mRNA_L-digitata_M_contig9855.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-digitata_M_contig9855.2.1
Unique Name	mRNA_L-digitata_M_contig9855.2.1
Type	mRNA
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))

Homology

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BLAST of mRNA_L-digitata_M_contig9855.2.1 vs. uniprot
Match: A0A6H5KCR6_9PHAE (DUF547 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR6_9PHAE)

HSP 1 Score: 360 bits (924), Expect = 1.580e-111
Identity = 179/248 (72.18%), Postives = 197/248 (79.44%), Query Frame = 1

Query:    1 RWMPLEGLSQAEQLSVFLNLYHVMLLHAFFLLGPPGSPLRVASYFTTLSYEFGGEVFSMADLEHCILRAKTSQPKQFLSKLIIPTAEYPFSLRKPEPRVSFALNCGSISGVPGVSIYRPEDMDRQLDDAAIYYVNTTTQVLFGKRTVVLPRIVSWYSDDFNDTDNGSSSS------------------SLGCLLYVKRFLTGEKRAQVERLLSGGGQVTVKFDTWNWKCRPVTLVDASETARLRSGWP 690
            RWMPLEGLS  EQL+VFLNLYHVMLLHAFF+LGPPGSPLRVASYFTTL YE GG+V SMADLEHC+LRAKTSQP QFLSKLIIPT EYPFSLR+ EPRVSFALNCGS+SGVPG+ IYRP D+ +QL+DA+ YYV TTT+VLFGKRTVVLP+IV WYSDDFN+ +   SS                   SLGCLL+VKR+LTGEKR QVE LLS GG VTVKF  WNW+CRP TLV  SE   LRS  P
Sbjct: 1401 RWMPLEGLSHNEQLAVFLNLYHVMLLHAFFILGPPGSPLRVASYFTTLCYEVGGDVMSMADLEHCVLRAKTSQPNQFLSKLIIPTTEYPFSLRRAEPRVSFALNCGSVSGVPGILIYRPGDVHQQLEDASTYYVQTTTEVLFGKRTVVLPKIVHWYSDDFNNKEKDPSSXXXXXXXXXXXXXXTSPSPSLGCLLHVKRYLTGEKRRQVEALLSDGGSVTVKFGGWNWRCRPFTLVADSELESLRSSIP 1648

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BLAST of mRNA_L-digitata_M_contig9855.2.1 vs. uniprot
Match: D8LMK0_ECTSI (DUF547 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK0_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 1.830e-69
Identity = 118/160 (73.75%), Postives = 135/160 (84.38%), Query Frame = 1

Query:    1 RWMPLEGLSQAEQLSVFLNLYHVMLLHAFFLLGPPGSPLRVASYFTTLSYEFGGEVFSMADLEHCILRAKTSQPKQFLSKLIIPTAEYPFSLRKPEPRVSFALNCGSISGVPGVSIYRPEDMDRQLDDAAIYYVNTTTQV-----LFGKRTVVLPRIVSW 465
            RWMPLEGLS +EQL+VFLNLYHVMLLHAFF+LGPPGSPLRVASYFTTL YE GG+V SMADLEHC++RAKTSQP QFLSKLIIPT EYPF LR+ EPRVSFALNCGS+SGVPG+ IYRP D+ +QL+DA+ YYV TTT+V     +F  +T+     VSW
Sbjct: 1494 RWMPLEGLSHSEQLAVFLNLYHVMLLHAFFILGPPGSPLRVASYFTTLCYEVGGDVMSMADLEHCVMRAKTSQPNQFLSKLIIPTTEYPFCLRRAEPRVSFALNCGSVSGVPGILIYRPGDVHQQLEDASAYYVQTTTEVAAMRPVFHPQTLPALVSVSW 1653

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BLAST of mRNA_L-digitata_M_contig9855.2.1 vs. uniprot
Match: A0A835Z2G2_9STRA (DUF547 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2G2_9STRA)

HSP 1 Score: 202 bits (515), Expect = 3.870e-61
Identity = 102/228 (44.74%), Postives = 146/228 (64.04%), Query Frame = 1

