mRNA_L-digitata_M_contig9916.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig9916.2.1
Unique NamemRNA_L-digitata_M_contig9916.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9916.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9916contigL-digitata_M_contig9916:651..981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size333
Hectar predicted targeting categorysignal peptide
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408649.431747-CDS-L-digitata_M_contig9916:650..9681682408649.431747-CDS-L-digitata_M_contig9916:650..968Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9916 651..968 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408649.4450853-UTR-L-digitata_M_contig9916:968..9811682408649.4450853-UTR-L-digitata_M_contig9916:968..981Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig9916 969..981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9916.2.1prot_L-digitata_M_contig9916.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig9916 651..968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig9916.2.1

>prot_L-digitata_M_contig9916.2.1 ID=prot_L-digitata_M_contig9916.2.1|Name=mRNA_L-digitata_M_contig9916.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=106bp
RVVCVLSPSSRYFAPSRSCKPLSRNTSTYAYALLWHLLVLRTARAVVTLT
CNATHNPTHISSAVGVPFQASGVQYERRRSVRVATRPCMLGAAWRSTKHS
KGHYS*
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mRNA from alignment at L-digitata_M_contig9916:651..981+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig9916.2.1 ID=mRNA_L-digitata_M_contig9916.2.1|Name=mRNA_L-digitata_M_contig9916.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=331bp|location=Sequence derived from alignment at L-digitata_M_contig9916:651..981+ (Laminaria digitata LdigPH10_18mv male)
CGTGTTGTCTGCGTGCTTTCACCATCCAGCCGATACTTCGCGCCATCCAG
AAGCTGCAAGCCCTTGTCCCGAAACACGAGTACGTATGCATATGCACTGC
TGTGGCATCTGTTGGTCTTACGTACTGCACGAGCAGTCGTAACTCTCACA
TGCAACGCAACACACAACCCAACGCATATTTCAAGTGCGGTTGGCGTTCC
GTTTCAAGCATCGGGGGTACAGTATGAACGTCGACGCAGTGTGCGTGTGG
CGACAAGGCCCTGCATGTTGGGCGCCGCATGGAGATCCACAAAACACAGC
AAGGGGCACTATTCATAGTACAGTACTCTAC
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Coding sequence (CDS) from alignment at L-digitata_M_contig9916:651..981+

>mRNA_L-digitata_M_contig9916.2.1 ID=mRNA_L-digitata_M_contig9916.2.1|Name=mRNA_L-digitata_M_contig9916.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=318bp|location=Sequence derived from alignment at L-digitata_M_contig9916:651..981+ (Laminaria digitata LdigPH10_18mv male)
CGTGTTGTCTGCGTGCTTTCACCATCCAGCCGATACTTCGCGCCATCCAG
AAGCTGCAAGCCCTTGTCCCGAAACACGAGTACGTATGCATATGCACTGC
TGTGGCATCTGTTGGTCTTACGTACTGCACGAGCAGTCGTAACTCTCACA
TGCAACGCAACACACAACCCAACGCATATTTCAAGTGCGGTTGGCGTTCC
GTTTCAAGCATCGGGGGTACAGTATGAACGTCGACGCAGTGTGCGTGTGG
CGACAAGGCCCTGCATGTTGGGCGCCGCATGGAGATCCACAAAACACAGC
AAGGGGCACTATTCATAG
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