mRNA_L-digitata_M_contig99012.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99012.1.1
Unique NamemRNA_L-digitata_M_contig99012.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99012.1.1 vs. uniprot
Match: D8LJY8_ECTSI (Threonine dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJY8_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.290e-8
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1 
Query:    4 SAGNHAQGVALSAKKLAVKAVIVMPLATPMIKV 102
            SAGNHAQGVALSAKKL VKAVIVMPLATPMIKV
Sbjct:  159 SAGNHAQGVALSAKKLNVKAVIVMPLATPMIKV 191
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BLAST of mRNA_L-digitata_M_contig99012.1.1 vs. uniprot
Match: A0A7Z9VMV1_9GAMM (L-threonine dehydratase n=3 Tax=root TaxID=1 RepID=A0A7Z9VMV1_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 5.510e-7
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 SSAGNHAQGVALSAKKLAVKAVIVMPLATPMIKV 102
            SSAGNHAQGVALSAKKL ++AVIVMPL+TP IKV
Sbjct:   73 SSAGNHAQGVALSAKKLGIEAVIVMPLSTPKIKV 106
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BLAST of mRNA_L-digitata_M_contig99012.1.1 vs. uniprot
Match: A0A7U3V231_9GAMM (L-threonine dehydratase n=2 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A7U3V231_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 1.030e-6
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 SSAGNHAQGVALSAKKLAVKAVIVMPLATPMIKV 102
            SSAGNHAQGVALSAKKL + A+IVMPL+TP IKV
Sbjct:   73 SSAGNHAQGVALSAKKLGISAIIVMPLSTPRIKV 106
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BLAST of mRNA_L-digitata_M_contig99012.1.1 vs. uniprot
Match: A0A1V9ZXD0_9STRA (Threonine dehydratase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXD0_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.400e-6
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    4 SAGNHAQGVALSAKKLAVKAVIVMPLATPMIKV 102
            SAGNHAQGVALSAKKL ++A IVMPLATP IKV
Sbjct:  559 SAGNHAQGVALSAKKLGIQATIVMPLATPQIKV 591
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BLAST of mRNA_L-digitata_M_contig99012.1.1 vs. uniprot
Match: A0A482Z2Z6_9BACT (L-threonine dehydratase n=5 Tax=root TaxID=1 RepID=A0A482Z2Z6_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 1.410e-6
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 SSAGNHAQGVALSAKKLAVKAVIVMPLATPMIKV 102
            SSAGNHAQGVALSAKKL +++VIVMPL+TP IKV
Sbjct:   73 SSAGNHAQGVALSAKKLGIESVIVMPLSTPKIKV 106
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BLAST of mRNA_L-digitata_M_contig99012.1.1 vs. uniprot
Match: A0A7C8DN62_9GAMM (L-threonine dehydratase n=19 Tax=root TaxID=1 RepID=A0A7C8DN62_9GAMM)

HSP 1 Score: 51.6 bits (122), Expect = 1.410e-6
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 SSAGNHAQGVALSAKKLAVKAVIVMPLATPMIKV 102
            SSAGNHAQGVALSAKKL +++VIVMPL+TP IKV
Sbjct:   73 SSAGNHAQGVALSAKKLGIESVIVMPLSTPKIKV 106
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BLAST of mRNA_L-digitata_M_contig99012.1.1 vs. uniprot
Match: A0A5D6XPQ1_9STRA (Threonine dehydratase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPQ1_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.920e-6
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    4 SAGNHAQGVALSAKKLAVKAVIVMPLATPMIKV 102
            SAGNHAQGVALSA+KL V AVIVMPLATP IKV
Sbjct:   99 SAGNHAQGVALSARKLGVSAVIVMPLATPEIKV 131
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BLAST of mRNA_L-digitata_M_contig99012.1.1 vs. uniprot
Match: A0A8K1C536_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C536_PYTOL)

HSP 1 Score: 51.2 bits (121), Expect = 1.920e-6
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    4 SAGNHAQGVALSAKKLAVKAVIVMPLATPMIKV 102
            SAGNHAQGVALSAKKL V+A IVMPLATP IK+
Sbjct:   98 SAGNHAQGVALSAKKLGVRATIVMPLATPEIKI 130
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BLAST of mRNA_L-digitata_M_contig99012.1.1 vs. uniprot
Match: A0A328RSG8_9BACT (L-threonine dehydratase n=1 Tax=Candidatus Marinamargulisbacteria bacterium SCGC AG-439-L15 TaxID=2184346 RepID=A0A328RSG8_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 1.930e-6
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 SSAGNHAQGVALSAKKLAVKAVIVMPLATPMIKV 102
            SSAGNHAQGVALSAKKL++KA IVMP+ TP IKV
Sbjct:   73 SSAGNHAQGVALSAKKLSLKATIVMPITTPAIKV 106
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BLAST of mRNA_L-digitata_M_contig99012.1.1 vs. uniprot
Match: A0A0M4NSS3_9GAMM (L-threonine dehydratase n=1 Tax=Candidatus Thioglobus autotrophicus TaxID=1705394 RepID=A0A0M4NSS3_9GAMM)