Query:    1 RWMPLEGLSQ-AEQLSVFLNLYHVMLLHAFFLLGPPGSPLRVASYFTTLSYEFGGEVFSMADLEHCILRAKTSQPKQFLSKLIIPTAEYPFSLRKPEPRVSFALNCGSISGVPGVSIYRPEDMDRQLDDAAIYYVNTTTQVLFGKRTVVLPRIVSWYSDDFNDTDNGSSSSSLGCLLYVKRFLTGEKRAQVERLLSGGGQ--VTVKFDTWNWKCRPVTLVDASETARL 675
            RW+ L G    +E+L++FLNLYHV+L+HA  L+GPPGS L+ ASYF +LSYE  G+V S+A+LEH ++RA  S P+Q LSK  +P+  Y F+L  PEPRVSFALNCGS SGV G+++YR  D+DRQLD  + Y++  T +V   +  V LPR+++W+  DF  T        L  L  + +++TG K   +  LL+      +T+K   ++W+CR + LV   E   L
Sbjct:   77 RWLDLSGPGDPSERLALFLNLYHVLLMHAHLLVGPPGSALKAASYFNSLSYEVAGDVLSLAELEHGVIRAPLSAPRQCLSKFFLPSERYAFALTAPEPRVSFALNCGSESGVRGIAVYRGADVDRQLDLMSAYFLAATVEVAPARLAVTLPRVLAWFQADFGRTP-------LDALRAILKYMTGTKYNALVALLAAADTTPITIKHSHFSWRCRTLELVSTEELRAL 297

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BLAST of mRNA_L-digitata_M_contig9855.2.1 vs. uniprot
Match: A0A7R9Y7X5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y7X5_9STRA)

HSP 1 Score: 166 bits (420), Expect = 3.150e-47
Identity = 87/225 (38.67%), Postives = 130/225 (57.78%), Query Frame = 1

Query:    7 MPLEGLSQAEQLSVFLNLYHVMLLHAFFLLGPPGSPLRVASYFTTLSYEFGGEVFSMADLEHCILRAKTSQPKQFLSKLIIPTAEYPFSLRKPEPRVSFALNCGSISGVPGVSIYRPEDMDRQLDDAAIYYVNTTTQVLFGKRTVVLPRIVSWYSDDFNDTDNGSSSSSLGCLLYVKRFLTGEKRAQVERLLSG--GGQVTVKFDTWNWKCRPVTLVDASETARL 675
            + L+ LS  E++  F+N YH++L+HA+ +LGPP    + A YF  ++YE G ++FS+A+LEH I+RA  + P QFLSKL++PT+ Y ++L +PE R++F LNCGS S  P V I + E    QL     Y++  T +V   K  V LPRI  WY  DF       + ++  CL  V  FL   K+  +ER+L       ++VKF  + W CR + L+   +   L
Sbjct:   49 LDLQVLSHLEKVCFFVNTYHLLLMHAYLVLGPPRQAAKWARYFNAIAYECGDDIFSLAELEHNIIRAPMAAPSQFLSKLVLPTSVYKYALTEPEMRINFVLNCGSYSMPPCVCILQRESTSDQLSFMCRYFLQETVEVDLKKYCVTLPRICQWYHSDFG------TGTTEDCLRLVATFLINHKKDTLERMLRQLPDKLISVKFHPFRWGCRRLQLLRTDKIEAL 267

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BLAST of mRNA_L-digitata_M_contig9855.2.1 vs. uniprot
Match: A0A7S1GPY8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GPY8_CYCTE)

HSP 1 Score: 162 bits (409), Expect = 7.330e-45
Identity = 84/225 (37.33%), Postives = 145/225 (64.44%), Query Frame = 1

Query:    7 MPLEGLSQAEQLSVFLNLYHVMLLHAFFLLGPPGSPLRVASYFTTLSYEFGGEVFSMADLEHCILRAKTSQPKQFLSKLIIPTAEYPFSLRKPEPRVSFALNCGSISGVPGVSIYRPEDMDRQLDDAAIYYVNTTTQVLFGKRT---VVLPRIVSWYSDDFNDTDNGSSSSSLGCLLYVKRFLTGEKRAQVERLLSGGGQ----VTVKFDTWNWKCRPVTLVDAS 660
            + ++ L + E++S FLNLYHVM++HAF +LG P S  +  SYF  +SY+   ++FS+A+LEH ++RA T+ P QF SKL++P + + F+L K + R++F LN GS S +P V IYRP  +++QL+++A  ++ +T +V   +++   V LP+I  W++DDF    NGS++     L  V++++T E++  +E   S   Q    V +K+  ++++CR +  + AS
Sbjct:  116 VDVDSLGEKERMSFFLNLYHVMIMHAFLVLGAPDSSFKWISYFNAISYQCSDDIFSIAELEHNVIRAATTYPSQFFSKLVLPKSRFSFALTKGDYRINFCLNSGSCSNLPYVPIYRPSTLEQQLNESARRHLQSTARVTNKRQSSVVVTLPKICQWFADDFG---NGSNTQ---VLRRVQKYMTQEQQDILESCWSEREQRYSNVAIKYAPFSFECRNLAPLPAS 334

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BLAST of mRNA_L-digitata_M_contig9855.2.1 vs. uniprot
Match: A0A7S2JMK8_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JMK8_9EUKA)

HSP 1 Score: 153 bits (387), Expect = 7.980e-43
Identity = 79/208 (37.98%), Postives = 123/208 (59.13%), Query Frame = 1

