mRNA_L-digitata_M_contig99128.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A0A850BGX7_9DELT (Uncharacterized protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A850BGX7_9DELT) HSP 1 Score: 77.0 bits (188), Expect = 2.660e-13 Identity = 61/182 (33.52%), Postives = 84/182 (46.15%), Query Frame = 1
Query: 19 ALGQPNDAQAQTLTLNARTIYHAYQIPL-WPGRDAGNRNLNRFYQTLDVGGWSLG---PTGQID--AVVSMRYDTDFGTGFRVDTPAQAGIPATDGRNDV--------DLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKLSLT-PWRSGRSSVDVQLYAGLPVRFDVVFSSEPF 519
ALG P A A +NA T AY++ W R RF QTL +G ++L G+ D V+ +R D DFG V A+ +G + DLMYAYV+ RN+ G + R GRQ + D L W+S DG + +T P+ V ++Y GL R + SS F
Sbjct: 4 ALGSPESALAADFVVNADTAAQAYEVTNPWGDTVLARR---RFMQTLALGVYNLQGKYTPGEADYSMVLRLRLDADFGINSHVGRSAETNFNDANGSRFIPGLQEAPLDLMYAYVEGRNVANGWIGFRAGRQYVSDVLGWWSFDGGLVRVTTPYY-----VQAEVYGGLEQRGGLALSSSRF 177
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A0A4U1HD40_9DELT (Uncharacterized protein n=1 Tax=Polyangium aurulentum TaxID=2567896 RepID=A0A4U1HD40_9DELT) HSP 1 Score: 71.2 bits (173), Expect = 2.700e-11 Identity = 61/182 (33.52%), Postives = 81/182 (44.51%), Query Frame = 1
Query: 31 PNDAQAQTLTLNARTIYHAYQIPLWPGRDAGNRNLNRFYQTLDVGGWSLG---PTGQID--AVVSMRYDTDFGTGFRV-----------DTPAQAGIPATDGRND--VDLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKLSLT-PWRSGRSSVDVQLYAGLPVRFDVVFSSEPF 519
P +A+A + + T AYQ+ G +R R QTL +G ++L GQ D V+ MR D DFG + T A G+ G VDLMYAYV+ RN+ G L R GRQ + D L W+S DG +T PW V + Y GL R + S+ F
Sbjct: 16 PREARALDFEVQSDTAAQAYQVASPWGDVVLDRR--RLLQTLSLGVYNLQGDYKPGQADYQVVLRMRLDADFGINAHLGNADRGGETSYQTEAGPGVRYVPGLQQAPVDLMYAYVEGRNLFNGWLGFRAGRQYVSDVLGWWSFDGALARVTTPWY-----VQAEFYGGLEQRGGLPLSTSRF 190
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A0A4V5PML5_9DELT (Uncharacterized protein n=4 Tax=Polyangium TaxID=55 RepID=A0A4V5PML5_9DELT) HSP 1 Score: 70.1 bits (170), Expect = 6.740e-11 Identity = 60/182 (32.97%), Postives = 84/182 (46.15%), Query Frame = 1
Query: 31 PNDAQAQTLTLNARTIYHAYQIPLWPGRDAGNRNLNRFYQTLDVGGWSLGPT---GQID--AVVSMRYDTDFGTGFRVD-----------TPAQAGIPATDGRND--VDLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKLSLT-PWRSGRSSVDVQLYAGLPVRFDVVFSSEPF 519
P DA+A + + T AYQ+ G +R R QTL +G ++L G+ D V+ +R D DFG + T A G+ G VDLMYAYV+ RN++ G L R GRQ +VD L W+S DG +T P+ V +LY GL R + S+ +
Sbjct: 5 PRDARALDFEVQSDTAAQAYQVASPWGDTILDRR--RLMQTLSLGVYNLQGDHVPGRADFAVVLRVRLDADFGINGHLGDADRGGETSYLTEAGPGVRFVPGLQQAPVDLMYAYVEGRNLLNGWLGFRAGRQYVVDSLGWWSFDGALARVTTPY-----FVQAELYGGLEQRGGLPLSTSRY 179
