mRNA_L-digitata_M_contig9906.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig9906.2.1
Unique NamemRNA_L-digitata_M_contig9906.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig9906.2.1 vs. uniprot
Match: A0A6P8IMK8_ACTTE (transient receptor potential cation channel subfamily A member 1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IMK8_ACTTE)

HSP 1 Score: 77.0 bits (188), Expect = 2.700e-13
Identity = 59/195 (30.26%), Postives = 81/195 (41.54%), Query Frame = 1
Query:    4 AITADDVIVVEFLLERGADPDKSVAIELLCPDTGI--------------------ATAILGERALHVAARSGYADIVRSLLEQSRADPNATDNTGYTPLMATCDSSYVCGEVVRLLLEAGADPALAQEKGLTPLHVVAQQGHMDLVDTLYSRAPAT-------LNRCASKGETPLLLACMYDHESMVSKLLSLGA 507
            A+ A+ + ++EFLL+ G D +      LL P                         TA  G   LH AAR G  D  ++LL+  R+D NA DN+G T     C S  +  ++  L LE GA+      +G   LH  A  GH  +V+ L              +N    +  TPL LAC   HE+ V   L  GA
Sbjct:  104 AVRANQIPIIEFLLDTGVDVNAQGGDNLLTPXXXXXXXXXXXXXXXXXXXXADPSTTAKDGTTPLHFAARHGGYDFAKTLLDDQRSDVNAPDNSGVTAFHLXCVSGNL--KLCELFLEHGANILXTNAEGKNALHAAAASGHAMIVEMLMETGKRKSVDLKKFINAYDFEDNTPLHLACKRGHEATVEVCLRHGA 296          
BLAST of mRNA_L-digitata_M_contig9906.2.1 vs. uniprot
Match: A0A0D9Y159_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9Y159_9ORYZ)

HSP 1 Score: 73.6 bits (179), Expect = 3.530e-12
Identity = 49/130 (37.69%), Postives = 64/130 (49.23%), Query Frame = 1
Query:  124 GERALHVAARSGYADIVRSLLEQSRADPNATDNTGYTPLMATCDSSYVCGEVVRLLLEAGADPALAQEKGLTPLHVVAQQGHMDLVDTLYSRAPATLNRCAS--KGETPLLLACMYDHESMVSKLLSLGA 507
            G  ALH AA  G+ D  R L+E+S  D N+  + G TPL        +  +V+R LL+ G DPA  +E+G TP H  A  GH + V          L+ C S      PL LA   DH+  +  LL LGA
Sbjct:   66 GLNALHFAASHGHLDCCRFLVEESGIDVNSAGHKGKTPLFYAAIDGNI--QVLRYLLDHGGDPAKPEERGGTPRHNAADNGHDEAV---------RLSSCGSCELSWAPLHLAASKDHDKAMKVLLELGA 184          
BLAST of mRNA_L-digitata_M_contig9906.2.1 vs. uniprot
Match: A0A0D9Y157_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9Y157_9ORYZ)

HSP 1 Score: 73.6 bits (179), Expect = 4.370e-12
Identity = 49/130 (37.69%), Postives = 64/130 (49.23%), Query Frame = 1
Query:  124 GERALHVAARSGYADIVRSLLEQSRADPNATDNTGYTPLMATCDSSYVCGEVVRLLLEAGADPALAQEKGLTPLHVVAQQGHMDLVDTLYSRAPATLNRCAS--KGETPLLLACMYDHESMVSKLLSLGA 507
            G  ALH AA  G+ D  R L+E+S  D N+  + G TPL        +  +V+R LL+ G DPA  +E+G TP H  A  GH + V          L+ C S      PL LA   DH+  +  LL LGA
Sbjct:  945 GLNALHFAASHGHLDCCRFLVEESGIDVNSAGHKGKTPLFYAAIDGNI--QVLRYLLDHGGDPAKPEERGGTPRHNAADNGHDEAV---------RLSSCGSCELSWAPLHLAASKDHDKAMKVLLELGA 1063          
BLAST of mRNA_L-digitata_M_contig9906.2.1 vs. uniprot
Match: A0A1X7VSD5_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VSD5_AMPQE)

