mRNA_L-digitata_M_contig9900.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig9900.1.1
Unique NamemRNA_L-digitata_M_contig9900.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig9900.1.1 vs. uniprot
Match: A0A6H5JI83_9PHAE (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI83_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 4.600e-30
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:   13 GHGQHLTGLGHVKDLARAMANVLGKEAAKGQVYNVQDNRAISFDGMARACAEAMGKDP 186
            GHGQHLTGLGHVKDLARAMANVLGKE+AKGQVYNVQDNRAI+FDGM RACAEAMGKDP
Sbjct:  236 GHGQHLTGLGHVKDLARAMANVLGKESAKGQVYNVQDNRAITFDGMVRACAEAMGKDP 293
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BLAST of mRNA_L-digitata_M_contig9900.1.1 vs. uniprot
Match: A0A835Z1X3_9STRA (38 kDa ribosome-associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1X3_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.460e-26
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:   13 GHGQHLTGLGHVKDLARAMANVLGKEAAKGQVYNVQDNRAISFDGMARACAEAMGKDP 186
            GHGQHLTGLGHV+DLA AMANVLGKE AKGQ+YN+QD +AI+FDGMARACA+AMGKDP
Sbjct:  191 GHGQHLTGLGHVQDLAVAMANVLGKEVAKGQIYNIQDAKAITFDGMARACAKAMGKDP 248
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BLAST of mRNA_L-digitata_M_contig9900.1.1 vs. uniprot
Match: A0A7S2XXV9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXV9_9STRA)

HSP 1 Score: 101 bits (251), Expect = 8.030e-24
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   13 GHGQHLTGLGHVKDLARAMANVLGKEAAKGQVYNVQDNRAISFDGMARACAEAMGKDPEGRTSH 204
            G GQHLTGLGHVKDLA AMANVLGKE AKGQ+YN+QD  AISFDG+ +ACA A GKDPE    H
Sbjct:  234 GPGQHLTGLGHVKDLAAAMANVLGKEVAKGQIYNIQDVNAISFDGLVKACAVAAGKDPEDVEIH 297
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BLAST of mRNA_L-digitata_M_contig9900.1.1 vs. uniprot
Match: A0A7S1TDX6_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDX6_9RHOD)

HSP 1 Score: 97.1 bits (240), Expect = 2.280e-22
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:   13 GHGQHLTGLGHVKDLARAMANVLGKEAAKGQVYNVQDNRAISFDGMARACAEAMGKDPE 189
            GHG HLTGLGHV+DLA AM  V+G  AAKG VYN+QD +A++FDG+ARACA AMGKDPE
Sbjct:  220 GHGMHLTGLGHVQDLATAMRAVIGNNAAKGSVYNIQDRKAVTFDGLARACAVAMGKDPE 278
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BLAST of mRNA_L-digitata_M_contig9900.1.1 vs. uniprot
Match: A0A0M0K122_9EUKA (NAD-dependent epimerase dehydratase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K122_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 1.240e-21
Identity = 42/59 (71.19%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:   13 GHGQHLTGLGHVKDLARAMANVLGKEAAKGQVYNVQDNRAISFDGMARACAEAMGKDPE 189
            GHGQHLTGLGHVKDLA AMANV+GK+AA G++YNVQD ++++F+G+A+ CA AMGKD E
Sbjct:  225 GHGQHLTGLGHVKDLAVAMANVIGKKAAIGKIYNVQDAQSVTFEGLAKLCANAMGKDAE 283
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BLAST of mRNA_L-digitata_M_contig9900.1.1 vs. uniprot
Match: A0A7S1U117_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U117_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.320e-21
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:   13 GHGQHLTGLGHVKDLARAMANVLGKEAAKGQVYNVQDNRAISFDGMARACAEAMGKDPE 189
            G+G HLTGLGHVKDLA AMANV+GK AA G+VYNVQD+ AISFDG+ +ACA A GKDPE
Sbjct:  213 GYGGHLTGLGHVKDLAVAMANVIGKPAAVGKVYNVQDDVAISFDGLVKACAAAAGKDPE 271
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BLAST of mRNA_L-digitata_M_contig9900.1.1 vs. uniprot
Match: A0A4D9CP52_9STRA (Epimerase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CP52_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.240e-21
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:   13 GHGQHLTGLGHVKDLARAMANVLGKEAAKGQVYNVQDNRAISFDGMARACAEAMGKDPE 189
            GHGQHLTGLGHVKDLA AMA V+G+E AKGQVYNVQ  +AI+FDG  R  A+A GKDPE
Sbjct:  218 GHGQHLTGLGHVKDLATAMAQVIGREQAKGQVYNVQHPQAITFDGAVRLAAKAAGKDPE 276
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BLAST of mRNA_L-digitata_M_contig9900.1.1 vs. uniprot
Match: A0A7S0G561_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G561_9RHOD)