Query:   40 LSVFLNLYHVMLLHAFFLLGPPGSPLRVASYFTTLSYEFGGEVFSMADLEHCILRAKTSQPKQFLSKLIIPTAEYPFSLRKPEPRVSFALNCGSISGVPGVSIYRPEDMDRQLDDAAIYYVNTTTQVLFGKRTVVLPRIVSWYSDDFNDTDNGSSSSSLGCLLYVKRFLTGEKRAQVERLLSGGGQVTVKFDTWNWKCRPVTLVDASE 663
            L+ FLNLYH+M+ HA+ LLGPP S     +++ ++SY  G E+ S+A LEHCILRA  S P  F++   +P++ Y  +L  PEPR++  +NCGSIS  P V +YR E +D+ LD+    ++     VL   RTV LP +  WY+ DF+     S S +L  + +V  ++  +     ERLL+ G    ++F  ++++CR + L+   E
Sbjct:   16 LAFFLNLYHLMVNHAYLLLGPPPSKFVWPTFYNSISYHVGDELISLAALEHCILRAPMSSPTNFVAGFFLPSSRYACALTVPEPRINCCINCGSISLPPHVPVYRAEVIDQMLDEVCKRFITERAHVLGEGRTVSLPMVFHWYARDFST--GASRSRTLDWIAFVAAYV--DDTTTRERLLNLGSSALIRFRPFSFRCRTLALLTDEE 219

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BLAST of mRNA_L-digitata_M_contig9855.2.1 vs. uniprot
Match: A0A836CH08_9STRA (DUF547 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH08_9STRA)

HSP 1 Score: 162 bits (409), Expect = 5.750e-42
Identity = 82/212 (38.68%), Postives = 133/212 (62.74%), Query Frame = 1

Query:   31 AEQLSVFLNLYHVMLLHAFFLLGPPGSPLRVASYFTTLSYEFGGEVFSMADLEHCILRAKTSQPKQFLSKLIIPTAEYPFSLRKPEPRVSFALNCGSISGVPGVSIY---RPEDMDRQLDDAAIYYVNTTTQVLFGKRTVVLPRIVSWYSDDFNDTDNGSSSSSLGCLLYVKRFLTGEKRAQVERLLSGG--GQVTVKFDTWNWKCRPVTLV 651
            +E+L++FLNLYH+M+LHA+ L+GPPG  ++  +YF  LSYEF  +V S+A+LEH +LRA  + P+QF++KL+IP+  Y F+L  PEPR+SFAL+CGS S + G+ +Y   + E + +QLD A+   +    +V      V LPR++ W+  DF  T        +  L  +  +L+G KR  +  +L+      + +K+  +++KCR + L+
Sbjct: 1230 SERLALFLNLYHLMVLHAYLLVGPPGGAIKWPAYFNGLSYEFAHDVLSLAELEHKVLRAPLTPPQQFMAKLVIPSEGYRFALTVPEPRISFALSCGSDSALRGILVYGSSKGEGVSQQLDTASAVLLQAAVEV--APPRVTLPRVLQWFQADFGRTP-------VDVLRVISWYLSGSKRTALAAMLAAADTAPIAIKYHPFSYKCRRLELL 1432

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BLAST of mRNA_L-digitata_M_contig9855.2.1 vs. uniprot
Match: A0A7S4VAX1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VAX1_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.920e-41
Identity = 85/220 (38.64%), Postives = 133/220 (60.45%), Query Frame = 1

Query:   28 QAEQLSVFLNLYHVMLLHAFFLLGPPGSPLRVASYFTTLSYEFGGEVFSMADLEHCILRAKTSQPKQFLSKLIIPTAEYPFSLRKPEPRVSFALNCGSISGVPGVSIYRPEDMDRQLDDAAIYYVNTTTQVLF----GKRTVVLPRIVSWYSDDFNDTDNGSSSSSLGCLLYVKRFLTGEKRAQVERLLSGG-----GQVTVKFDTWNWKCRPVTLVDAS 660
            ++E+L  FLNLYH+M++HAF +LG P S  + AS+F  +SY+   E+FS+ +LEH I+RA  S P QF++K ++P ++Y F+L++ + R++FALNCGS+S    V +YR E ++ QLD     YV  + +V      G   VVLPRI  WY+ DF          ++  +  VK++L    +  +   LS G     G +TVK+  +N++CR +TL+  S
Sbjct: 1002 ESERLPFFLNLYHIMVMHAFLVLGVPDSAFKWASFFNMISYQCSDEIFSLTELEHSIVRANMSSPSQFVAKFVLPKSDYDFALKRSDYRINFALNCGSLSNPKMVPVYRSETINEQLDATVRNYVKQSVKVKKNIGGGNVLVVLPRICYWYASDFG------RGRAVDVVYLVKKYLDKNIQELLPDKLSEGDWFSTGAITVKYLHYNYQCRHLTLLQDS 1215

