mRNA_L-digitata_M_contig99128.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99128.1.1
Unique NamemRNA_L-digitata_M_contig99128.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A0A850BGX7_9DELT (Uncharacterized protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A850BGX7_9DELT)

HSP 1 Score: 77.0 bits (188), Expect = 2.660e-13
Identity = 61/182 (33.52%), Postives = 84/182 (46.15%), Query Frame = 1
Query:   19 ALGQPNDAQAQTLTLNARTIYHAYQIPL-WPGRDAGNRNLNRFYQTLDVGGWSLG---PTGQID--AVVSMRYDTDFGTGFRVDTPAQAGIPATDGRNDV--------DLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKLSLT-PWRSGRSSVDVQLYAGLPVRFDVVFSSEPF 519
            ALG P  A A    +NA T   AY++   W       R   RF QTL +G ++L      G+ D   V+ +R D DFG    V   A+      +G   +        DLMYAYV+ RN+  G +  R GRQ + D L W+S DG  + +T P+      V  ++Y GL  R  +  SS  F
Sbjct:    4 ALGSPESALAADFVVNADTAAQAYEVTNPWGDTVLARR---RFMQTLALGVYNLQGKYTPGEADYSMVLRLRLDADFGINSHVGRSAETNFNDANGSRFIPGLQEAPLDLMYAYVEGRNVANGWIGFRAGRQYVSDVLGWWSFDGGLVRVTTPYY-----VQAEVYGGLEQRGGLALSSSRF 177          
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A0A4U1HD40_9DELT (Uncharacterized protein n=1 Tax=Polyangium aurulentum TaxID=2567896 RepID=A0A4U1HD40_9DELT)

HSP 1 Score: 71.2 bits (173), Expect = 2.700e-11
Identity = 61/182 (33.52%), Postives = 81/182 (44.51%), Query Frame = 1
Query:   31 PNDAQAQTLTLNARTIYHAYQIPLWPGRDAGNRNLNRFYQTLDVGGWSLG---PTGQID--AVVSMRYDTDFGTGFRV-----------DTPAQAGIPATDGRND--VDLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKLSLT-PWRSGRSSVDVQLYAGLPVRFDVVFSSEPF 519
            P +A+A    + + T   AYQ+    G    +R   R  QTL +G ++L      GQ D   V+ MR D DFG    +            T A  G+    G     VDLMYAYV+ RN+  G L  R GRQ + D L W+S DG    +T PW      V  + Y GL  R  +  S+  F
Sbjct:   16 PREARALDFEVQSDTAAQAYQVASPWGDVVLDRR--RLLQTLSLGVYNLQGDYKPGQADYQVVLRMRLDADFGINAHLGNADRGGETSYQTEAGPGVRYVPGLQQAPVDLMYAYVEGRNLFNGWLGFRAGRQYVSDVLGWWSFDGALARVTTPWY-----VQAEFYGGLEQRGGLPLSTSRF 190          
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A0A4V5PML5_9DELT (Uncharacterized protein n=4 Tax=Polyangium TaxID=55 RepID=A0A4V5PML5_9DELT)

HSP 1 Score: 70.1 bits (170), Expect = 6.740e-11
Identity = 60/182 (32.97%), Postives = 84/182 (46.15%), Query Frame = 1
Query:   31 PNDAQAQTLTLNARTIYHAYQIPLWPGRDAGNRNLNRFYQTLDVGGWSLGPT---GQID--AVVSMRYDTDFGTGFRVD-----------TPAQAGIPATDGRND--VDLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKLSLT-PWRSGRSSVDVQLYAGLPVRFDVVFSSEPF 519
            P DA+A    + + T   AYQ+    G    +R   R  QTL +G ++L      G+ D   V+ +R D DFG    +            T A  G+    G     VDLMYAYV+ RN++ G L  R GRQ +VD L W+S DG    +T P+      V  +LY GL  R  +  S+  +
Sbjct:    5 PRDARALDFEVQSDTAAQAYQVASPWGDTILDRR--RLMQTLSLGVYNLQGDHVPGRADFAVVLRVRLDADFGINGHLGDADRGGETSYLTEAGPGVRFVPGLQQAPVDLMYAYVEGRNLLNGWLGFRAGRQYVVDSLGWWSFDGALARVTTPY-----FVQAELYGGLEQRGGLPLSTSRY 179          
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A0A150RY08_SORCE (Uncharacterized protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150RY08_SORCE)