HSP 1 Score: 89.7 bits (221), Expect = 1.130e-20
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:   13 GHGQHLTGLGHVKDLARAMANVLGKEAAKGQVYNVQDNRAISFDGMARACAEAMGKDP 186
            G G +LTGLGHV+DLARAMA VLG E A GQVYN+QD +AI+FDG+ RACA+A GKDP
Sbjct:  107 GSGLNLTGLGHVQDLARAMAAVLGNEKAIGQVYNIQDEKAITFDGIVRACAQAAGKDP 164
[Close]
BLAST of mRNA_L-digitata_M_contig9900.1.1 vs. uniprot
Match: A0A7S0G3V6_9RHOD (Hypothetical protein (Fragment) n=5 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G3V6_9RHOD)

HSP 1 Score: 88.6 bits (218), Expect = 2.110e-19
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:   13 GHGQHLTGLGHVKDLARAMANVLGKEAAKGQVYNVQDNRAISFDGMARACAEAMGKDP 186
            G G +LTGLGHV+DLA+AMA VLG E A GQVYN+QD +AI+FDG+ RACA+A GKDP
Sbjct:  221 GSGLNLTGLGHVQDLAKAMAAVLGNEKAIGQVYNIQDEKAITFDGIVRACAQAAGKDP 278
[Close]
BLAST of mRNA_L-digitata_M_contig9900.1.1 vs. uniprot
Match: A0A5J4YKX7_PORPP (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YKX7_PORPP)

HSP 1 Score: 89.0 bits (219), Expect = 2.670e-19
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:   13 GHGQHLTGLGHVKDLARAMANVLGKEAAKGQVYNVQDNRAISFDGMARACAEAMGKDPE 189
            GHGQHLTGLGHV DLA+AM+  LG   A G+VYN+QD +AI+FDGM +ACA AMG DP+
Sbjct:  234 GHGQHLTGLGHVMDLAKAMSACLGNPKAIGKVYNIQDEQAITFDGMVKACATAMGLDPD 292
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9900.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI83_9PHAE4.600e-3094.83NAD(P)-bd_dom domain-containing protein n=2 Tax=Ec... [more]
A0A835Z1X3_9STRA1.460e-2684.4838 kDa ribosome-associated protein n=1 Tax=Tribone... [more]
A0A7S2XXV9_9STRA8.030e-2475.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1TDX6_9RHOD2.280e-2272.88Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A0M0K122_9EUKA1.240e-2171.19NAD-dependent epimerase dehydratase n=1 Tax=Chryso... [more]
A0A7S1U117_9STRA2.320e-2176.27Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9CP52_9STRA4.240e-2174.58Epimerase domain-containing protein n=3 Tax=Monodo... [more]
A0A7S0G561_9RHOD1.130e-2072.41Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S0G3V6_9RHOD2.110e-1970.69Hypothetical protein (Fragment) n=5 Tax=Rhodosorus... [more]
A0A5J4YKX7_PORPP2.670e-1967.80Chloroplast stem-loop binding protein of 41 kDa b,... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9900contigL-digitata_M_contig9900:811..1863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LDG3
PFAMsEpimerase
Model size213
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000427,GO:0000428,GO:0001101,GO:0001871,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005777,GO:0005840,GO:0005911,GO:0005975,GO:0005996,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006412,GO:0006417,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007154,GO:0007623,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009657,GO:0009658,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0009991,GO:0010035,GO:0010287,GO:0010297,GO:0010319,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030054,GO:0030246,GO:0030247,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031668,GO:0031967,GO:0031975,GO:0032268,GO:0032270,GO:0032544,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0042254,GO:0042579,GO:0042631,GO:0042742,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0048046,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070887,GO:0071214,GO:0071229,GO:0071462,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0098542,GO:0104004,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:1990904,GO:2000112,GO:2001141
Exons2
Evalue2.76e-31
EggNOG OGs2CMCJ@1|root,2QPZ0@2759|Eukaryota
DescriptionNAD dependent epimerase/dehydratase family
Cds size213
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408647.8969548-CDS-L-digitata_M_contig9900:810..9301682408647.8969548-CDS-L-digitata_M_contig9900:810..930Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9900 811..930 +
1682408647.9133265-CDS-L-digitata_M_contig9900:1770..18631682408647.9133265-CDS-L-digitata_M_contig9900:1770..1863Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9900 1771..1863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9900.1.1prot_L-digitata_M_contig9900.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig9900 811..1863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig9900.1.1

