mRNA_L-digitata_M_contig98991.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig98991.1.1 vs. uniprot
Match: A0A2E3AS67_9PROT (Uncharacterized protein n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A2E3AS67_9PROT) HSP 1 Score: 212 bits (540), Expect = 9.770e-69 Identity = 114/137 (83.21%), Postives = 123/137 (89.78%), Query Frame = 1
Query: 1 MGREEFPVGNHAVANSEGSFDMKKFIIPVLMAAAIIVPAAANAEGKPITVEIAYDKALLASDAGAAVVLESIEAQAKEACSTRSPVTSQPVVDRTCTKNIKKAALKKILDKQEISSLPTAPVFARQAVTLVADAGQR 411
MGREEFPVG A ANSEGSFDMKK IIPVLMAAA IVPAAA AEG PITVEIAYDKALLASDAGAAVVLESI+AQA+ ACSTR PVT+QP VDR+C KN+ KAALKKILD+QE+++LPTAPVFARQ TLVADAGQR
Sbjct: 1 MGREEFPVGTQADANSEGSFDMKKIIIPVLMAAATIVPAAATAEGTPITVEIAYDKALLASDAGAAVVLESIDAQARAACSTRMPVTNQPYVDRSCAKNLTKAALKKILDEQEVANLPTAPVFARQVTTLVADAGQR 137
BLAST of mRNA_L-digitata_M_contig98991.1.1 vs. uniprot
Match: A0A059E3X9_9PROT (Uncharacterized protein n=5 Tax=root TaxID=1 RepID=A0A059E3X9_9PROT) HSP 1 Score: 205 bits (522), Expect = 2.730e-66 Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 1
Query: 64 MKKFIIPVLMAAAIIVPAAANAEGKPITVEIAYDKALLASDAGAAVVLESIEAQAKEACSTRSPVTSQPVVDRTCTKNIKKAALKKILDKQEISSLPTAPVFARQAVTLVADAGQR 411
MKKFIIPVLMAAA IVPAAANAEGKPITVEIAYDKALLASDAGAAVVLESIEAQAKEACSTRSPVTSQPVVDR CTKNIKKAALKKILDKQE+SSLPTAPVFARQAVTLVADAGQR
Sbjct: 1 MKKFIIPVLMAAATIVPAAANAEGKPITVEIAYDKALLASDAGAAVVLESIEAQAKEACSTRSPVTSQPVVDRACTKNIKKAALKKILDKQEVSSLPTAPVFARQAVTLVADAGQR 116
BLAST of mRNA_L-digitata_M_contig98991.1.1 vs. uniprot
Match: A0A059E2C0_9PROT (UrcA family protein n=2 Tax=Hyphomonas TaxID=85 RepID=A0A059E2C0_9PROT) HSP 1 Score: 182 bits (461), Expect = 5.390e-57 Identity = 98/116 (84.48%), Postives = 105/116 (90.52%), Query Frame = 1
Query: 64 MKKFIIPVLMAAAIIVPAAANAEGKPITVEIAYDKALLASDAGAAVVLESIEAQAKEACSTRSPVTSQPVVDRTCTKNIKKAALKKILDKQEISSLPTAPVFARQAVTLVADAGQR 411
MKKFI+P L+AA + PAAA AEGKPITVEIAYDKALL S+AGAAVVLESIEAQAKEACS RSPVT+QP VDRTCTKNIKKAALKKIL+KQE+S L TAP FARQAVTLVADAGQR
Sbjct: 1 MKKFIVPALLAAVTLAPAAATAEGKPITVEIAYDKALLGSEAGAAVVLESIEAQAKEACSARSPVTNQPYVDRTCTKNIKKAALKKILNKQEVSGLSTAPAFARQAVTLVADAGQR 116
BLAST of mRNA_L-digitata_M_contig98991.1.1 vs. uniprot
Match: A0A062U858_9PROT (Uncharacterized protein n=1 Tax=Hyphomonas pacifica TaxID=1280941 RepID=A0A062U858_9PROT) HSP 1 Score: 156 bits (395), Expect = 6.040e-47 Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = 1
Query: 64 MKKFIIPVLMAAAIIVPAAANAEGKPITVEIAYDKALLASDAGAAVVLESIEAQAKEACSTRSPVTSQPVVDRTCTKNIKKAALKKILDKQEISSLPTAPVFARQAVTLVADAGQR 411
MKKFIIP L+AAA + PAAA AEGKPITVE++YDK LLASD GA++V+ES+E QAK AC+TRS VT+Q VDR C K++ K+A+KKIL+ QEIS L T+PVF RQA+TLVADAGQR
Sbjct: 1 MKKFIIPALLAAATLAPAAATAEGKPITVEVSYDKVLLASDMGASIVMESVEKQAKSACTTRSAVTNQAYVDRECAKHVTKSAMKKILENQEISGLDTSPVFTRQAITLVADAGQR 116
BLAST of mRNA_L-digitata_M_contig98991.1.1 vs. uniprot
Match: A0A062UDA7_9PROT (Uncharacterized protein n=1 Tax=Hyphomonas beringensis TaxID=1280946 RepID=A0A062UDA7_9PROT) HSP 1 Score: 156 bits (395), Expect = 6.040e-47 Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = 1
Query: 64 MKKFIIPVLMAAAIIVPAAANAEGKPITVEIAYDKALLASDAGAAVVLESIEAQAKEACSTRSPVTSQPVVDRTCTKNIKKAALKKILDKQEISSLPTAPVFARQAVTLVADAGQR 411
MKKFIIP L+AAA + PA A AEGKPITV+++YDK LLASD GA +V+ES+E QA+ ACS RSPVT+Q VDR C KN+ K+A+KKIL+KQE+S L T+PVFAR+AVTLVADAGQR
Sbjct: 1 MKKFIIPALLAAATLAPATAAAEGKPITVKVSYDKVLLASDMGANIVMESVEKQARAACSARSPVTNQAYVDRECAKNVAKSAMKKILEKQEVSGLDTSPVFAREAVTLVADAGQR 116
BLAST of mRNA_L-digitata_M_contig98991.1.1 vs. uniprot
