mRNA_L-digitata_M_contig99003.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99003.1.1
Unique NamemRNA_L-digitata_M_contig99003.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99003.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99003contigL-digitata_M_contig99003:112..778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size155
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408648.0600245-CDS-L-digitata_M_contig99003:112..1871682408648.0600245-CDS-L-digitata_M_contig99003:112..187Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99003 113..187 -
1682408648.07094-CDS-L-digitata_M_contig99003:700..7781682408648.07094-CDS-L-digitata_M_contig99003:700..778Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99003 701..778 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99003.1.1prot_L-digitata_M_contig99003.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99003 113..778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99003.1.1

>prot_L-digitata_M_contig99003.1.1 ID=prot_L-digitata_M_contig99003.1.1|Name=mRNA_L-digitata_M_contig99003.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=51bp
DSTGDRSERGDSEAEQNSSPGERTISRRLKLLPGWVQQFDLHLYDRLYDI
T
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mRNA from alignment at L-digitata_M_contig99003:112..778-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99003.1.1 ID=mRNA_L-digitata_M_contig99003.1.1|Name=mRNA_L-digitata_M_contig99003.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=667bp|location=Sequence derived from alignment at L-digitata_M_contig99003:112..778- (Laminaria digitata LdigPH10_18mv male)
GATTCAACGGGCGATCGCTCGGAACGAGGGGATTCTGAGGCAGAGCAAAA
TAGCTCACCCGGGGAGAGGACGATATCCGTGAGTGATGTTGATTTGAATT
CATGATATTTTTGCGTCCACAAGCGTCACGGATTTTGAATCCATGACCAA
GTATACTGCTGCTCTGCTGTACTGGTACTACAATGCTAGAACTACTATGA
TATGCACAAATATTAGTGCTACATATCATATCATATATGATACAAGTGTA
CAAATACAAGCTACTTGTACAAATACGAGTATGCATATGATATCATATGA
ACATCACATCATGATATTTTGACTCACTGGACAGCTGCTGCTGTGTATGC
AGTCTTCGCCTCGATCTGGTGACCTNNNNNNNNNNAACTACTATCATACT
GTGCTCGTTGCACGGGCTCCTTTAGCATGTTGACCATGTGCGTTTTAGTA
CAGTATAGCGTACGAGTACGTAGCTGGCTGTTCATGTGCAGCTCCTCAAG
TGACACAATTTCTCGCCTTCAGGACATGCCATGTGCCGATTGAATGCCGT
CGCTGTCTGCACTGCTGTCCGCCTCTGTGTTGTTTACAAAGCGCCGATTG
AAGTTGCTCCCGGGGTGGGTGCAGCAGTTCGACCTGCATCTGTACGATCG
TCTCTACGACATCACCA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99003:112..778-

>mRNA_L-digitata_M_contig99003.1.1 ID=mRNA_L-digitata_M_contig99003.1.1|Name=mRNA_L-digitata_M_contig99003.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=153bp|location=Sequence derived from alignment at L-digitata_M_contig99003:112..778- (Laminaria digitata LdigPH10_18mv male)
GATTCAACGGGCGATCGCTCGGAACGAGGGGATTCTGAGGCAGAGCAAAA
TAGCTCACCCGGGGAGAGGACGATATCCCGCCGATTGAAGTTGCTCCCGG
GGTGGGTGCAGCAGTTCGACCTGCATCTGTACGATCGTCTCTACGACATC
ACC
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