HSP 1 Score: 69.7 bits (169), Expect = 9.370e-11
Identity = 58/184 (31.52%), Postives = 85/184 (46.20%), Query Frame = 1
Query:   31 PNDAQAQTLTLNARTIYHAYQIPL-WPGRDAGNRNLNR--FYQTLDVGGWSL---GPTGQID--AVVSMRYDTDFGTGFRVDTPAQAG------------IPATDGRNDVDLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKLSLT-PWRSGRSSVDVQLYAGLPVRFDVVFSSEPF 519
            P  A A    + + T + AY++   W     GN N+ R    QTL +  ++L      GQ D  A + +R D DFG    ++   QAG            IP       +DLMYAYV+ RN+  G L  R+GRQ + D L W+S DG  + +T P+      V ++ Y GL  R  +  S+  +
Sbjct:   48 PRGAAAADFEVESTTGFQAYEVASPW-----GNTNIERRRLLQTLGLAVYNLQGDSAPGQADYSATLRLRLDADFGLNGHLEGAQQAGETDFSVAGGSRFIPGLH-EAPLDLMYAYVEGRNVASGWLGFRVGRQYVSDVLGWWSFDGALVRVTTPYY-----VQIEAYGGLEQRGGLPLSTSRY 220          
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A9GEV9_SORC5 (Uncharacterized protein n=2 Tax=Sorangium cellulosum TaxID=56 RepID=A9GEV9_SORC5)

HSP 1 Score: 65.1 bits (157), Expect = 3.720e-9
Identity = 57/177 (32.20%), Postives = 82/177 (46.33%), Query Frame = 1
Query:   40 AQAQTLTLNARTIYHAYQIPLWPGRDAGNRNLNRFYQTLDVGGWSL---GPTGQID--AVVSMRYDTDFGTGFRVDTPAQAGIP--ATDGRN---------DVDLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKLSLT-PWRSGRSSVDVQLYAGLPVRFDVVFSSEPF 519
            A A    + + T   AY++   P  D  N    R  QTL +  ++L      G+ D  A V +R D DFG    +D   + G    + DG +          +DLMYAYV+ RN+  G L  R+GRQ + D L W+S DG  + LT P+      V ++ Y GL  R  +  S+  F
Sbjct:   54 AAAADFEVESTTGVQAYEVA-GPWGDT-NIERRRLLQTLGLAVYNLQGDSAPGEADYSATVRLRLDADFGMNGHLDGAQRGGETDYSIDGGSRYIPGLREAPLDLMYAYVEGRNVASGWLGFRVGRQYVSDVLGWWSFDGALVRLTTPYY-----VQLEAYGGLEQRGGLPLSTSRF 223          
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A0A017TFL5_9DELT (Uncharacterized protein n=2 Tax=Chondromyces apiculatus TaxID=51 RepID=A0A017TFL5_9DELT)

HSP 1 Score: 64.3 bits (155), Expect = 6.780e-9
Identity = 53/178 (29.78%), Postives = 79/178 (44.38%), Query Frame = 1
Query:   40 AQAQTLTLNARTIYHAYQIPL-WPGRDAGNRNLNRFYQTLDVGGWSLGPTGQIDAV-----VSMRYDTDFGTGFRV---DTPAQAGIPATDGRNDV--------DLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKLSLT-PWRSGRSSVDVQLYAGLPVRFDVVFSSEPF 519
            AQA  + L++ T   AY++   W G     R L    QTL +G + L      D       + +R D DFG    +   D  A+     + G   +        DLMY Y++ RN+  G L  R+GRQ + D L W+S DG  + LT P+      V  ++Y GL  R  +  S+  +
Sbjct:   27 AQAVEMELHSTTAAQAYEVASPWGGALLDRRRL---LQTLSLGLYHLQGERAADGADYSLAMMLRLDADFGVNAHLVGGDAGAETDYARSSGSRFIPGYQVAPLDLMYGYIEGRNLAGGWLGFRLGRQYITDALGWWSFDGALVRLTTPY-----FVQAEVYGGLEQRGGLPLSTSRY 196          
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A0A7C5J2Q8_9DELT (Uncharacterized protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7C5J2Q8_9DELT)

