mRNA_L-digitata_M_contig98539.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig98539.2.1
Unique NamemRNA_L-digitata_M_contig98539.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig98539.2.1 vs. uniprot
Match: A0A2D8PUS4_9PROT (Phosphoheptose isomerase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PUS4_9PROT)

HSP 1 Score: 288 bits (737), Expect = 1.670e-97
Identity = 145/166 (87.35%), Postives = 159/166 (95.78%), Query Frame = 1
Query:    1 MDLDAYFDTELNEHDAVVTATRALKADFIRLADICESAVNAGNKLVFFGNGGSAGDAQHLATELVCRYKVNRRALPAIAFTTDTSLLTAAANDFGYESVFARQVEALCKPGDVAIGITTSGQSPNVTLALETARDMSVVPAALSGKDGGKLVGLADPLLIVPSETT 498
            M+L+AYFD EL+EH+AV+ ATRALKA+F+RLA+I E+A+N GNKLVFFGNGGSAGDAQHLATELVCRYKVNRRALPAIAFTTDTSLLTAAANDFGY +VF+RQVEALC+PGDVAIGITTSGQSPNVT ALETARDM VVPAALSGKDGGKLVGLADPLLIVPS+TT
Sbjct:    1 MELNAYFDAELDEHEAVLAATRALKAEFVRLAEISEAAINTGNKLVFFGNGGSAGDAQHLATELVCRYKVNRRALPAIAFTTDTSLLTAAANDFGYHTVFSRQVEALCRPGDVAIGITTSGQSPNVTAALETARDMGVVPAALSGKDGGKLVGLADPLLIVPSQTT 166          
BLAST of mRNA_L-digitata_M_contig98539.2.1 vs. uniprot
Match: A0A2D7FKH4_9PROT (Phosphoheptose isomerase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FKH4_9PROT)

HSP 1 Score: 286 bits (732), Expect = 9.640e-97
Identity = 145/166 (87.35%), Postives = 154/166 (92.77%), Query Frame = 1
Query:    1 MDLDAYFDTELNEHDAVVTATRALKADFIRLADICESAVNAGNKLVFFGNGGSAGDAQHLATELVCRYKVNRRALPAIAFTTDTSLLTAAANDFGYESVFARQVEALCKPGDVAIGITTSGQSPNVTLALETARDMSVVPAALSGKDGGKLVGLADPLLIVPSETT 498
            M+LD YFD+E +EHD V  ATRALKA+FIRLADICE AVNAGNKLVFFGNGGSAGDAQHLATEL CRYKVNRRALPAIAFTTDTSLLTAAANDFGYE++FARQVEALCKPGDVA+GITTSGQSPNV LALE AR+M VVP ALSGKDGG LVGLADPLLIVPS+TT
Sbjct:    1 MNLDTYFDSEFDEHDVVARATRALKAEFIRLADICEVAVNAGNKLVFFGNGGSAGDAQHLATELTCRYKVNRRALPAIAFTTDTSLLTAAANDFGYETIFARQVEALCKPGDVAMGITTSGQSPNVILALEAARNMGVVPVALSGKDGGNLVGLADPLLIVPSDTT 166          
BLAST of mRNA_L-digitata_M_contig98539.2.1 vs. uniprot
Match: A0A3D2BSH9_9PROT (Phosphoheptose isomerase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BSH9_9PROT)

HSP 1 Score: 283 bits (723), Expect = 2.270e-95
Identity = 143/166 (86.14%), Postives = 157/166 (94.58%), Query Frame = 1
Query:    1 MDLDAYFDTELNEHDAVVTATRALKADFIRLADICESAVNAGNKLVFFGNGGSAGDAQHLATELVCRYKVNRRALPAIAFTTDTSLLTAAANDFGYESVFARQVEALCKPGDVAIGITTSGQSPNVTLALETARDMSVVPAALSGKDGGKLVGLADPLLIVPSETT 498
            MDL+AYFD EL+EH+ VV ATRALKADF+RLA++ E+A+NAGNKLVFFGNGGSAGDAQHLATELVCRYKV R+ALPAIAFTTDTSLLTAAANDFGY++VFARQVEALCKPGDVAIGITTSGQS NV LALETARDM VVPAAL+GKDGG+LVGLADP+LIVPS TT
Sbjct:    1 MDLNAYFDAELDEHETVVEATRALKADFVRLAEVSEAAINAGNKLVFFGNGGSAGDAQHLATELVCRYKVKRKALPAIAFTTDTSLLTAAANDFGYDTVFARQVEALCKPGDVAIGITTSGQSLNVILALETARDMDVVPAALTGKDGGQLVGLADPMLIVPSNTT 166          
BLAST of mRNA_L-digitata_M_contig98539.2.1 vs. uniprot
Match: A0A2S6Q9Y9_9PROT (Phosphoheptose isomerase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q9Y9_9PROT)

