mRNA_L-digitata_M_contig99196.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99196.1.1
Unique NamemRNA_L-digitata_M_contig99196.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig99196.1.1 vs. uniprot
Match: A0A2M7LFV4_9SPHN (Amidohydrolase n=3 Tax=Sphingomonadales TaxID=204457 RepID=A0A2M7LFV4_9SPHN)

HSP 1 Score: 243 bits (621), Expect = 1.750e-72
Identity = 123/136 (90.44%), Postives = 130/136 (95.59%), Query Frame = 1 
Query:    4 RRTTAPESNFVDDDNAREAKKLADAGVKVSIGAHGQQAGIGSHWELWSFVRGGMSPVEALAAGTIESARSLGMDSEIGSLEPGKLADLLVLDADPTADIRNSQKIDQVMLNGRLYDSLTKDELVTGSRKRAAYWWE 411
            RRT APES+FVDDDNAREAKKLADAGVKVSIGAHGQQAGIGSHWELWSFVRGGMSPVEALAAGTIESARSLGMDSEIGSLE GKLADLLVLDADP+ADIRNS KI++VMLNGR+YD LT +E+VTG RKRAAYWWE
Sbjct:  933 RRTKAPESSFVDDDNAREAKKLADAGVKVSIGAHGQQAGIGSHWELWSFVRGGMSPVEALAAGTIESARSLGMDSEIGSLEVGKLADLLVLDADPSADIRNSDKINRVMLNGRMYDPLTMNEVVTGDRKRAAYWWE 1068
[Close]
BLAST of mRNA_L-digitata_M_contig99196.1.1 vs. uniprot
Match: UPI00159359F1 (amidohydrolase family protein n=1 Tax=Parasphingorhabdus flavimaris TaxID=266812 RepID=UPI00159359F1)

HSP 1 Score: 243 bits (621), Expect = 1.760e-72
Identity = 121/136 (88.97%), Postives = 129/136 (94.85%), Query Frame = 1 
Query:    4 RRTTAPESNFVDDDNAREAKKLADAGVKVSIGAHGQQAGIGSHWELWSFVRGGMSPVEALAAGTIESARSLGMDSEIGSLEPGKLADLLVLDADPTADIRNSQKIDQVMLNGRLYDSLTKDELVTGSRKRAAYWWE 411
            RRTTAPESNFVDDDNAREAKKLADAGVKV+IGAHGQQAGIGSHWELWSFVRGGM PVEALAAGTIESARSLGMD++IGSLEPGKLADLLVLDADPTADIRNS KID+VMLNGR+YD LT +E+ TGSRKR  +WWE
Sbjct:  934 RRTTAPESNFVDDDNAREAKKLADAGVKVAIGAHGQQAGIGSHWELWSFVRGGMQPVEALAAGTIESARSLGMDADIGSLEPGKLADLLVLDADPTADIRNSDKIDRVMLNGRMYDPLTMNEVETGSRKRVPHWWE 1069
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BLAST of mRNA_L-digitata_M_contig99196.1.1 vs. uniprot
Match: A0A2D3R9G0_9SPHN (Amidohydrolase n=3 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A2D3R9G0_9SPHN)

HSP 1 Score: 234 bits (597), Expect = 3.820e-69
Identity = 119/136 (87.50%), Postives = 125/136 (91.91%), Query Frame = 1 
Query:    4 RRTTAPESNFVDDDNAREAKKLADAGVKVSIGAHGQQAGIGSHWELWSFVRGGMSPVEALAAGTIESARSLGMDSEIGSLEPGKLADLLVLDADPTADIRNSQKIDQVMLNGRLYDSLTKDELVTGSRKRAAYWWE 411
            RRT AP++NFVDDDNAREAKKLADAGVKV+IGAHGQQAGI SHWELWSFVRGGMSPVEALAAGTI SARSLGM +EIGSLE GKLADLLVLDADP ADIRNS KI +VMLNGRLYD LT +ELVTG RKRAAYWWE
Sbjct:  930 RRTKAPDNNFVDDDNAREAKKLADAGVKVAIGAHGQQAGIASHWELWSFVRGGMSPVEALAAGTIMSARSLGMGAEIGSLEAGKLADLLVLDADPIADIRNSDKISRVMLNGRLYDPLTMNELVTGDRKRAAYWWE 1065
[Close]
BLAST of mRNA_L-digitata_M_contig99196.1.1 vs. uniprot
Match: UPI000B0A6EF4 (amidohydrolase family protein n=2 Tax=unclassified Erythrobacter TaxID=2633097 RepID=UPI000B0A6EF4)