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A0A150RY08_SORCE (Uncharacterized protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150RY08_SORCE) HSP 1 Score: 69.7 bits (169), Expect = 9.370e-11 Identity = 58/184 (31.52%), Postives = 85/184 (46.20%), Query Frame = 1
Query: 31 PNDAQAQTLTLNARTIYHAYQIPL-WPGRDAGNRNLNR--FYQTLDVGGWSL---GPTGQID--AVVSMRYDTDFGTGFRVDTPAQAG------------IPATDGRNDVDLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKLSLT-PWRSGRSSVDVQLYAGLPVRFDVVFSSEPF 519
P A A + + T + AY++ W GN N+ R QTL + ++L GQ D A + +R D DFG ++ QAG IP +DLMYAYV+ RN+ G L R+GRQ + D L W+S DG + +T P+ V ++ Y GL R + S+ +
Sbjct: 48 PRGAAAADFEVESTTGFQAYEVASPW-----GNTNIERRRLLQTLGLAVYNLQGDSAPGQADYSATLRLRLDADFGLNGHLEGAQQAGETDFSVAGGSRFIPGLH-EAPLDLMYAYVEGRNVASGWLGFRVGRQYVSDVLGWWSFDGALVRVTTPYY-----VQIEAYGGLEQRGGLPLSTSRY 220
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A9GEV9_SORC5 (Uncharacterized protein n=2 Tax=Sorangium cellulosum TaxID=56 RepID=A9GEV9_SORC5) HSP 1 Score: 65.1 bits (157), Expect = 3.720e-9 Identity = 57/177 (32.20%), Postives = 82/177 (46.33%), Query Frame = 1
Query: 40 AQAQTLTLNARTIYHAYQIPLWPGRDAGNRNLNRFYQTLDVGGWSL---GPTGQID--AVVSMRYDTDFGTGFRVDTPAQAGIP--ATDGRN---------DVDLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKLSLT-PWRSGRSSVDVQLYAGLPVRFDVVFSSEPF 519
A A + + T AY++ P D N R QTL + ++L G+ D A V +R D DFG +D + G + DG + +DLMYAYV+ RN+ G L R+GRQ + D L W+S DG + LT P+ V ++ Y GL R + S+ F
Sbjct: 54 AAAADFEVESTTGVQAYEVA-GPWGDT-NIERRRLLQTLGLAVYNLQGDSAPGEADYSATVRLRLDADFGMNGHLDGAQRGGETDYSIDGGSRYIPGLREAPLDLMYAYVEGRNVASGWLGFRVGRQYVSDVLGWWSFDGALVRLTTPYY-----VQLEAYGGLEQRGGLPLSTSRF 223
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A0A017TFL5_9DELT (Uncharacterized protein n=2 Tax=Chondromyces apiculatus TaxID=51 RepID=A0A017TFL5_9DELT) HSP 1 Score: 64.3 bits (155), Expect = 6.780e-9 Identity = 53/178 (29.78%), Postives = 79/178 (44.38%), Query Frame = 1
Query: 40 AQAQTLTLNARTIYHAYQIPL-WPGRDAGNRNLNRFYQTLDVGGWSLGPTGQIDAV-----VSMRYDTDFGTGFRV---DTPAQAGIPATDGRNDV--------DLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKLSLT-PWRSGRSSVDVQLYAGLPVRFDVVFSSEPF 519
AQA + L++ T AY++ W G R L QTL +G + L D + +R D DFG + D A+ + G + DLMY Y++ RN+ G L R+GRQ + D L W+S DG + LT P+ V ++Y GL R + S+ +
Sbjct: 27 AQAVEMELHSTTAAQAYEVASPWGGALLDRRRL---LQTLSLGLYHLQGERAADGADYSLAMMLRLDADFGVNAHLVGGDAGAETDYARSSGSRFIPGYQVAPLDLMYGYIEGRNLAGGWLGFRLGRQYITDALGWWSFDGALVRLTTPY-----FVQAEVYGGLEQRGGLPLSTSRY 196