HSP 1 Score: 271 bits (694), Expect = 5.930e-91
Identity = 137/166 (82.53%), Postives = 152/166 (91.57%), Query Frame = 1
Query:    1 MDLDAYFDTELNEHDAVVTATRALKADFIRLADICESAVNAGNKLVFFGNGGSAGDAQHLATELVCRYKVNRRALPAIAFTTDTSLLTAAANDFGYESVFARQVEALCKPGDVAIGITTSGQSPNVTLALETARDMSVVPAALSGKDGGKLVGLADPLLIVPSETT 498
            MDLDAYF+ EL+EH+AVV  TRALKADFIRLA++ E+A+ AGNKLVFFGNGGSAGDAQHLATELVCRYKVNRRALPAIAFTTDTSLLTA ANDFGYE +F+RQVEALC  GDVAIGITTSG+S NVT ALETAR+M V+PAAL+GK+GG LVGLADP+LIVPSE T
Sbjct:    1 MDLDAYFNAELDEHEAVVAVTRALKADFIRLAEVSETAIKAGNKLVFFGNGGSAGDAQHLATELVCRYKVNRRALPAIAFTTDTSLLTATANDFGYEKIFSRQVEALCNQGDVAIGITTSGESSNVTRALETAREMGVMPAALTGKNGGNLVGLADPILIVPSEKT 166          
BLAST of mRNA_L-digitata_M_contig98539.2.1 vs. uniprot
Match: A0A6N7F693_9PROT (Phosphoheptose isomerase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7F693_9PROT)

HSP 1 Score: 214 bits (544), Expect = 4.280e-68
Identity = 108/167 (64.67%), Postives = 134/167 (80.24%), Query Frame = 1
Query:    1 MDLDAYFDTELNEHDAVVTATR-ALKADFIRLADICESAVNAGNKLVFFGNGGSAGDAQHLATELVCRYKVNRRALPAIAFTTDTSLLTAAANDFGYESVFARQVEALCKPGDVAIGITTSGQSPNVTLALETARDMSVVPAALSGKDGGKLVGLADPLLIVPSETT 498
            MD++ +FD E  EH+AVV ATR A++A F  L   C +A++ GNK++FFGNGGSA DAQHLA ELV RYKVNR  + AIA TTD+S+LTAAANDF ++S+FA QV AL +PGDVA+GI+TSG SPNV  ALE ARD+  VPAALSG+DGG+LVGLADPL++ PS+ T
Sbjct:    1 MDMNGFFDAEFAEHEAVVAATREAVRAPFAALVAACRTALDGGNKIMFFGNGGSAADAQHLAAELVVRYKVNRAPMAAIALTTDSSILTAAANDFDFDSIFALQVRALGRPGDVALGISTSGNSPNVLRALEAARDIGAVPAALSGRDGGRLVGLADPLVVAPSDVT 167          
BLAST of mRNA_L-digitata_M_contig98539.2.1 vs. uniprot
Match: A0A2N3PPJ0_9PROT (Phosphoheptose isomerase n=1 Tax=Telmatospirillum siberiense TaxID=382514 RepID=A0A2N3PPJ0_9PROT)