HSP 1 Score: 202 bits (513), Expect = 1.270e-64
Identity = 101/136 (74.26%), Postives = 115/136 (84.56%), Query Frame = 1 
Query:    4 RRTTAPESNFVDDDNAREAKKLADAGVKVSIGAHGQQAGIGSHWELWSFVRGGMSPVEALAAGTIESARSLGMDSEIGSLEPGKLADLLVLDADPTADIRNSQKIDQVMLNGRLYDSLTKDELVTGSRKRAAYWWE 411
            RR TAP+  FVDD+ AREAKKLAD GVKVSIGAHGQQAG+ +HWELWSF RGGMSPVEAL AGTIE ARSLGM+ +IGSLE GKLADLL+L ADP+ +IRNS KID+VML GRLYD+ T +E+ TGS +R  YWWE
Sbjct:    2 RRVTAPDWAFVDDEAAREAKKLADRGVKVSIGAHGQQAGVAAHWELWSFARGGMSPVEALRAGTIEPARSLGMERDIGSLEVGKLADLLLLSADPSENIRNSDKIDRVMLGGRLYDARTMNEVETGSTRRLPYWWE 137
[Close]
BLAST of mRNA_L-digitata_M_contig99196.1.1 vs. uniprot
Match: A0A6H2DNM1_9SPHN (Amidohydrolase family protein n=1 Tax=Parasphingorhabdus halotolerans TaxID=2725558 RepID=A0A6H2DNM1_9SPHN)

HSP 1 Score: 221 bits (563), Expect = 2.010e-64
Identity = 110/136 (80.88%), Postives = 121/136 (88.97%), Query Frame = 1 
Query:    4 RRTTAPESNFVDDDNAREAKKLADAGVKVSIGAHGQQAGIGSHWELWSFVRGGMSPVEALAAGTIESARSLGMDSEIGSLEPGKLADLLVLDADPTADIRNSQKIDQVMLNGRLYDSLTKDELVTGSRKRAAYWWE 411
            RRT AP+ +FVDDDNAREAKKLADAGV VSIGAHGQQAGIGSHWELWSFVRGGMSP+ AL AGTI SA+SLGMD +IGSLE GKLADLLVLDADPTADIRNS KI +VML GR+YD LT +E+VTG++KR  YWWE
Sbjct:  935 RRTKAPDEDFVDDDNAREAKKLADAGVMVSIGAHGQQAGIGSHWELWSFVRGGMSPLGALKAGTINSAKSLGMDKDIGSLEVGKLADLLVLDADPTADIRNSDKIHRVMLGGRMYDPLTMNEVVTGTKKRVPYWWE 1070
[Close]
BLAST of mRNA_L-digitata_M_contig99196.1.1 vs. uniprot
Match: A0A328BKP4_9CAUL (Amidohydrolase n=1 Tax=Phenylobacterium kunshanense TaxID=1445034 RepID=A0A328BKP4_9CAUL)