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BLAST of mRNA_L-digitata_M_contig9855.2.1 vs. uniprot
Match: A0A7S2NHV2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NHV2_9EUKA)

HSP 1 Score: 156 bits (395), Expect = 2.730e-41
Identity = 85/219 (38.81%), Postives = 132/219 (60.27%), Query Frame = 1

Query:   19 GLSQAEQLSVFLNLYHVMLLHAFFLLGPPGSPLRVASYFTTLSYEFGGEVFSMADLEHCILRAKTSQPKQFLSKLIIPTAEYPFSLRKP--EPRVSFALNCGSISGVPGVSIYRPEDMDRQLDDAAIYYVNTTTQVLFGKRTVVLPRIVSWYSDDFNDTDNGSSSSSLGCLLYVKRFLTGEKRAQVERLLSGGGQVTVKFDTWNWKCRPVTLVDASETA 669
             L  A+QL+ FLNLYH+M+ H+F LLGPP S      YF  ++Y  G E+ S++ LEHCI+RA  S P+QFLSK  +P++ + +       +PR++F LNCGS+S  P V IYR E +D QL+  A  Y+ TT QV      V++P++ +WY+ DF     G  +S++ C  Y   FL  +K+A+V   ++     ++K+  +++ CR ++L+   E A
Sbjct:  295 SLPPADQLAFFLNLYHLMINHSFLLLGPPPSSFAWLGYFGKIAYHVGDELISLSSLEHCIIRASMSAPRQFLSKFKLPSSRFDWLQTHSVHDPRLNFNLNCGSLSLPPSVPIYRGEILDAQLEWIATRYLRTTVQVS-ADHVVMIPKVFAWYASDFAHA-RGIKASAVECAEYAANFL--QKKARVRVTVAATTFDSIKYLPFSFHCRTLSLLTDEEMA 509

[Close]

BLAST of mRNA_L-digitata_M_contig9855.2.1 vs. uniprot
Match: A0A7S2JKZ6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JKZ6_9EUKA)

HSP 1 Score: 153 bits (387), Expect = 5.390e-40
Identity = 79/208 (37.98%), Postives = 123/208 (59.13%), Query Frame = 1

Query:   40 LSVFLNLYHVMLLHAFFLLGPPGSPLRVASYFTTLSYEFGGEVFSMADLEHCILRAKTSQPKQFLSKLIIPTAEYPFSLRKPEPRVSFALNCGSISGVPGVSIYRPEDMDRQLDDAAIYYVNTTTQVLFGKRTVVLPRIVSWYSDDFNDTDNGSSSSSLGCLLYVKRFLTGEKRAQVERLLSGGGQVTVKFDTWNWKCRPVTLVDASE 663
            L+ FLNLYH+M+ HA+ LLGPP S     +++ ++SY  G E+ S+A LEHCILRA  S P  F++   +P++ Y  +L  PEPR++  +NCGSIS  P V +YR E +D+ LD+    ++     VL   RTV LP +  WY+ DF+     S S +L  + +V  ++  +     ERLL+ G    ++F  ++++CR + L+   E
Sbjct:  327 LAFFLNLYHLMVNHAYLLLGPPPSKFVWPTFYNSISYHVGDELISLAALEHCILRAPMSSPTNFVAGFFLPSSRYACALTVPEPRINCCINCGSISLPPHVPVYRAEVIDQMLDEVCKRFITERAHVLGEGRTVSLPMVFHWYARDFST--GASRSRTLDWIAFVAAYV--DDTTTRERLLNLGSSALIRFRPFSFRCRTLALLTDEE 530

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig9855.2.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig9855.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KCR6_9PHAE	1.580e-111	72.18	DUF547 domain-containing protein n=1 Tax=Ectocarpu...	[more]
D8LMK0_ECTSI	1.830e-69	73.75	DUF547 domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A835Z2G2_9STRA	3.870e-61	44.74	DUF547 domain-containing protein n=1 Tax=Tribonema...	[more]
A0A7R9Y7X5_9STRA	3.150e-47	38.67	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A7S1GPY8_CYCTE	7.330e-45	37.33	Hypothetical protein n=1 Tax=Cyclophora tenuis Tax...	[more]
A0A7S2JMK8_9EUKA	7.980e-43	37.98	Hypothetical protein n=1 Tax=Haptolina brevifila T...	[more]
A0A836CH08_9STRA	5.750e-42	38.68	DUF547 domain-containing protein n=1 Tax=Tribonema...	[more]
A0A7S4VAX1_9STRA	1.920e-41	38.64	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]
A0A7S2NHV2_9EUKA	2.730e-41	38.81	Hypothetical protein n=1 Tax=Haptolina brevifila T...	[more]
A0A7S2JKZ6_9EUKA	5.390e-40	37.98	Hypothetical protein n=1 Tax=Haptolina brevifila T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig9855	contig	L-digitata_M_contig9855:3299..9397 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	2850.Phatr45626
PFAMs	DUF547
Model size	699
Max annot lvl	2836\|Bacillariophyta
Hectar predicted targeting category	other localisation
Exons	6
Evalue	1.06e-39
EggNOG OGs	29I52@1\|root,2RRC0@2759\|Eukaryota,2XF57@2836\|Bacillariophyta
Description	Protein of unknown function, DUF547
Cds size	693
COG category	S