HSP 1 Score: 205 bits (522), Expect = 9.150e-65
Identity = 104/167 (62.28%), Postives = 128/167 (76.65%), Query Frame = 1
Query:    1 MDLDAYFDTELNEHDAVV-TATRALKADFIRLADICESAVNAGNKLVFFGNGGSAGDAQHLATELVCRYKVNRRALPAIAFTTDTSLLTAAANDFGYESVFARQVEALCKPGDVAIGITTSGQSPNVTLALETARDMSVVPAALSGKDGGKLVGLADPLLIVPSETT 498
            MD+  +FD E+ EH  +V T   A+K  F+RL + C +++  G K++FFGNGGSA DAQHLATE+V RYKVNRRALPAIA TTDTS+LTA ANDF +E +F+RQVEAL +PGDVAIGI+TSG+SPNV  ALE AR    V A  +G+DGG +VG ADPL+IVPS  T
Sbjct:    1 MDIAQFFDKEVEEHAKLVQTLGPAIKEPFLRLCESCRTSIRQGGKILFFGNGGSAADAQHLATEIVVRYKVNRRALPAIALTTDTSILTATANDFSFEEIFSRQVEALARPGDVAIGISTSGKSPNVLKALEAARAAGAVAAGFAGRDGGTMVGCADPLIIVPSSVT 167          
BLAST of mRNA_L-digitata_M_contig98539.2.1 vs. uniprot
Match: A0A355VU69_9PROT (Phosphoheptose isomerase n=1 Tax=Holosporales bacterium TaxID=2053559 RepID=A0A355VU69_9PROT)

HSP 1 Score: 204 bits (518), Expect = 8.800e-64
Identity = 103/166 (62.05%), Postives = 131/166 (78.92%), Query Frame = 1
Query:    4 DLDAYFDTELNEHDAVVTATRA-LKADFIRLADICESAVNAGNKLVFFGNGGSAGDAQHLATELVCRYKVNRRALPAIAFTTDTSLLTAAANDFGYESVFARQVEALCKPGDVAIGITTSGQSPNVTLALETARDMSVVPAALSGKDGGKLVGLADPLLIVPSETT 498
            DL A++ +E  EH AVV  T A L+ DFI L ++C  A+  GNK++FFGNGGSA D+QHLATEL  RYK NR A+PA+A TTD+S LTA  NDF +E +F+RQ+EAL + GDVA+GI+TSG+SPN+  AL+ ARD+ ++PAALSGKDGG L+GLADPLLIVP+ TT
Sbjct:   26 DLSAFYQSEFAEHKAVVDKTLASLEDDFIHLYEVCLKAIQRGNKILFFGNGGSAADSQHLATELTIRYKENRPAIPALALTTDSSALTATPNDFSFEVLFSRQIEALGQLGDVALGISTSGKSPNIIKALKVARDLDLIPAALSGKDGGDLIGLADPLLIVPAHTT 191          
BLAST of mRNA_L-digitata_M_contig98539.2.1 vs. uniprot
Match: A0A1Q4UP33_9PROT (Phosphoheptose isomerase n=5 Tax=Thalassospira TaxID=168934 RepID=A0A1Q4UP33_9PROT)

HSP 1 Score: 202 bits (514), Expect = 1.660e-63
Identity = 102/167 (61.08%), Postives = 128/167 (76.65%), Query Frame = 1
Query:    1 MDLDAYFDTELNEHDAVVTATRALKAD-FIRLADICESAVNAGNKLVFFGNGGSAGDAQHLATELVCRYKVNRRALPAIAFTTDTSLLTAAANDFGYESVFARQVEALCKPGDVAIGITTSGQSPNVTLALETARDMSVVPAALSGKDGGKLVGLADPLLIVPSETT 498
            MD++ +FD E +EH  +V  TR    D FI+L D+CE+A+NAGNKL+FFGNGGSAGDAQH+ATE   RY  NRRALPAIA TTD+S LTA  NDFG++ +F RQVEAL KPGD+AIGI+TSG S NV LAL+ AR+M +V    +G+ GG +  L DP++IVPS+TT
Sbjct:    1 MDINTFFDAEFDEHLDLVNKTRKATRDPFIKLVDLCENALNAGNKLLFFGNGGSAGDAQHIATEFTVRYVHNRRALPAIALTTDSSALTAIGNDFGFDHLFERQVEALGKPGDIAIGISTSGNSNNVNLALKKAREMGLVATGWTGRSGGDMAALCDPIMIVPSQTT 167          
BLAST of mRNA_L-digitata_M_contig98539.2.1 vs. uniprot
Match: UPI00115F2A0C (D-sedoheptulose 7-phosphate isomerase n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115F2A0C)