HSP 1 Score: 217 bits (553), Expect = 4.820e-63
Identity = 109/136 (80.15%), Postives = 120/136 (88.24%), Query Frame = 1 
Query:    4 RRTTAPESNFVDDDNAREAKKLADAGVKVSIGAHGQQAGIGSHWELWSFVRGGMSPVEALAAGTIESARSLGMDSEIGSLEPGKLADLLVLDADPTADIRNSQKIDQVMLNGRLYDSLTKDELVTGSRKRAAYWWE 411
            RR  APE+++VDDDNAREA KLA  GV VSIGAHGQ+ GIGSHWELWSFVRGGMSPVEALAAGTI SARSLGM  +IGSLEPGKLADL+VLDADPTADIRNS+K+ QVML GRLYD+ T +E+VTG RKRA YWWE
Sbjct:  936 RRQKAPEADYVDDDNAREAHKLAKRGVPVSIGAHGQENGIGSHWELWSFVRGGMSPVEALAAGTIVSARSLGMAHDIGSLEPGKLADLVVLDADPTADIRNSEKVSQVMLGGRLYDARTLNEVVTGDRKRAPYWWE 1071
[Close]
BLAST of mRNA_L-digitata_M_contig99196.1.1 vs. uniprot
Match: UPI000D68D36C (amidohydrolase family protein n=3 Tax=Sphingomonadaceae TaxID=41297 RepID=UPI000D68D36C)

HSP 1 Score: 217 bits (552), Expect = 6.550e-63
Identity = 106/136 (77.94%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:    4 RRTTAPESNFVDDDNAREAKKLADAGVKVSIGAHGQQAGIGSHWELWSFVRGGMSPVEALAAGTIESARSLGMDSEIGSLEPGKLADLLVLDADPTADIRNSQKIDQVMLNGRLYDSLTKDELVTGSRKRAAYWWE 411
            RRT APE +FVDDDNAREAKKLAD GV VSIGAHGQQAGI +HWELWSFVRGGMSP++AL +GTI+SA+SLGM  EIGSLE GKLADL+VLDADPT DIRNS KI +VM+NGR+YD +T +E+VTG+RKR+AYWWE
Sbjct:  934 RRTKAPEEDFVDDDNAREAKKLADKGVLVSIGAHGQQAGIATHWELWSFVRGGMSPLQALRSGTIDSAKSLGMADEIGSLEAGKLADLVVLDADPTVDIRNSDKIHRVMVNGRMYDPVTMNEVVTGARKRSAYWWE 1069
[Close]
BLAST of mRNA_L-digitata_M_contig99196.1.1 vs. uniprot
Match: A0A840YT16_9SPHN (Imidazolonepropionase-like amidohydrolase/Tol biopolymer transport system component n=3 Tax=Sphingomonas TaxID=13687 RepID=A0A840YT16_9SPHN)

HSP 1 Score: 214 bits (546), Expect = 5.050e-62
Identity = 108/136 (79.41%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:    4 RRTTAPESNFVDDDNAREAKKLADAGVKVSIGAHGQQAGIGSHWELWSFVRGGMSPVEALAAGTIESARSLGMDSEIGSLEPGKLADLLVLDADPTADIRNSQKIDQVMLNGRLYDSLTKDELVTGSRKRAAYWWE 411
            RR  APESNFVDDDNAREA KLA  GV VSIGAHGQQAGIG+HWELWSFVRGGM+PVEAL AGTI SA+SLGM  +IGSLEPGKLADL+VLDADPTADIRNS K+ QVML GRLYD+ T DE+ TG+ KR +YWWE
Sbjct:  982 RRIKAPESNFVDDDNAREAGKLAKRGVLVSIGAHGQQAGIGAHWELWSFVRGGMTPVEALRAGTIVSAQSLGMARDIGSLEPGKLADLVVLDADPTADIRNSDKVRQVMLGGRLYDARTLDEVATGTAKRGSYWWE 1117
[Close]
BLAST of mRNA_L-digitata_M_contig99196.1.1 vs. uniprot
Match: A0A6I4TGQ3_9SPHN (Amidohydrolase family protein n=1 Tax=Tsuneonella aeria TaxID=1837929 RepID=A0A6I4TGQ3_9SPHN)