HSP 1 Score: 73.2 bits (178), Expect = 5.850e-12
Identity = 46/126 (36.51%), Postives = 71/126 (56.35%), Query Frame = 1
Query:  133 ALHVAARSGYADIVRSLLEQSRADPNATDNTGYTPLMATCDSSYVCGEVVRLLLEAGADP-ALAQEKGLTPLHVVAQQGHMDLVDTLYSRA---PATLNRCASKGETPLLLACMYDHESMVSKLLS 498
            A+H+A    + DI   LL+   AD + +D+ GY PL   C+   V  ++V+LLL++GADP AL +  G T LH     G +++V+ + ++       L+   SKG +PL  AC Y H ++ S LLS
Sbjct:   50 AIHLAVEGMHKDICECLLKNG-ADTSISDSEGYAPLHIACNVGNV--QIVKLLLDSGADPEALVERIGSTTLHEAVCGGSIEVVECILNKVNNIEKLLHHQDSKGWSPLHYACQYGHLNIASALLS 172          
BLAST of mRNA_L-digitata_M_contig9906.2.1 vs. uniprot
Match: A0A5J9V283_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9V283_9POAL)

HSP 1 Score: 72.8 bits (177), Expect = 6.560e-12
Identity = 45/125 (36.00%), Postives = 70/125 (56.00%), Query Frame = 1
Query:  133 ALHVAARSGYADIVRSLLEQSRADPNATDNTGYTPLMATCDSSYVCGEVVRLLLEAGADPALAQEKGLTPLHVVAQQGHMDLVDTLYSRAPATLNRCASKGETPLLLACMYDHESMVSKLLSLGA 507
            ALH AA  G   + R L+E+ R D NA  + G +PL    +  ++    V+ LL  GADP  A +KG T LH+ +++G  ++V+ L S+  A+++  +++G TPL LA    H   V  LL+  A
Sbjct:   69 ALHFAAGHGQLKMCRYLVEELRVDVNAIHDYGESPLAYAINGRHIA--TVKYLLNHGADPDKADDKGFTSLHIASEEGFCNIVELLLSKG-ASVDALSNRG-TPLHLAATNGHHQTVKILLNHNA 189          
BLAST of mRNA_L-digitata_M_contig9906.2.1 vs. uniprot
Match: A0A446TW48_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446TW48_TRITD)

HSP 1 Score: 71.6 bits (174), Expect = 1.670e-11
Identity = 47/128 (36.72%), Postives = 67/128 (52.34%), Query Frame = 1
Query:  124 GERALHVAARSGYADIVRSLLEQSRADPNATDNTGYTPLMATCDSSYVCGEVVRLLLEAGADPALAQEKGLTPLHVVAQQGHMDLVDTLYSRAPATLNRCASKGETPLLLACMYDHESMVSKLLSLGA 507
            G+ ALH AA  G  D  + L+E+S  D ++   T  TP+        V  EV+R LL+ GADP+ A ++G   LH  A++GH + V  L  +    ++    +G TPL LA   DH  +V  LL  GA
Sbjct:  113 GQTALHFAAAKGCLDSCKFLVEESGLDVDSATKTDVTPMFYAAFGGNV--EVMRYLLDRGADPSTADDRGSVSLHNAAEEGHCEAVRLLLLKG-VHVDPMDHRG-TPLHLAVAKDHVEVVKVLLEHGA 236          
BLAST of mRNA_L-digitata_M_contig9906.2.1 vs. uniprot
Match: A0A0L0D6G7_THETB (SAPS domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D6G7_THETB)

HSP 1 Score: 70.9 bits (172), Expect = 3.790e-11
Identity = 53/138 (38.41%), Postives = 64/138 (46.38%), Query Frame = 1
Query:  118 ILGERALHVAARSGYADIVRSLLEQSRADPNATDNTGYTPLMATC----------DSSYVCGEVVRLLLEAGADPALAQEKGLTPLHVVAQQGHMDLVDTLYSRAPAT-LNRCASKGETPLLLACMYDHESMVSKLLS 498
            I G+ ALHVAA +    +V  LL     D NAT+N+GYTPL   C          DS     +VVRLLLE GADP          L   A  GH D+V TL    PAT +N     G +PL  A   +   +   L S
Sbjct: 1078 IYGDTALHVAAATRKVGVV-DLLVARGMDVNATNNSGYTPLNRACCISQVLLKDMDSRNELQQVVRLLLEHGADPERXXXXXXXXLDRAAHYGHKDVVQTLLEAQPATAVNTKDMMGISPLYRALNNERTDIAGLLFS 1214          
BLAST of mRNA_L-digitata_M_contig9906.2.1 vs. uniprot
Match: A0A6H5IH00_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IH00_9HYME)