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig9855.2.1	prot_L-digitata_M_contig9855.2.1	Laminaria digitata LdigPH10_18mv male	polypeptide	L-digitata_M_contig9855 3299..9391 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682408643.0746007-CDS-L-digitata_M_contig9855:3298..3446	1682408643.0746007-CDS-L-digitata_M_contig9855:3298..3446	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig9855 3299..3446 -
1682408643.087974-CDS-L-digitata_M_contig9855:5270..5404	1682408643.087974-CDS-L-digitata_M_contig9855:5270..5404	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig9855 5271..5404 -
1682408643.1008322-CDS-L-digitata_M_contig9855:6747..6811	1682408643.1008322-CDS-L-digitata_M_contig9855:6747..6811	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig9855 6748..6811 -
1682408643.113684-CDS-L-digitata_M_contig9855:7087..7212	1682408643.113684-CDS-L-digitata_M_contig9855:7087..7212	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig9855 7088..7212 -
1682408643.1266816-CDS-L-digitata_M_contig9855:8082..8191	1682408643.1266816-CDS-L-digitata_M_contig9855:8082..8191	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig9855 8083..8191 -
1682408643.1393468-CDS-L-digitata_M_contig9855:9278..9391	1682408643.1393468-CDS-L-digitata_M_contig9855:9278..9391	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig9855 9279..9391 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682408643.1589904-UTR-L-digitata_M_contig9855:9391..9397	1682408643.1589904-UTR-L-digitata_M_contig9855:9391..9397	Laminaria digitata LdigPH10_18mv male	UTR	L-digitata_M_contig9855 9392..9397 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-digitata_M_contig9855:3299..9397-
coding sequence from alignment at L-digitata_M_contig9855:3299..9397-

protein sequence of mRNA_L-digitata_M_contig9855.2.1

>prot_L-digitata_M_contig9855.2.1 ID=prot_L-digitata_M_contig9855.2.1|Name=mRNA_L-digitata_M_contig9855.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=231bp
MPLEGLSQAEQLSVFLNLYHVMLLHAFFLLGPPGSPLRVASYFTTLSYEF
GGEVFSMADLEHCILRAKTSQPKQFLSKLIIPTAEYPFSLRKPEPRVSFA
LNCGSISGVPGVSIYRPEDMDRQLDDAAIYYVNTTTQVLFGKRTVVLPRI
VSWYSDDFNDTDNGSSSSSLGCLLYVKRFLTGEKRAQVERLLSGGGQVTV
KFDTWNWKCRPVTLVDASETARLRSGWPST*

