mRNA_L-digitata_M_contig98525.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig98525.1.1
Unique NamemRNA_L-digitata_M_contig98525.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig98525.1.1 vs. uniprot
Match: A0A5C6QW38_9GAMM (DAO_C domain-containing protein n=1 Tax=Colwellia sp. C1TZA3 TaxID=2508879 RepID=A0A5C6QW38_9GAMM)

HSP 1 Score: 84.7 bits (208), Expect = 2.820e-19
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 WSAQHEQVMHLDDLMLRRTRLGLILPQGGLSCLPRLQAEVGPSLDWSEQRWAAEVQRYRQAWQRAYA 201
            WSA+ EQV HLDDL+LRRTRLG +LPQG    LP+++A+  P L WSE +W  E+ RY   WQ +Y+
Sbjct:   68 WSARFEQVHHLDDLLLRRTRLGNVLPQGARELLPQVKAQCSPYLSWSELKWQQEISRYLALWQNSYS 134          
BLAST of mRNA_L-digitata_M_contig98525.1.1 vs. uniprot
Match: UPI0019EF9D8D (Glycerol-3-phosphate dehydrogenase/oxidase n=1 Tax=Chloroflexi bacterium AL-N15 TaxID=2686370 RepID=UPI0019EF9D8D)

HSP 1 Score: 89.0 bits (219), Expect = 5.810e-19
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 WSAQHEQVMHLDDLMLRRTRLGLILPQGGLSCLPRLQAEVGPSLDWSEQRWAAEVQRYRQAWQRAY 198
            W+A+ E V+HLDDL+LRRTRLGL+LPQGGL+CL  ++A     LDW E RW  E+ RY++ WQR Y
Sbjct:  458 WAARAELVVHLDDLLLRRTRLGLLLPQGGLACLDHIRAVCEGELDWDEARWEQEIARYQKLWQRYY 523          
BLAST of mRNA_L-digitata_M_contig98525.1.1 vs. uniprot
Match: UPI00191BE35A (glycerol-3-phosphate dehydrogenase/oxidase n=1 Tax=Thermus thermamylovorans TaxID=2509362 RepID=UPI00191BE35A)

HSP 1 Score: 88.6 bits (218), Expect = 7.600e-19
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 WSAQHEQVMHLDDLMLRRTRLGLILPQGGLSCLPRLQAEVGPSLDWSEQRWAAEVQRYRQAWQRAYAP 204
            W+A+ E V+HLDDL+LRR RLGL LP+GG+  L RL+  + P+L W E RW AEV+RYR  W+ AY+P
Sbjct:  450 WAAEREGVVHLDDLLLRRVRLGLTLPEGGIPLLERLRPWLQPALGWDETRWQAEVERYRGVWRSAYSP 517          
BLAST of mRNA_L-digitata_M_contig98525.1.1 vs. uniprot
Match: UPI001BDF1A31 (glycerol-3-phosphate dehydrogenase/oxidase n=1 Tax=Bacillus sp. SM2101 TaxID=2805366 RepID=UPI001BDF1A31)

HSP 1 Score: 88.2 bits (217), Expect = 1.050e-18
Identity = 36/68 (52.94%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 WSAQHEQVMHLDDLMLRRTRLGLILPQGGLSCLPRLQAEVGPSLDWSEQRWAAEVQRYRQAWQRAYAP 204
            W+A++E ++HLDDL+LRR RLG+ILP+G +S L RL+ EV   LDW ++RW  EV RY++ W++ Y+P
Sbjct:  452 WAAKYESIVHLDDLLLRRVRLGMILPEGAISILERLKVEVQSLLDWDDERWDDEVARYKKLWKQGYSP 519          
BLAST of mRNA_L-digitata_M_contig98525.1.1 vs. uniprot
Match: A0A212RV93_9CHLR (Glycerol-3-phosphate dehydrogenase n=1 Tax=Thermoflexus hugenholtzii JAD2 TaxID=877466 RepID=A0A212RV93_9CHLR)

HSP 1 Score: 87.4 bits (215), Expect = 1.940e-18
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 WSAQHEQVMHLDDLMLRRTRLGLILPQGGLSCLPRLQAEVGPSLDWSEQRWAAEVQRYRQAWQRAYAP 204
            W+A+ E V+HLDDL+LRRTRLGL LP+GGL  L R +A +   L W E RWA EVQRYRQ W+ +Y P
Sbjct:  449 WAARFEGVVHLDDLLLRRTRLGLCLPEGGLPFLRRHRARLQAMLGWDEARWAWEVQRYRQIWETSYQP 516          
BLAST of mRNA_L-digitata_M_contig98525.1.1 vs. uniprot
Match: A0A523BS76_9CHLR (Glycerol-3-phosphate dehydrogenase/oxidase n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A523BS76_9CHLR)