HSP 1 Score: 70.5 bits (171), Expect = 4.580e-11
Identity = 52/136 (38.24%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  136 LHVAARSGYADIVRSLLEQSRADPNATD-NTGYTPLMATCDSSYVCGEVVRLLLEAGADPALAQEKGLTPLHVVAQQ-GHM----DLVDTLYSRAPATLNRCA------SKGETPLLLACMYDHESMVSKLLSLGA 507
            LHVA + GY +IV   LE    DPN  D +TG TPL++   +  V  +++R+LLE+GADP  A   G TPLHV+  + GH      LVD L+ R    L R        ++G +PL  A       +V  L++ GA
Sbjct:  151 LHVACQYGYPEIVEKFLEAGH-DPNCVDRSTGNTPLLSHLSNINVRQDILRMLLESGADPNAANALGATPLHVIGTRFGHNFDAESLVD-LFFRINDRLQRNVQIDARDNRGRSPLQCAVERLEADVVDALMARGA 284          
BLAST of mRNA_L-digitata_M_contig9906.2.1 vs. uniprot
Match: A0A7K6EKC7_9PASS (ANR16 protein (Fragment) n=1 Tax=Grantiella picta TaxID=266360 RepID=A0A7K6EKC7_9PASS)

HSP 1 Score: 69.3 bits (168), Expect = 9.120e-11
Identity = 46/148 (31.08%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   34 EFLLERGADPDKSVAIELLCPDTGIATAILG---ERALHVAARSGYADIVRSLLEQSRADPNATDNTGYTPLMATCDSSYVCGEVVRLLLEAGADPALAQEKGLTPLHVVAQQGHMDLVDTLYSRAPATLNRCASKGETPLLLACMYD 468
            + LL   A   +   +ELL  D G+   +     +R +H AA  G+ + V  LLE SRA  +      +TPLM  C    +  EV+R LLE GA+P L  + G    H+ +++GH +++  L   +P+  +  ++ G TPL  A  + 
Sbjct:   44 DSLLHHAARFGQRDVLELLVRDFGMDVEVANADYKRPIHEAAAMGHRECVAFLLE-SRASVDCLKKADWTPLMMACTRKNL--EVIRTLLEHGANPLLRNKDGWNCFHIASREGHPEVLQYLLDVSPSCWDTESTTGRTPLHTAGFWS 188          
BLAST of mRNA_L-digitata_M_contig9906.2.1 vs. uniprot
Match: A0A6H5IN99_9HYME (FAD-binding FR-type domain-containing protein n=2 Tax=Trichogramma TaxID=7490 RepID=A0A6H5IN99_9HYME)

HSP 1 Score: 68.6 bits (166), Expect = 2.500e-10
Identity = 61/167 (36.53%), Postives = 85/167 (50.90%), Query Frame = 1
Query:   55 ADPDKSVAIELLCPDTGIATAIL-GERALHVAARSGYADIVRSLLE---QSRADP---NATDNTGYTPLMATCDSSYVCGEVVRLLLEAGADPALAQEKGLTPLHVVAQQGHM---DLVDTLYSRAPATLNRCAS------KGETPLLLACMYDHESMVSKLLSLGA 507
            A   K V  +LL  D  ++ A   G+ ALH+ ++  Y D +  L E   ++R  P   NA D  G TPL  T  S+Y    ++R LLE GADP LA  +G T LHV+ ++      DLV+ L+ R  A+L R         +G  PL LA  Y +E ++  LL  GA
Sbjct:  307 ARDQKRVIEKLLATDADLSRANNEGQTALHLFSQKLYDDELTQLFENILENRDRPIKVNAQDKLGNTPLHLT--SAYGHHNLIRQLLERGADPNLANAEGQTALHVMCKRERYCDDDLVEALF-RICASLGRQLRVDAQDHRGNGPLHLALEYGNERVIESLLRQGA 470          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9906.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P8IMK8_ACTTE2.700e-1330.26transient receptor potential cation channel subfam... [more]
A0A0D9Y159_9ORYZ3.530e-1237.69Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
A0A0D9Y157_9ORYZ4.370e-1237.69Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
A0A1X7VSD5_AMPQE5.850e-1236.51Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A5J9V283_9POAL6.560e-1236.00Uncharacterized protein n=1 Tax=Eragrostis curvula... [more]
A0A446TW48_TRITD1.670e-1136.72Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
A0A0L0D6G7_THETB3.790e-1138.41SAPS domain-containing protein n=1 Tax=Thecamonas ... [more]
A0A6H5IH00_9HYME4.580e-1138.24Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A7K6EKC7_9PASS9.120e-1131.08ANR16 protein (Fragment) n=1 Tax=Grantiella picta ... [more]
A0A6H5IN99_9HYME2.500e-1036.53FAD-binding FR-type domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9906contigL-digitata_M_contig9906:6334..6840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FVG9
PFAMsAnk_2,Ank_3,Ank_4,RNA_GG_bind
Model size507
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.31e-20
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size507
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408648.4423995-CDS-L-digitata_M_contig9906:6333..68401682408648.4423995-CDS-L-digitata_M_contig9906:6333..6840Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9906 6334..6840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9906.2.1prot_L-digitata_M_contig9906.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig9906 6334..6840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig9906.2.1