HSP 1 Score: 58.9 bits (141), Expect = 4.950e-7
Identity = 55/176 (31.25%), Postives = 76/176 (43.18%), Query Frame = 1
Query:   34 NDAQAQTLTLNARTIYHAYQIPL-WPGRDAGNRNLNRFYQTLDVGGWSL-GPTGQIDAV----VSMRYDTDFGTG---FRVDTPAQA----GIPATDGRNDVDLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKLSLT-PWRSGRSSVDVQLYAGLPVRFDVVFSSEPF 519
            + AQA    +        Y +   W     G R L   Y TL +  ++L G     D V    V MR D DFG     +  D   Q     G+P       VD+MY YV+ +NI  G    R+GRQ + D L W+S DG  +SLT P+      +  ++Y GL  R  +  S+  F
Sbjct:   20 STAQAVDFEVTGDVAAQGYDVVSPWGDVVLGRRRL---YATLGLAAYNLQGDAKPFDPVYNLVVRMRVDPDFGVDSAEYNFDQANQIRYVPGLPLVP----VDMMYGYVEGKNIADGWFGFRVGRQYVTDVLGWWSFDGGMVSLTTPFY-----LKAEVYGGLEQRGGLPLSTSRF 183          
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A0A1V5WYF9_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium ADurb.Bin207 TaxID=1852869 RepID=A0A1V5WYF9_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 2.990e-6
Identity = 47/139 (33.81%), Postives = 65/139 (46.76%), Query Frame = 1
Query:   40 AQAQTLTLNARTIYHAYQIPLWPGRDAGNRNLNRFYQTLDVGGWSLGPTGQIDAV--------VSMRYDTDFGT----GFRVDTPAQAGIPATDGRNDVDLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKL 420
            AQA  + +++ T    YQ+    G    +R   RF QTL +    +G      A         + MR D DF          D P+ A +P    R  VDL+  Y D RN+  G L AR+GRQ++VD L W+S+DG  L
Sbjct:   26 AQAFEVEVDSETTAQGYQLRNAWGDPVLSRR--RFLQTLGLHVVGIGENENAAASSGLDMSFHMRMRLDADFAIQPFESNYADYPS-AFVPGLQ-RAPVDLVIGYFDIRNLAGGWLSARLGRQIIVDPLGWWSLDGALL 160          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A850BGX7_9DELT2.660e-1333.52Uncharacterized protein n=1 Tax=Polyangiaceae bact... [more]
A0A4U1HD40_9DELT2.700e-1133.52Uncharacterized protein n=1 Tax=Polyangium aurulen... [more]
A0A4V5PML5_9DELT6.740e-1132.97Uncharacterized protein n=4 Tax=Polyangium TaxID=5... [more]
A0A150RY08_SORCE9.370e-1131.52Uncharacterized protein n=1 Tax=Sorangium cellulos... [more]
A9GEV9_SORC53.720e-932.20Uncharacterized protein n=2 Tax=Sorangium cellulos... [more]
A0A017TFL5_9DELT6.780e-929.78Uncharacterized protein n=2 Tax=Chondromyces apicu... [more]
A0A7C5J2Q8_9DELT4.950e-731.25Uncharacterized protein n=1 Tax=Polyangiaceae bact... [more]
A0A1V5WYF9_9DELT2.990e-633.81Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99128contigL-digitata_M_contig99128:11..529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1254432.SCE1572_17715
Model size519
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.39e-10
EggNOG OGs2AIWV@1|root,319EH@2|Bacteria,1Q2HT@1224|Proteobacteria,433TN@68525|delta/epsilon subdivisions,2X3EP@28221|Deltaproteobacteria,2YVQT@29|Myxococcales
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408648.9131255-CDS-L-digitata_M_contig99128:10..5291682408648.9131255-CDS-L-digitata_M_contig99128:10..529Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99128 11..529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99128.1.1prot_L-digitata_M_contig99128.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99128 11..529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99128.1.1

