCGERTDIFGHGGARAEAERLGCDFLGEIPLD
VAIRITSDSGQPITASEPDGPHAKAYRAVAEAVLAKVAKGATAAAPKIVM
E*
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mRNA from alignment at L-digitata_M_contig99208:651..956-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99208.2.1 ID=mRNA_L-digitata_M_contig99208.2.1|Name=mRNA_L-digitata_M_contig99208.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=306bp|location=Sequence derived from alignment at L-digitata_M_contig99208:651..956- (Laminaria digitata LdigPH10_18mv male)
GTCAACGTTCCGGTGCTCGGCATCATTGAAAACATGAGCAGCTTCGTCTG
TCCCAAATGCGGCGAACGCACCGATATCTTCGGTCACGGCGGCGCACGGG
CAGAAGCAGAGAGGCTCGGCTGCGACTTCCTGGGTGAAATCCCGCTCGAC
GTTGCTATTCGCATCACGTCGGATTCGGGCCAGCCCATCACGGCATCCGA
ACCCGACGGACCACACGCAAAAGCCTATCGCGCCGTGGCCGAGGCCGTTC
TTGCCAAGGTTGCCAAAGGCGCAACCGCCGCAGCGCCGAAGATCGTGATG
GAGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig99208:651..956-

>mRNA_L-digitata_M_contig99208.2.1 ID=mRNA_L-digitata_M_contig99208.2.1|Name=mRNA_L-digitata_M_contig99208.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=306bp|location=Sequence derived from alignment at L-digitata_M_contig99208:651..956- (Laminaria digitata LdigPH10_18mv male)
GTCAACGTTCCGGTGCTCGGCATCATTGAAAACATGAGCAGCTTCGTCTG
TCCCAAATGCGGCGAACGCACCGATATCTTCGGTCACGGCGGCGCACGGG
CAGAAGCAGAGAGGCTCGGCTGCGACTTCCTGGGTGAAATCCCGCTCGAC
GTTGCTATTCGCATCACGTCGGATTCGGGCCAGCCCATCACGGCATCCGA
ACCCGACGGACCACACGCAAAAGCCTATCGCGCCGTGGCCGAGGCCGTTC
TTGCCAAGGTTGCCAAAGGCGCAACCGCCGCAGCGCCGAAGATCGTGATG
GAGTAG
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