>prot_L-digitata_M_contig9906.2.1 ID=prot_L-digitata_M_contig9906.2.1|Name=mRNA_L-digitata_M_contig9906.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=169bp
AAITADDVIVVEFLLERGADPDKSVAIELLCPDTGIATAILGERALHVAA
RSGYADIVRSLLEQSRADPNATDNTGYTPLMATCDSSYVCGEVVRLLLEA
GADPALAQEKGLTPLHVVAQQGHMDLVDTLYSRAPATLNRCASKGETPLL
LACMYDHESMVSKLLSLGA
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mRNA from alignment at L-digitata_M_contig9906:6334..6840+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig9906.2.1 ID=mRNA_L-digitata_M_contig9906.2.1|Name=mRNA_L-digitata_M_contig9906.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=507bp|location=Sequence derived from alignment at L-digitata_M_contig9906:6334..6840+ (Laminaria digitata LdigPH10_18mv male)
GCTGCCATCACGGCGGATGACGTCATTGTCGTCGAATTTTTGCTAGAGCG AGGCGCAGATCCCGACAAGTCTGTCGCAATAGAGCTGCTATGCCCAGACA CGGGCATTGCTACCGCCATTCTTGGTGAACGGGCCCTGCATGTAGCGGCA AGGAGCGGTTACGCCGACATCGTTCGCTCGCTGCTGGAGCAGTCCCGCGC CGATCCCAACGCTACCGACAACACAGGCTACACCCCACTCATGGCGACTT GCGATAGCTCGTACGTCTGCGGGGAAGTGGTGCGGCTGCTGCTCGAGGCG GGCGCCGACCCAGCCTTGGCACAAGAAAAAGGGTTAACCCCACTGCACGT GGTGGCCCAACAGGGTCACATGGACTTGGTCGACACGCTGTACTCCAGAG CACCCGCCACGCTGAACCGCTGCGCTTCCAAAGGCGAAACGCCGCTCCTT TTGGCGTGCATGTACGACCACGAGAGCATGGTGTCCAAGCTGCTGTCGCT GGGGGCG
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Coding sequence (CDS) from alignment at L-digitata_M_contig9906:6334..6840+

>mRNA_L-digitata_M_contig9906.2.1 ID=mRNA_L-digitata_M_contig9906.2.1|Name=mRNA_L-digitata_M_contig9906.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=507bp|location=Sequence derived from alignment at L-digitata_M_contig9906:6334..6840+ (Laminaria digitata LdigPH10_18mv male)
GCTGCCATCACGGCGGATGACGTCATTGTCGTCGAATTTTTGCTAGAGCG
AGGCGCAGATCCCGACAAGTCTGTCGCAATAGAGCTGCTATGCCCAGACA
CGGGCATTGCTACCGCCATTCTTGGTGAACGGGCCCTGCATGTAGCGGCA
AGGAGCGGTTACGCCGACATCGTTCGCTCGCTGCTGGAGCAGTCCCGCGC
CGATCCCAACGCTACCGACAACACAGGCTACACCCCACTCATGGCGACTT
GCGATAGCTCGTACGTCTGCGGGGAAGTGGTGCGGCTGCTGCTCGAGGCG
GGCGCCGACCCAGCCTTGGCACAAGAAAAAGGGTTAACCCCACTGCACGT
GGTGGCCCAACAGGGTCACATGGACTTGGTCGACACGCTGTACTCCAGAG
CACCCGCCACGCTGAACCGCTGCGCTTCCAAAGGCGAAACGCCGCTCCTT
TTGGCGTGCATGTACGACCACGAGAGCATGGTGTCCAAGCTGCTGTCGCT
GGGGGCG
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