>prot_L-digitata_M_contig99128.1.1 ID=prot_L-digitata_M_contig99128.1.1|Name=mRNA_L-digitata_M_contig99128.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=173bp
LVVALAALGQPNDAQAQTLTLNARTIYHAYQIPLWPGRDAGNRNLNRFYQ
TLDVGGWSLGPTGQIDAVVSMRYDTDFGTGFRVDTPAQAGIPATDGRNDV
DLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKLSLTPWRSGRS
SVDVQLYAGLPVRFDVVFSSEPF
back to top

mRNA from alignment at L-digitata_M_contig99128:11..529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99128.1.1 ID=mRNA_L-digitata_M_contig99128.1.1|Name=mRNA_L-digitata_M_contig99128.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=519bp|location=Sequence derived from alignment at L-digitata_M_contig99128:11..529- (Laminaria digitata LdigPH10_18mv male)
TTGGTCGTGGCTCTAGCCGCGCTGGGCCAACCCAACGACGCCCAGGCGCA GACGCTCACGCTCAACGCGCGCACCATCTACCACGCCTACCAAATCCCCC TGTGGCCAGGCCGGGACGCAGGCAATCGCAACCTAAATCGCTTCTACCAA ACCCTCGATGTCGGCGGCTGGTCACTCGGACCCACCGGCCAGATCGATGC CGTGGTCTCGATGCGCTACGACACAGACTTTGGCACCGGGTTTCGGGTCG ATACGCCCGCGCAGGCCGGCATTCCGGCCACAGATGGCCGCAATGACGTC GACCTGATGTACGCCTACGTAGACTGGCGCAACATTGTGAAAGGTCGCTT GCACGCCCGCATCGGCCGTCAGGTGCTGGTGGATGACCTGGCCTGGTACA GCATCGACGGTATCAAGCTGAGCCTGACCCCATGGCGCTCGGGCCGAAGC TCCGTGGACGTGCAGCTCTACGCCGGCTTGCCCGTGCGCTTCGACGTGGT CTTTTCATCAGAGCCCTTC
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig99128:11..529-

>mRNA_L-digitata_M_contig99128.1.1 ID=mRNA_L-digitata_M_contig99128.1.1|Name=mRNA_L-digitata_M_contig99128.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=519bp|location=Sequence derived from alignment at L-digitata_M_contig99128:11..529- (Laminaria digitata LdigPH10_18mv male)
TTGGTCGTGGCTCTAGCCGCGCTGGGCCAACCCAACGACGCCCAGGCGCA
GACGCTCACGCTCAACGCGCGCACCATCTACCACGCCTACCAAATCCCCC
TGTGGCCAGGCCGGGACGCAGGCAATCGCAACCTAAATCGCTTCTACCAA
ACCCTCGATGTCGGCGGCTGGTCACTCGGACCCACCGGCCAGATCGATGC
CGTGGTCTCGATGCGCTACGACACAGACTTTGGCACCGGGTTTCGGGTCG
ATACGCCCGCGCAGGCCGGCATTCCGGCCACAGATGGCCGCAATGACGTC
GACCTGATGTACGCCTACGTAGACTGGCGCAACATTGTGAAAGGTCGCTT
GCACGCCCGCATCGGCCGTCAGGTGCTGGTGGATGACCTGGCCTGGTACA
GCATCGACGGTATCAAGCTGAGCCTGACCCCATGGCGCTCGGGCCGAAGC
TCCGTGGACGTGCAGCTCTACGCCGGCTTGCCCGTGCGCTTCGACGTGGT
CTTTTCATCAGAGCCCTTC
back to top