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A0A7C5J2Q8_9DELT (Uncharacterized protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7C5J2Q8_9DELT) HSP 1 Score: 58.9 bits (141), Expect = 4.950e-7 Identity = 55/176 (31.25%), Postives = 76/176 (43.18%), Query Frame = 1
Query: 34 NDAQAQTLTLNARTIYHAYQIPL-WPGRDAGNRNLNRFYQTLDVGGWSL-GPTGQIDAV----VSMRYDTDFGTG---FRVDTPAQA----GIPATDGRNDVDLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKLSLT-PWRSGRSSVDVQLYAGLPVRFDVVFSSEPF 519
+ AQA + Y + W G R L Y TL + ++L G D V V MR D DFG + D Q G+P VD+MY YV+ +NI G R+GRQ + D L W+S DG +SLT P+ + ++Y GL R + S+ F
Sbjct: 20 STAQAVDFEVTGDVAAQGYDVVSPWGDVVLGRRRL---YATLGLAAYNLQGDAKPFDPVYNLVVRMRVDPDFGVDSAEYNFDQANQIRYVPGLPLVP----VDMMYGYVEGKNIADGWFGFRVGRQYVTDVLGWWSFDGGMVSLTTPFY-----LKAEVYGGLEQRGGLPLSTSRF 183
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Match: A0A1V5WYF9_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium ADurb.Bin207 TaxID=1852869 RepID=A0A1V5WYF9_9DELT) HSP 1 Score: 56.6 bits (135), Expect = 2.990e-6 Identity = 47/139 (33.81%), Postives = 65/139 (46.76%), Query Frame = 1
Query: 40 AQAQTLTLNARTIYHAYQIPLWPGRDAGNRNLNRFYQTLDVGGWSLGPTGQIDAV--------VSMRYDTDFGT----GFRVDTPAQAGIPATDGRNDVDLMYAYVDWRNIVKGRLHARIGRQVLVDDLAWYSIDGIKL 420
AQA + +++ T YQ+ G +R RF QTL + +G A + MR D DF D P+ A +P R VDL+ Y D RN+ G L AR+GRQ++VD L W+S+DG L
Sbjct: 26 AQAFEVEVDSETTAQGYQLRNAWGDPVLSRR--RFLQTLGLHVVGIGENENAAASSGLDMSFHMRMRLDADFAIQPFESNYADYPS-AFVPGLQ-RAPVDLVIGYFDIRNLAGGWLSARLGRQIIVDPLGWWSLDGALL 160 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99128.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig99128.1.1 >prot_L-digitata_M_contig99128.1.1 ID=prot_L-digitata_M_contig99128.1.1|Name=mRNA_L-digitata_M_contig99128.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=173bp LVVALAALGQPNDAQAQTLTLNARTIYHAYQIPLWPGRDAGNRNLNRFYQback to top mRNA from alignment at L-digitata_M_contig99128:11..529- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig99128.1.1 ID=mRNA_L-digitata_M_contig99128.1.1|Name=mRNA_L-digitata_M_contig99128.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=519bp|location=Sequence derived from alignment at L-digitata_M_contig99128:11..529- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig99128:11..529- >mRNA_L-digitata_M_contig99128.1.1 ID=mRNA_L-digitata_M_contig99128.1.1|Name=mRNA_L-digitata_M_contig99128.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=519bp|location=Sequence derived from alignment at L-digitata_M_contig99128:11..529- (Laminaria digitata LdigPH10_18mv male)back to top |