HSP 1 Score: 214 bits (544), Expect = 9.800e-62
Identity = 107/136 (78.68%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:    4 RRTTAPESNFVDDDNAREAKKLADAGVKVSIGAHGQQAGIGSHWELWSFVRGGMSPVEALAAGTIESARSLGMDSEIGSLEPGKLADLLVLDADPTADIRNSQKIDQVMLNGRLYDSLTKDELVTGSRKRAAYWWE 411
            RRTTAPE  FVDD+NAREAKKLAD GVKVSIGAHGQQ GI +HWELWSFVRGGM+PVEAL AGTI SA+SLGMD +IGSLEPGKLADLLVLDADP+ DIRNS KI +VML GR+YD+ T +E+ TGS +RA YWWE
Sbjct:  981 RRTTAPEWAFVDDENAREAKKLADRGVKVSIGAHGQQPGIAAHWELWSFVRGGMTPVEALRAGTIVSAQSLGMDRDIGSLEPGKLADLLVLDADPSVDIRNSDKITRVMLGGRMYDARTMNEVETGSARRAPYWWE 1116
[Close]
BLAST of mRNA_L-digitata_M_contig99196.1.1 vs. uniprot
Match: A0A1S6FIA8_9SPHN (Amidohydrolase n=1 Tax=Sphingomonas sp. LM7 TaxID=1938607 RepID=A0A1S6FIA8_9SPHN)

HSP 1 Score: 213 bits (543), Expect = 1.300e-61
Identity = 106/136 (77.94%), Postives = 117/136 (86.03%), Query Frame = 1 
Query:    4 RRTTAPESNFVDDDNAREAKKLADAGVKVSIGAHGQQAGIGSHWELWSFVRGGMSPVEALAAGTIESARSLGMDSEIGSLEPGKLADLLVLDADPTADIRNSQKIDQVMLNGRLYDSLTKDELVTGSRKRAAYWWE 411
            RR  APE NFVDDDNAREA KLA  GV VSIGAHGQQAGIG+HWELWSFVRGGM+P+EAL AGTI SA+SLGM  +IGSLEPGKLADL+VLDADPTADIRNS K+ +VML GRLYD+ T DE+ TG+ KR AYWWE
Sbjct:  982 RRIKAPEDNFVDDDNAREANKLAKRGVLVSIGAHGQQAGIGAHWELWSFVRGGMTPLEALRAGTIVSAQSLGMARDIGSLEPGKLADLVVLDADPTADIRNSDKVSRVMLGGRLYDAATLDEVATGTAKRGAYWWE 1117
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99196.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2M7LFV4_9SPHN1.750e-7290.44Amidohydrolase n=3 Tax=Sphingomonadales TaxID=2044... [more]
UPI00159359F11.760e-7288.97amidohydrolase family protein n=1 Tax=Parasphingor... [more]
A0A2D3R9G0_9SPHN3.820e-6987.50Amidohydrolase n=3 Tax=Sphingomonadaceae TaxID=412... [more]
UPI000B0A6EF41.270e-6474.26amidohydrolase family protein n=2 Tax=unclassified... [more]
A0A6H2DNM1_9SPHN2.010e-6480.88Amidohydrolase family protein n=1 Tax=Parasphingor... [more]
A0A328BKP4_9CAUL4.820e-6380.15Amidohydrolase n=1 Tax=Phenylobacterium kunshanens... [more]
UPI000D68D36C6.550e-6377.94amidohydrolase family protein n=3 Tax=Sphingomonad... [more]
A0A840YT16_9SPHN5.050e-6279.41Imidazolonepropionase-like amidohydrolase/Tol biop... [more]
A0A6I4TGQ3_9SPHN9.800e-6278.68Amidohydrolase family protein n=1 Tax=Tsuneonella ... [more]
A0A1S6FIA8_9SPHN1.300e-6177.94Amidohydrolase n=1 Tax=Sphingomonas sp. LM7 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99196contigL-digitata_M_contig99196:2..415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog450851.PHZ_c1089
PFAMsAmidohydro_1,PD40
Model size414
Max annot lvl204458|Caulobacterales
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.92e-62
EggNOG OGsCOG0823@1|root,COG1228@1|root,COG0823@2|Bacteria,COG1228@2|Bacteria,1MX3A@1224|Proteobacteria,2TUU6@28211|Alphaproteobacteria,2KG4I@204458|Caulobacterales
DescriptionAmidohydrolase family
Cds size414
COG categoryQU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408649.7984865-CDS-L-digitata_M_contig99196:1..4151682408649.7984865-CDS-L-digitata_M_contig99196:1..415Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99196 2..415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99196.1.1prot_L-digitata_M_contig99196.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99196 2..415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99196.1.1