>prot_L-digitata_M_contig9900.1.1 ID=prot_L-digitata_M_contig9900.1.1|Name=mRNA_L-digitata_M_contig9900.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=71bp
MTAAGHGQHLTGLGHVKDLARAMANVLGKEAAKGQVYNVQDNRAISFDGM
ARACAEAMGKDPEGRTSHPV*
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mRNA from alignment at L-digitata_M_contig9900:811..1863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig9900.1.1 ID=mRNA_L-digitata_M_contig9900.1.1|Name=mRNA_L-digitata_M_contig9900.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1053bp|location=Sequence derived from alignment at L-digitata_M_contig9900:811..1863+ (Laminaria digitata LdigPH10_18mv male)
ATGACTGCTGCAGGCCACGGGCAGCACCTGACCGGCCTGGGCCACGTCAA
GGACCTTGCGAGGGCCATGGCTAACGTGCTCGGAAAGGAGGCGGCTAAGG
GGCAGGTCTACAACGTGCAGGTGCGTGTCGGTGGGGTACATACTCTATGC
TCCTCCAAAATACAGGGGGGCGGTTGGAGCTGGGTGAAATAGGCCGAGAT
TCTCACCATCCCCACCGAAAATCTCCGAACGATAGGTACCATAGGTTGTT
GTTTTTTTCTCGTCCGACCGAAAATGTCCGAAAAACACGTTTTCTTTCCT
TCTTTCTTTCTTTCTTTCTTTCGACCGAAAATCTCCGAAAAAACGCTGCT
GTTTTATCTTTGGATGCCTTCCACCGAAAGAAAATCACGCAATGCCTTCC
ACCGAAAGAAAATCATTCAATGCCTTCCACCAGCGCACACAGTTAGTTGA
CGACACTTGATAATACTACTACGGGGGCCCATAATAAATAGGACCAAACA
TTATTAGTAAAAGTAGGGAAATACATAGGTTTTTGTGTGTACCGTAGGTC
CTATTTACTACGGTCCCCCGCACTAATACTGCTGGTACCTATGCCCCCAT
AACCACCCTCCAGCCTATTATCCCGTGTTCCATGTATTGTATTATTGTAG
ACATTTTTCGTGTTTCCATGCATTCCAAATTTCTCACAGTTTCCATGCAT
TCCATACATTCCATATTTTCCATTCACATTTTCCATGCATTCCAAAGTTT
CCACATTTTCCATAGTGATACATTCCATACATCCCGTATGTTCCATGCGT
TCCATATATTTTTCCCCCATGTGTTGCATACATTCCATATATTGCATATT
GCCCATATTATAGACTTCGTGTTATCTCGTATATTCCATACATCCCATAC
ATCCCATATATTTACCACACGCTCCATGTATGTCCCATACTTTGTTGTTT
TCGTCTCCAGGACAACCGCGCGATCTCTTTCGACGGCATGGCGAGGGCGT
GTGCCGAGGCCATGGGGAAGGACCCGGAAGGTAGGACATCCCATCCCGTA
TGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig9900:811..1863+

>mRNA_L-digitata_M_contig9900.1.1 ID=mRNA_L-digitata_M_contig9900.1.1|Name=mRNA_L-digitata_M_contig9900.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig9900:811..1863+ (Laminaria digitata LdigPH10_18mv male)
ATGACTGCTGCAGGCCACGGGCAGCACCTGACCGGCCTGGGCCACGTCAA
GGACCTTGCGAGGGCCATGGCTAACGTGCTCGGAAAGGAGGCGGCTAAGG
GGCAGGTCTACAACGTGCAGGACAACCGCGCGATCTCTTTCGACGGCATG
GCGAGGGCGTGTGCCGAGGCCATGGGGAAGGACCCGGAAGGTAGGACATC
CCATCCCGTATGA
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