Match: A0A059GB16_9PROT (Uncharacterized protein n=2 Tax=Hyphomonas oceanitis TaxID=81033 RepID=A0A059GB16_9PROT) HSP 1 Score: 88.6 bits (218), Expect = 3.460e-20 Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 1
Query: 91 MAAAIIVPAAANAEGK-PITVEIAYDKALLASDAGAAVVLESIEAQAKEACSTRSPVTSQPVVDRTCTKNIKKAALKKILDKQEISSLPTAPVFARQAVTLVADAGQR 411
MAAA+I+ A AE + PITVEI YDK LLA DAGA VV+ SI+AQAK+AC++ PV DR+C +I AA+ KI ++Q + TA FA+Q V ++ADA QR
Sbjct: 1 MAAAVILSPVAFAEAQTPITVEIQYDKDLLALDAGAPVVMASIKAQAKKACTSYVPVFGGNYTDRSCVNDIVSAAVSKINEQQALEGRETADEFAQQTVMILADAEQR 108
BLAST of mRNA_L-digitata_M_contig98991.1.1 vs. uniprot
Match: A0A062UEZ3_9PROT (Uncharacterized protein n=1 Tax=Hyphomonas chukchiensis TaxID=1280947 RepID=A0A062UEZ3_9PROT) HSP 1 Score: 87.4 bits (215), Expect = 1.220e-19 Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 1
Query: 79 IPVLMAAAIIVPAAANAEGK-PITVEIAYDKALLASDAGAAVVLESIEAQAKEACSTRSPVTSQPVVDRTCTKNIKKAALKKILDKQEISSLPTAPVFARQAVTLVADAGQR 411
I +MAAA+I+ A AE + PITVEI YDK L+A D+GA VV+ SIE+QAK+AC++ PV DR+C +I AA+ KI ++Q TA FA+QAV ++ADA QR
Sbjct: 5 IASIMAAAVILSPVAFAEAQTPITVEIEYDKDLVALDSGAPVVMASIESQAKKACTSYVPVFGGYYTDRSCVDDIVSAAISKINEQQASEGRKTADKFAQQAVMILADAEQR 116
BLAST of mRNA_L-digitata_M_contig98991.1.1 vs. uniprot
Match: A0A059FQX3_9PROT (Uncharacterized protein n=1 Tax=Hyphomonas johnsonii MHS-2 TaxID=1280950 RepID=A0A059FQX3_9PROT) HSP 1 Score: 81.6 bits (200), Expect = 2.270e-17 Identity = 53/117 (45.30%), Postives = 72/117 (61.54%), Query Frame = 1
Query: 64 MKKFIIPVLMAAAIIVPAA-ANAEGKPITVEIAYDKALLASDAGAAVVLESIEAQAKEACSTRSPVTSQPVVDRTCTKNIKKAALKKILDKQEISSLPTAPVFARQAVTLVADAGQR 411
M K +L A + P A A+ KP+TV IAYDKALL +D+GA VL I+A+A +AC++ PV D C +I+ AA+ KI D+Q L TA VFA +AV ++AD+GQR
Sbjct: 1 MLKPTATILAVAIALCPVAIADQRSKPVTVSIAYDKALLETDSGARQVLALIKAKATQACTSYVPVLGGNHTDDKCVADIQTAAIAKIHDRQVREGLATADVFASKAVMILADSGQR 117
BLAST of mRNA_L-digitata_M_contig98991.1.1 vs. uniprot
Match: A0A399RJ58_9PROT (UrcA family protein n=2 Tax=Henriciella mobilis TaxID=2305467 RepID=A0A399RJ58_9PROT) HSP 1 Score: 50.1 bits (118), Expect = 3.580e-5 Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 64 MKKFIIPVLMAAAIIVPAA-ANAEGKPITVEIAYDKALLASDAGAAVVLESIEAQAKEACSTRSPVTSQPVVDRTCTKNIKKAALKKILDKQEISSLPTAPVFARQAVT 387
MKK + +L A +I A A+ ++ YDKALLAS+ GAA VL+SIEAQA+ AC S V+ VD+ C ++ A+ +I +SS + V+ +V+
Sbjct: 1 MKKSVSSILFALSIFGGVAHADTVYSEVSATFTYDKALLASEDGAAKVLDSIEAQAERACRKVSAVSLGLTVDKVCATDLVFQAVDQI-SNTNLSSQYASSVYFTDSVS 108 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98991.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig98991.1.1 >prot_L-digitata_M_contig98991.1.1 ID=prot_L-digitata_M_contig98991.1.1|Name=mRNA_L-digitata_M_contig98991.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=138bp MGREEFPVGNHAVANSEGSFDMKKFIIPVLMAAAIIVPAAANAEGKPITVback to top mRNA from alignment at L-digitata_M_contig98991:33..446- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig98991.1.1 ID=mRNA_L-digitata_M_contig98991.1.1|Name=mRNA_L-digitata_M_contig98991.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=414bp|location=Sequence derived from alignment at L-digitata_M_contig98991:33..446- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig98991:33..446- >mRNA_L-digitata_M_contig98991.1.1 ID=mRNA_L-digitata_M_contig98991.1.1|Name=mRNA_L-digitata_M_contig98991.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=414bp|location=Sequence derived from alignment at L-digitata_M_contig98991:33..446- (Laminaria digitata LdigPH10_18mv male)back to top |