HSP 1 Score: 50.8 bits (120), Expect = 2.640e-6
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 SSAGNHAQGVALSAKKLAVKAVIVMPLATPMIKV 102
            SSAGNHAQGVALSAKKL + +VIVMPL+TP IKV
Sbjct:   73 SSAGNHAQGVALSAKKLGIDSVIVMPLSTPKIKV 106
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99012.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJY8_ECTSI3.290e-896.97Threonine dehydratase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7Z9VMV1_9GAMM5.510e-785.29L-threonine dehydratase n=3 Tax=root TaxID=1 RepID... [more]
A0A7U3V231_9GAMM1.030e-682.35L-threonine dehydratase n=2 Tax=unclassified Gamma... [more]
A0A1V9ZXD0_9STRA1.400e-684.85Threonine dehydratase n=1 Tax=Thraustotheca clavat... [more]
A0A482Z2Z6_9BACT1.410e-682.35L-threonine dehydratase n=5 Tax=root TaxID=1 RepID... [more]
A0A7C8DN62_9GAMM1.410e-682.35L-threonine dehydratase n=19 Tax=root TaxID=1 RepI... [more]
A0A5D6XPQ1_9STRA1.920e-687.88Threonine dehydratase n=1 Tax=Pythium brassicum Ta... [more]
A0A8K1C536_PYTOL1.920e-684.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A328RSG8_9BACT1.930e-682.35L-threonine dehydratase n=1 Tax=Candidatus Marinam... [more]
A0A0M4NSS3_9GAMM2.640e-682.35L-threonine dehydratase n=1 Tax=Candidatus Thioglo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99012contigL-digitata_M_contig99012:740..841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LJY8
Preferred nameILV1
PFAMsPALP,Thr_dehydrat_C
Model size102
Max annot lvl2759|Eukaryota
KEGG rclassRC00418,RC02600
KEGG koko:K01754
KEGG ReactionR00220,R00996
KEGG Pathwayko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00570
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004794,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006549,GO:0006566,GO:0006567,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009081,GO:0009082,GO:0009097,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016054,GO:0016829,GO:0016840,GO:0016841,GO:0019752,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607
Exons1
Evalue5.39e-09
EggNOG OGsCOG1171@1|root,KOG1250@2759|Eukaryota
EC4.3.1.19
DescriptionL-threonine ammonia-lyase activity
Cds size102
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408648.0983877-CDS-L-digitata_M_contig99012:739..8411682408648.0983877-CDS-L-digitata_M_contig99012:739..841Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99012 740..841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99012.1.1prot_L-digitata_M_contig99012.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99012 740..841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99012.1.1

>prot_L-digitata_M_contig99012.1.1 ID=prot_L-digitata_M_contig99012.1.1|Name=mRNA_L-digitata_M_contig99012.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=34bp
SSAGNHAQGVALSAKKLAVKAVIVMPLATPMIKV
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mRNA from alignment at L-digitata_M_contig99012:740..841-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99012.1.1 ID=mRNA_L-digitata_M_contig99012.1.1|Name=mRNA_L-digitata_M_contig99012.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=102bp|location=Sequence derived from alignment at L-digitata_M_contig99012:740..841- (Laminaria digitata LdigPH10_18mv male)
AGCAGTGCTGGTAACCACGCCCAGGGAGTGGCTCTGTCGGCGAAGAAGCT
GGCGGTGAAGGCGGTGATCGTCATGCCTTTGGCCACGCCAATGATCAAGG
TG
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Coding sequence (CDS) from alignment at L-digitata_M_contig99012:740..841-

>mRNA_L-digitata_M_contig99012.1.1 ID=mRNA_L-digitata_M_contig99012.1.1|Name=mRNA_L-digitata_M_contig99012.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=102bp|location=Sequence derived from alignment at L-digitata_M_contig99012:740..841- (Laminaria digitata LdigPH10_18mv male)
AGCAGTGCTGGTAACCACGCCCAGGGAGTGGCTCTGTCGGCGAAGAAGCT
GGCGGTGAAGGCGGTGATCGTCATGCCTTTGGCCACGCCAATGATCAAGG
TG
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