mRNA from alignment at L-digitata_M_contig9855:3299..9397-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-digitata_M_contig9855.2.1 ID=mRNA_L-digitata_M_contig9855.2.1|Name=mRNA_L-digitata_M_contig9855.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=6099bp|location=Sequence derived from alignment at L-digitata_M_contig9855:3299..9397- (Laminaria digitata LdigPH10_18mv male)
AGATGGATGCCACTGGAGGGCCTGTCCCAGGCGGAGCAACTTTCGGTATT
CCTGAACCTGTACCACGTGATGCTTCTCCACGCCTTCTTCCTGCTCGGAC
CACCGGGCAGCCCCTTAAGGTTTGAGGCTAAAGCTACAACCTACGATTAC
AAGCTAAGGTTACAAGCCACGATTACAAGCAACGCTTTTCAAGTTGAGAT
TCACGACTATGGTTAAGATTCTTATTTCGAAGCTAAGAAGGGCCTAGTTA
TTCGGTGTTTGGTGTTCGGGCGGTTACCTCATCCCTTAGGCAAAGGCCTA
GCAATACAGCATCTACTATGAATACGAGTATCGTTGATTTGTTCGATTAG
TGCGTTTTACTCACTCAATTTTCCGGTGTCCAGACAATATTTTTGTGCAA
TTTTGTGCAGTTTTGTTGTTTTGGTTCATGTCCGTCCGTTTTGCTCACTC
ACTTGTCAGGCATCCGTGCGATTTTTGTTGATTTCTTGAATGCTCATCCA
TTTTTTCTCGCTCATTTACCTGGTATCGGTGCCATTTTGTGGAACTGTGA
GCAATGTTGTGCTATTTAGTTGATTTGTTCGTGTCCGTCCGTTTTTCTCG
CTCAATTCTGCGATGTCCTTGGCAAGTCTGTGCAAGTTTATTCATTTTCG
TGAATGGTTTGTTTAATTCTTCGACGTCCGTCATTTTTCCTCACTCATTT
CTCTGATTTCCGTGCAAGTCTGAGCAAGTTTGTTGATTTCTTGGATGTCC
TTCCTTTTTGTCACTGAGTCTCCTGTGTCCGTTCACATTTTGTTGATTTC
TTGGACGTACGTCGGTTTTGCTCTATATCAATTTTCCGATATCCGCGCAT
TTTTTGTTGATTTCTTCGATGTCCGTCCGTTTTTCTTGCTCGATTCTCCG
GCATCCGTGCCTTTTTCCACAAAGTGTGTTGGTTTCTTGCTTGGATGTCC
GTTTTTCCCCCTCGTTTATCCGGTACCGGTGCAGTTTTGCGCAATGTTGA
GCAATGCCAAGCATTTTTGTGCAGTTTTGTTGCTTTTTTTACGGAAGGAG
GACCCAAAAAGGTACGGACTGCTGTCGTTGTACGAGTACACTTACTACTG
CAGTACGCGGTAGCGCGGAAGAGCGAAGCACAGTCATATCCGTCTGTTTT
GCTCACCCAATTCTCTGGTGTCTGTGTAACGTTTTGTTGGTATTTTGGGT
GCCCAGGGTGGCTAGCTACTTCACGACTTTATCCTACGAATTTGGAGGCG
AGGTTTTTTCGATGGCCGACCTGGAGCACTGCATCTTGAGAGCCAAGACC
AGCCAGCCCAAGCAGGTGAGGGGTGCTGGCTTTCTTATATTGTGCTGTCT
CGTCTTATCTTGCCTTGCGTTGTCTTGTGTTGTGTTGTTTGTGTTGTGTT
GTGATGTGTTGTGTTGTGTTGTATTGTGTTGTGTTGTGCTGTGTTGTGTT
GTCTTGTCTTGTCTTATGTTGTGTTGTGTTGTGTTGTGTTTTGTTGTGCT
GTGTTGTGTTGTGTTGTGTTGTGTTGTGTTATGTTGTGTTGTGTTATGTT
GTGTTGTGTTGTGTTGTGTTGTATTGTGTTGTGTTGTGTTATATTGTGCT
TGTCTTGTCTTGTCTTGTCTTGTCTTGTCCTGTCCTGTCCAGGCTTGACT
TGGCTTGGCTTGGCCTGGCTTGATTTTTCTTGCCTTGGCTTTTCTTGCGT
TGCCTTGCGTTGCCTTGCGTTGCCCTTGCCTTCCCTTGCCTTGCCTTGCC
TTGCCTTGTCTTGCCTTGCCTTGCCTTGGTTTGCTTTGCCTTACCTTGCC
TTGCCTTGCCTTCTGGTGGCTTACGTTATCTTGCATTGTCTTGTCCTATC
TTGAAATTATTTTTCGATATTGTAGCGAAGGTATCCAAGCAACGGGCAGT
AATGTGTGCACCTGTTCCCCCTCCAAACGCCTGGTGCGATCTCTGCCATC
GTTGATGTTACGTTCGTTGCTGTCTCAGTGCGTACATAATATTACCATCC
CGACGCCCTCTATAATCCTAAACCTCAGTTCCTATCTAAGCTGACCATGC
CGACGCCCTCTAACCCTAACCGCGAAACGCCCTCTAACCCTAACCGCGAA
AAGCTCTCTAACCCTATCCGCGAAACGCCCTTTAATCCTAACCGCGAAAC
GCCCTCTGACCCTAACCGCGAACCCTAACGCTCAGTTCCTGTCGAAGCTG
ATCATCCCGACCGCCGAGTACCCCTTCTCTCTACGAAAACCTGAGCCGCG
GGTCAGTTTCGCCCTGAACTGCGGCAGCATCAGTGGAGTGCCTGGGGTGT
CGATCTACAGGTAGGTGGCGACTCACGACCGCTCTTCTTATCGAAAATCG
TTTTTTATTTTTTGTATCGCATCAAAAGGCGTTTTGCCTTCCATCTCCTG
GTACTCCGTAGTCTTTATGCTGGAACTGAAAGAAAATTTTCGGCGCATTG
ACTATCGCAGTTGCCGGTATCGTATTTAAATCGATTATCGTTTGATACCC
ATCACTTCTACCAGTAGTCGTATGTATTGTTTACCATTTTTTTTCCTCCG
TGTTTTTTTTTTGCTCGCTCTCCAACTGTGTTACAGACCCGAGGACATGG
ACCGGCAACTGGATGACGCGGCGATATACTACGTCAACACCACGACCCAA
GTGAGCCGTCAGAAAAATATCCGATCGGAAAATCATCATCATTTGCGATT
CTGAATCATCACACGTTCATATGTATTTATGGTACATATTAGATTGTCGT
TTTTCATCGTTTCCATGCTTTTATCTACCAGGTATATATTAATACTTTCT
TATAGGTTGTCCGTTTTCATACTTTCGTATTCTTAATAGTTCTCATATTC