>prot_L-digitata_M_contig99196.1.1 ID=prot_L-digitata_M_contig99196.1.1|Name=mRNA_L-digitata_M_contig99196.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=138bp
SRRTTAPESNFVDDDNAREAKKLADAGVKVSIGAHGQQAGIGSHWELWSF
VRGGMSPVEALAAGTIESARSLGMDSEIGSLEPGKLADLLVLDADPTADI
RNSQKIDQVMLNGRLYDSLTKDELVTGSRKRAAYWWE*
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mRNA from alignment at L-digitata_M_contig99196:2..415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99196.1.1 ID=mRNA_L-digitata_M_contig99196.1.1|Name=mRNA_L-digitata_M_contig99196.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=414bp|location=Sequence derived from alignment at L-digitata_M_contig99196:2..415+ (Laminaria digitata LdigPH10_18mv male)
TCCCGTCGCACGACCGCACCGGAAAGCAATTTTGTCGATGACGACAATGC
TCGCGAAGCAAAGAAGCTGGCTGATGCTGGCGTCAAGGTCTCGATCGGCG
CGCATGGCCAGCAGGCCGGGATTGGCAGCCACTGGGAACTCTGGTCCTTT
GTCCGTGGCGGTATGAGCCCTGTGGAGGCGTTGGCTGCCGGCACAATTGA
ATCGGCTCGCTCGCTCGGCATGGACAGCGAGATCGGGTCCCTCGAACCCG
GCAAGCTCGCCGACCTGTTGGTGCTTGATGCCGATCCGACTGCCGATATC
CGCAATAGCCAGAAAATCGATCAGGTGATGCTCAATGGCCGGCTCTATGA
TTCGCTGACCAAGGACGAGCTGGTGACCGGTAGCCGGAAACGCGCTGCCT
ATTGGTGGGAATGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99196:2..415+

>mRNA_L-digitata_M_contig99196.1.1 ID=mRNA_L-digitata_M_contig99196.1.1|Name=mRNA_L-digitata_M_contig99196.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=414bp|location=Sequence derived from alignment at L-digitata_M_contig99196:2..415+ (Laminaria digitata LdigPH10_18mv male)
TCCCGTCGCACGACCGCACCGGAAAGCAATTTTGTCGATGACGACAATGC
TCGCGAAGCAAAGAAGCTGGCTGATGCTGGCGTCAAGGTCTCGATCGGCG
CGCATGGCCAGCAGGCCGGGATTGGCAGCCACTGGGAACTCTGGTCCTTT
GTCCGTGGCGGTATGAGCCCTGTGGAGGCGTTGGCTGCCGGCACAATTGA
ATCGGCTCGCTCGCTCGGCATGGACAGCGAGATCGGGTCCCTCGAACCCG
GCAAGCTCGCCGACCTGTTGGTGCTTGATGCCGATCCGACTGCCGATATC
CGCAATAGCCAGAAAATCGATCAGGTGATGCTCAATGGCCGGCTCTATGA
TTCGCTGACCAAGGACGAGCTGGTGACCGGTAGCCGGAAACGCGCTGCCT
ATTGGTGGGAATGA
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