HSP 1 Score: 202 bits (514), Expect = 8.280e-63
Identity = 103/166 (62.05%), Postives = 127/166 (76.51%), Query Frame = 1
Query:    4 DLDAYFDTELNEHDAVVTATR-ALKADFIRLADICESAVNAGNKLVFFGNGGSAGDAQHLATELVCRYKVNRRALPAIAFTTDTSLLTAAANDFGYESVFARQVEALCKPGDVAIGITTSGQSPNVTLALETARDMSVVPAALSGKDGGKLVGLADPLLIVPSETT 498
            D+D +FD E  +H   + ATR A++  F +L   C  A+  G K++F GNGGSA DAQHLATELV RY  NR+ALP+IA TTDTSLLTAAANDF ++ VFARQVEALC+PGDV IGI+TSG SPNV  ALE A++M  + A LSG+DGGK+VGLA+PL++VPS  T
Sbjct:   56 DVDKFFDDEFEQHALTLQATREAVRGPFGQLVKACREALAGGGKILFCGNGGSAADAQHLATELVVRYTRNRKALPSIALTTDTSLLTAAANDFSFDEVFARQVEALCRPGDVVIGISTSGNSPNVLRALEAAKEMGGIAAGLSGRDGGKMVGLAEPLIVVPSTVT 221          
BLAST of mRNA_L-digitata_M_contig98539.2.1 vs. uniprot
Match: A0A2E6GT52_9PROT (Phosphoheptose isomerase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GT52_9PROT)

HSP 1 Score: 199 bits (507), Expect = 1.800e-62
Identity = 100/167 (59.88%), Postives = 125/167 (74.85%), Query Frame = 1
Query:    1 MDLDAYFDTELNEHDAVVTATR-ALKADFIRLADICESAVNAGNKLVFFGNGGSAGDAQHLATELVCRYKVNRRALPAIAFTTDTSLLTAAANDFGYESVFARQVEALCKPGDVAIGITTSGQSPNVTLALETARDMSVVPAALSGKDGGKLVGLADPLLIVPSETT 498
            MDL +YFD E  EH+ VV AT  AL+  F+ L ++ E+ +N G K++FFGNGGSA DAQHLA ELV RYK+NR  L  IA TTD+S +TA  NDFG++S+F  Q+ AL + GD+AIGITTSG SPNV  AL+ A+++  +PAA SG DGGKLVGLADPLLI+PS  T
Sbjct:    1 MDLKSYFDREFAEHETVVQATYDALQGPFMTLCEVAENTLNTGGKIMFFGNGGSAADAQHLAAELVVRYKINRAPLAGIALTTDSSTVTAGGNDFGFDSIFESQIRALGREGDLAIGITTSGNSPNVVKALQAAKEIGTIPAAFSGNDGGKLVGLADPLLIIPSNVT 167          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98539.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8PUS4_9PROT1.670e-9787.35Phosphoheptose isomerase n=1 Tax=Rhodospirillaceae... [more]
A0A2D7FKH4_9PROT9.640e-9787.35Phosphoheptose isomerase n=1 Tax=Rhodospirillaceae... [more]
A0A3D2BSH9_9PROT2.270e-9586.14Phosphoheptose isomerase n=2 Tax=Rhodospirillaceae... [more]
A0A2S6Q9Y9_9PROT5.930e-9182.53Phosphoheptose isomerase n=1 Tax=Alphaproteobacter... [more]
A0A6N7F693_9PROT4.280e-6864.67Phosphoheptose isomerase n=1 Tax=Alphaproteobacter... [more]
A0A2N3PPJ0_9PROT9.150e-6562.28Phosphoheptose isomerase n=1 Tax=Telmatospirillum ... [more]
A0A355VU69_9PROT8.800e-6462.05Phosphoheptose isomerase n=1 Tax=Holosporales bact... [more]
A0A1Q4UP33_9PROT1.660e-6361.08Phosphoheptose isomerase n=5 Tax=Thalassospira Tax... [more]
UPI00115F2A0C8.280e-6362.05D-sedoheptulose 7-phosphate isomerase n=1 Tax=Telm... [more]
A0A2E6GT52_9PROT1.800e-6259.88Phosphoheptose isomerase n=1 Tax=Rhodospirillaceae... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98539contigL-digitata_M_contig98539:470..967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1244869.H261_14010
PFAMsSIS_2
Model size498
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00434
KEGG koko:K03271
KEGG ReactionR05645,R09768,R09769
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG ModuleM00064
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.32e-63
EggNOG OGsCOG0279@1|root,COG0279@2|Bacteria,1NJ8X@1224|Proteobacteria,2VF0J@28211|Alphaproteobacteria,2JYN6@204441|Rhodospirillales
EC5.3.1.28
DescriptionCatalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate
Cds size498
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko01005
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408642.9271727-CDS-L-digitata_M_contig98539:469..9671682408642.9271727-CDS-L-digitata_M_contig98539:469..967Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig98539 470..967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98539.2.1prot_L-digitata_M_contig98539.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig98539 470..967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig98539.2.1