TGCCGTCGGTCCTTCGTCCTTCTTCGTCATCATTCGTGGTCACGTCGTAT
AATGTCGTTATTTCGTCATATCACCTGTCATCGTTTTACGATTTGTCATT
TTCACGTCGATTTGTCATAAACTGCTGCCATCATTCGCCAAATTTTGGGT
TAGTGTGTTTTTTGTCATTTGATACTGTACGTAATTATCAATATTGGTCA
GATGTGTTCGCCATTTTTGGTCGGTATATTTGTCTGTTTTGTCATTGGTT
GTCGTCCTTTTTGTTTTCATTTTCTAATGTTGAGACCGATCACAAAAAAC
TGCCACTGCCACTGCCACTGCCACTGCTACGGCCACTGCCACCGCCAATG
CGGCTGCCACCGTCTTTTGCTGTACTTAGCCTGTGGTTGATTCCAACATT
GTTTGCCTTCTTCGTAGAGGCGCGTCCGTAAGCCTGTCAACGCGCGACGG
TTACACGAGGCACTCAATTTTTCTTGTTCATATTTAGGAAACATGACACC
AGCCACGGATGTGCCTGTGCCACGCTACTATGAACAGTGCTACTCGCTAC
TACAGTACCGGCCCTCTAACAGAAACCGGGATACTGGCCCAGGCTAGATT
CTTACTAGTTCGGGGAACCATTGTAATCAGGACCAACGATGGAAACCAAA
AACCACAATATTTCCTATGTTTTCTACCCCATTTCGTCCTGATGACTATG
TTTTCCGGCAGTAGGGCAAGGTTGTTTTCCACACTATTTCCTGTACAACG
CTTCCCGAACTTCATATTTTCCCCGGAAATCTCGGGCTGAGTTTCCTCTG
GAGCTCTTGATGATGATGATTATGATGATATTCTCACATTTGCGCATTTT
CATGAAATATGATATGTAGGCCGTGGTTACAAGAAAGCGAATACTACCTA
TGGTAGTACGTACATCGCATTACAAGTACGCAAGGGAACGGTACGAACGA
GCTGTTGTAACGCCATCCCGCATCACTTGCATACAAAGTGATACCAGGAA
AACATCCATAGTATGATACGTACACCCGAAAAATAGATGAAAAATGAAGG
CTGTTTTAGGGGGCCGGGTAGCGTACTCGCAGTTCTAATTTGCCGAACCC
TGACGGATGCGGTGCGATGATGCGATGGGTGGCAATATGACAGGTGCTGT
TCGGGAAGCGGACTGTGGTGCTGCCGAGGATAGTCTCTTGGTACTCGGAC
GACTTCAACGACACCGACAACGGCTCTTCGAGCTCGTCCCTTGGCTGCCT
TCTTTACGTCAAGCGCTTCCTCACCGGGTAAGGGAGGGGGGCAGGGTTGA
TTAACACTTATTCGACTAATTATATGCTGGTTTGTGGCCGACCCTCGATT
TTGGTCGGCGTGGGACCAGGGTGCTCGGTGGGCCCTACTGCCGGTGGTTG
ATTGTATACGGTGGGAGGCTCCCTATTGTGCCGGTTTATGCCAGCCAGCA
CTACCGGCACTATACCGGACACCGGCACTATTTAAACTACCGATGTTAAC
TACTTTTAATATAGTGGGTTCCAGTTGTACCAAGCGATTTCACCGGCAGT
ATACCGGCAATAGGCACTGTTCAACTGGCACTATAGAGAGCCCCCCACTG
CACCCAGGTTCAGTTTGGAGCACCCAGATTCGAGTGGGATCAGGTTGATG
TGGTATCAGGGTGTGCCAAGACGAGTGGTACGATAGAGGTATACTATTAG
TAGCATATTTTGGCGGGAAATGCTTCTGAGTGACCGGGCTCCCTTAACCC
AATATTGTTCGAATGAATCTCATTTGTTTTCCAACATTATAAAAATGTAC
CAGGTATACCTTTAGCCATGGGATTGTCCGTCGGCTTAAGCGTACGTTTT
TTTCCCCTCCCAAAGCAAAGCAAAGCCGTTTCTGGACGAGGGAGGTATGT
TTCTCCTCAAGTGAACAAACATCCTCAGAAAATGGTGTTACGTGCATCTC
TACCATAGCATGCGTCCCAAATATTGCTGCCTGTGGCCGATCTCGATTTT
AGTCGGTGTGGGATCAGGGTGCCTGGCGTGCCCTGCCGGCGGCTAACTAT
ACATTCAGGGTCAGTTTGGAGGGCAACGGTCCGGGTGGGATGAGGTCGGT
GTGATATCATGGTGCTAAGCGGGATACCCAGGTTCTGTTGGGAGGGCTCA
GGCTCGGGTGGGGTCAGGTCGGTGTGGGGTCAGCGTGGCAAGCGGGAGCC
GGGTGCAAAAAAATCGTGTTGTGTTGTGCTGGTGTGTGTTGACCATAAAG
ACATCCCAAAACATTAGTTTTTGACCAATTAATGGGAACTGTGGAACATG
TGGTAAGCCGTTTAGATCGGGAGGGAGGGAAGGAGGGTTGGGGGGGGAGG
AGGGAGGGGGGGGGGCGGGAGGGAAGGAGGGAAGGAGGGAGGAAGGGAGA
GAGAGACGGAGGCAAGAAGAGAGCGAATGGCGGAGGGTGGGAGGGAGCGG
ATGACGGAGGGTGGTGAAGTGACTCTTGTCGTCGATATATACTAGTGTAG
TACTAAACGGGTGTCGTGAGTATATTCGTGCAGAGTACCGTACAGTAGGT
ATGCCTCGGCCTGCCTGGTCCAAGAGGATGACCAGTGATTTTCCGCGACC
CGTTTTCTATTTTGTTTTTTAGTTCCAAGGGTGCCTACACTGCGAAACGT
TCAAACAGGTACAACAAAACGATTGTGTGGTACCCCGTCCATCTGTATTT
TTTATTACCATATATTACCATAAGGCTATATAGCTTGATTTATTTATGTT
CAAAAGGAGAAAGCCGCGATCTTTGTACGACAAACTTACACACTCACCAC
ATACCCCTATTCACAGAGCATAGGAGCAACCTCAGCACAAAATAATCCCA
CGCGCGTATATTTCTCCCTCCGTATCGAAAGGGATGCGTGGTCAATGTTC
AAACGACTAAGGCAACCATCAATTGAGTACGCCCCCCCCCCCTGCCGCCT
CGTCTCGAAAGGGATGCGTGACCAATGGTCAAATTACTAAGGCAAGCGGC
CAATGAGTGTGCCCTCCCCCCCCTCCCCGCTGCCCCCCCCACTCCCGCCA
TCCTACGTTTTGCAACTCTCAATTCATGGAACCGCCAAACGGGACGGATA
GCGAAAAACGTGCGCAGGTGGAGCGGCTCCTCTCTGGTGGGGGGCAAGTG
ACCGTCAAATTCGACACCTGGAACTGGAAATGCCGCCCTGTCACGTTGGT
GGACGCGTCAGAGACGGCCCGGCTGCGGTCCGGATGGCCGTCAACTTGA

