mRNA_L-digitata_M_contig98525.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig98525.2.1
Unique NamemRNA_L-digitata_M_contig98525.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98525.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98525contigL-digitata_M_contig98525:309..743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1192034.CAP_7429
PFAMsVCBS
Model size435
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.73e-05
EggNOG OGs2ANDU@1|root,31DCF@2|Bacteria,1QAIC@1224|Proteobacteria,43541@68525|delta/epsilon subdivisions,2X956@28221|Deltaproteobacteria,2Z1ZX@29|Myxococcales
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408642.703586-CDS-L-digitata_M_contig98525:308..7401682408642.703586-CDS-L-digitata_M_contig98525:308..740Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig98525 309..740 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408642.7208521-UTR-L-digitata_M_contig98525:740..7431682408642.7208521-UTR-L-digitata_M_contig98525:740..743Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig98525 741..743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98525.2.1prot_L-digitata_M_contig98525.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig98525 309..740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig98525.2.1

>prot_L-digitata_M_contig98525.2.1 ID=prot_L-digitata_M_contig98525.2.1|Name=mRNA_L-digitata_M_contig98525.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=144bp
MPSPQALSGEVRARLVDYDADGQTEVLALATGTGSGAAMVAWQSELESPA
VLRLPDDGRAYDFAPLNADGDPALEVAVLGEAGVHIADWIDGRLVWPARV
SIAPAIELFGPAAKVQAADMDGDGLTDLVMGSADRLFIYAAQQS
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mRNA from alignment at L-digitata_M_contig98525:309..743-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig98525.2.1 ID=mRNA_L-digitata_M_contig98525.2.1|Name=mRNA_L-digitata_M_contig98525.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=435bp|location=Sequence derived from alignment at L-digitata_M_contig98525:309..743- (Laminaria digitata LdigPH10_18mv male)
CCCATGCCCAGCCCTCAGGCCTTATCCGGCGAGGTCCGCGCTCGACTCGT
AGATTATGATGCGGACGGACAGACCGAAGTCCTGGCCCTGGCGACCGGCA
CGGGCAGCGGGGCTGCCATGGTGGCTTGGCAAAGCGAACTCGAGTCCCCT
GCTGTGCTCCGCCTGCCGGACGATGGTCGGGCGTATGACTTTGCGCCCCT
GAATGCCGACGGGGACCCAGCGCTGGAGGTCGCGGTCCTGGGCGAAGCCG
GGGTGCACATTGCAGACTGGATTGACGGGCGCTTGGTCTGGCCGGCCCGC
GTGAGCATCGCGCCGGCGATCGAACTCTTCGGCCCGGCCGCGAAGGTACA
GGCCGCCGATATGGACGGCGATGGGCTCACCGACCTGGTCATGGGCAGCG
CGGACCGGCTTTTTATCTACGCAGCACAGCAGAGC
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Coding sequence (CDS) from alignment at L-digitata_M_contig98525:309..743-

>mRNA_L-digitata_M_contig98525.2.1 ID=mRNA_L-digitata_M_contig98525.2.1|Name=mRNA_L-digitata_M_contig98525.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=432bp|location=Sequence derived from alignment at L-digitata_M_contig98525:309..743- (Laminaria digitata LdigPH10_18mv male)
ATGCCCAGCCCTCAGGCCTTATCCGGCGAGGTCCGCGCTCGACTCGTAGA
TTATGATGCGGACGGACAGACCGAAGTCCTGGCCCTGGCGACCGGCACGG
GCAGCGGGGCTGCCATGGTGGCTTGGCAAAGCGAACTCGAGTCCCCTGCT
GTGCTCCGCCTGCCGGACGATGGTCGGGCGTATGACTTTGCGCCCCTGAA
TGCCGACGGGGACCCAGCGCTGGAGGTCGCGGTCCTGGGCGAAGCCGGGG
TGCACATTGCAGACTGGATTGACGGGCGCTTGGTCTGGCCGGCCCGCGTG
AGCATCGCGCCGGCGATCGAACTCTTCGGCCCGGCCGCGAAGGTACAGGC
CGCCGATATGGACGGCGATGGGCTCACCGACCTGGTCATGGGCAGCGCGG
ACCGGCTTTTTATCTACGCAGCACAGCAGAGC
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