>prot_L-digitata_M_contig98539.2.1 ID=prot_L-digitata_M_contig98539.2.1|Name=mRNA_L-digitata_M_contig98539.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=166bp
MDLDAYFDTELNEHDAVVTATRALKADFIRLADICESAVNAGNKLVFFGN
GGSAGDAQHLATELVCRYKVNRRALPAIAFTTDTSLLTAAANDFGYESVF
ARQVEALCKPGDVAIGITTSGQSPNVTLALETARDMSVVPAALSGKDGGK
LVGLADPLLIVPSETT
back to top

mRNA from alignment at L-digitata_M_contig98539:470..967+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig98539.2.1 ID=mRNA_L-digitata_M_contig98539.2.1|Name=mRNA_L-digitata_M_contig98539.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=498bp|location=Sequence derived from alignment at L-digitata_M_contig98539:470..967+ (Laminaria digitata LdigPH10_18mv male)
ATGGATCTTGACGCTTATTTCGATACCGAGCTGAACGAGCACGATGCCGT GGTGACGGCGACGCGCGCGCTCAAGGCGGACTTCATCCGTCTGGCGGATA TCTGCGAATCTGCAGTGAATGCCGGCAACAAGCTGGTGTTTTTCGGCAAT GGCGGCAGTGCGGGCGATGCCCAGCATCTCGCGACCGAGCTCGTCTGCCG TTACAAGGTCAACCGGCGGGCGTTGCCGGCGATCGCCTTTACCACCGACA CGTCGCTTTTGACGGCGGCGGCGAATGACTTCGGGTACGAATCGGTCTTT GCCCGTCAGGTCGAGGCGCTGTGCAAACCCGGCGACGTCGCGATCGGTAT AACGACGTCGGGCCAAAGCCCGAACGTGACGCTGGCATTGGAAACCGCGC GCGACATGAGCGTCGTCCCCGCCGCGCTGAGCGGAAAAGACGGCGGGAAA CTGGTCGGTCTTGCCGATCCGCTGCTGATCGTTCCGTCCGAAACCACG
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig98539:470..967+

>mRNA_L-digitata_M_contig98539.2.1 ID=mRNA_L-digitata_M_contig98539.2.1|Name=mRNA_L-digitata_M_contig98539.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=498bp|location=Sequence derived from alignment at L-digitata_M_contig98539:470..967+ (Laminaria digitata LdigPH10_18mv male)
ATGGATCTTGACGCTTATTTCGATACCGAGCTGAACGAGCACGATGCCGT
GGTGACGGCGACGCGCGCGCTCAAGGCGGACTTCATCCGTCTGGCGGATA
TCTGCGAATCTGCAGTGAATGCCGGCAACAAGCTGGTGTTTTTCGGCAAT
GGCGGCAGTGCGGGCGATGCCCAGCATCTCGCGACCGAGCTCGTCTGCCG
TTACAAGGTCAACCGGCGGGCGTTGCCGGCGATCGCCTTTACCACCGACA
CGTCGCTTTTGACGGCGGCGGCGAATGACTTCGGGTACGAATCGGTCTTT
GCCCGTCAGGTCGAGGCGCTGTGCAAACCCGGCGACGTCGCGATCGGTAT
AACGACGTCGGGCCAAAGCCCGAACGTGACGCTGGCATTGGAAACCGCGC
GCGACATGAGCGTCGTCCCCGCCGCGCTGAGCGGAAAAGACGGCGGGAAA
CTGGTCGGTCTTGCCGATCCGCTGCTGATCGTTCCGTCCGAAACCACG
back to top