Coding sequence (CDS) from alignment at L-digitata_M_contig9855:3299..9397-

>mRNA_L-digitata_M_contig9855.2.1 ID=mRNA_L-digitata_M_contig9855.2.1|Name=mRNA_L-digitata_M_contig9855.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=693bp|location=Sequence derived from alignment at L-digitata_M_contig9855:3299..9397- (Laminaria digitata LdigPH10_18mv male)
ATGCCACTGGAGGGCCTGTCCCAGGCGGAGCAACTTTCGGTATTCCTGAA
CCTGTACCACGTGATGCTTCTCCACGCCTTCTTCCTGCTCGGACCACCGG
GCAGCCCCTTAAGGGTGGCTAGCTACTTCACGACTTTATCCTACGAATTT
GGAGGCGAGGTTTTTTCGATGGCCGACCTGGAGCACTGCATCTTGAGAGC
CAAGACCAGCCAGCCCAAGCAGTTCCTGTCGAAGCTGATCATCCCGACCG
CCGAGTACCCCTTCTCTCTACGAAAACCTGAGCCGCGGGTCAGTTTCGCC
CTGAACTGCGGCAGCATCAGTGGAGTGCCTGGGGTGTCGATCTACAGACC
CGAGGACATGGACCGGCAACTGGATGACGCGGCGATATACTACGTCAACA
CCACGACCCAAGTGCTGTTCGGGAAGCGGACTGTGGTGCTGCCGAGGATA
GTCTCTTGGTACTCGGACGACTTCAACGACACCGACAACGGCTCTTCGAG
CTCGTCCCTTGGCTGCCTTCTTTACGTCAAGCGCTTCCTCACCGGCGAAA
AACGTGCGCAGGTGGAGCGGCTCCTCTCTGGTGGGGGGCAAGTGACCGTC
AAATTCGACACCTGGAACTGGAAATGCCGCCCTGTCACGTTGGTGGACGC
GTCAGAGACGGCCCGGCTGCGGTCCGGATGGCCGTCAACTTGA