HSP 1 Score: 87.4 bits (215), Expect = 1.990e-18
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    1 WSAQHEQVMHLDDLMLRRTRLGLILPQGGLSCLPRLQAEVGPSLDWSEQRWAAEVQRYRQAWQRAYAPQRINCAP 225
            W+A+ EQV+HL+DL+LRRTRLGL+LP GGL+    ++A   P L WS+Q W AE   YR  WQR+Y+P     +P
Sbjct:  459 WAARAEQVVHLEDLLLRRTRLGLLLPVGGLAEFDHIRAVCQPELGWSDQHWQAEANNYRALWQRSYSPPGAEYSP 533          
BLAST of mRNA_L-digitata_M_contig98525.1.1 vs. uniprot
Match: A0A2A5M149_9GAMM (FAD-dependent oxidoreductase n=1 Tax=Marinobacter sp. ANT_B65 TaxID=2039467 RepID=A0A2A5M149_9GAMM)

HSP 1 Score: 87.0 bits (214), Expect = 2.710e-18
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 WSAQHEQVMHLDDLMLRRTRLGLILPQGGLSCLPRLQAEVGPSLDWSEQRWAAEVQRYRQAWQRAYA 201
            W+  HE V+HLDDLMLRRTRLGLILPQGG + LP L+      L+W +++W AEV RY+Q W +AY+
Sbjct:  464 WACTHEDVLHLDDLMLRRTRLGLILPQGGKALLPGLKQLCQSLLEWDDEQWFAEVARYQQLWLKAYS 530          
BLAST of mRNA_L-digitata_M_contig98525.1.1 vs. uniprot
Match: A0A1F8QS17_9CHLR (FAD-dependent oxidoreductase n=1 Tax=Chloroflexi bacterium RBG_16_57_11 TaxID=1797651 RepID=A0A1F8QS17_9CHLR)

HSP 1 Score: 86.7 bits (213), Expect = 3.670e-18
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 WSAQHEQVMHLDDLMLRRTRLGLILPQGGLSCLPRLQAEVGPSLDWSEQRWAAEVQRYRQAWQRAYAP 204
            W+A+ E V+HLDDL+LRRTRLGL+LP+GG  C   ++A V P L W E RW  EV  Y   WQR Y+P
Sbjct:  459 WAARAEAVVHLDDLLLRRTRLGLLLPRGGKDCFQSIRAVVQPELGWEEARWETEVTTYLDLWQRCYSP 526          
BLAST of mRNA_L-digitata_M_contig98525.1.1 vs. uniprot
Match: UPI001B80D0C6 (glycerol-3-phosphate dehydrogenase/oxidase n=1 Tax=Cognaticolwellia mytili TaxID=1888913 RepID=UPI001B80D0C6)

HSP 1 Score: 86.3 bits (212), Expect = 5.190e-18
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 WSAQHEQVMHLDDLMLRRTRLGLILPQGGLSCLPRLQAEVGPSLDWSEQRWAAEVQRYRQAWQRAYA 201
            WS + EQV HLDDL+LRRTRLG +LPQG    LP+++    P L WSEQ+W  EV RY   WQ+AY+
Sbjct:  532 WSVRFEQVQHLDDLLLRRTRLGNVLPQGARELLPKIKTLCSPYLSWSEQKWQEEVSRYLAIWQKAYS 598          
BLAST of mRNA_L-digitata_M_contig98525.1.1 vs. uniprot
Match: A0A3S9QBH5_9GAMM (DAO_C domain-containing protein n=1 Tax=Colwellia sp. Arc7-635 TaxID=2497879 RepID=A0A3S9QBH5_9GAMM)

HSP 1 Score: 83.6 bits (205), Expect = 6.050e-18
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 WSAQHEQVMHLDDLMLRRTRLGLILPQGGLSCLPRLQAEVGPSLDWSEQRWAAEVQRYRQAWQRAYA 201
            WS + EQV HLDDL+LRRTRLG +LP G    LP+++A   P L WSEQ+W AE+ RY   WQ +Y+
Sbjct:  162 WSVKFEQVQHLDDLLLRRTRLGNVLPAGARELLPKIKALCSPYLSWSEQQWQAEITRYLSIWQVSYS 228          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98525.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C6QW38_9GAMM2.820e-1955.22DAO_C domain-containing protein n=1 Tax=Colwellia ... [more]
UPI0019EF9D8D5.810e-1959.09Glycerol-3-phosphate dehydrogenase/oxidase n=1 Tax... [more]
UPI00191BE35A7.600e-1957.35glycerol-3-phosphate dehydrogenase/oxidase n=1 Tax... [more]
UPI001BDF1A311.050e-1852.94glycerol-3-phosphate dehydrogenase/oxidase n=1 Tax... [more]
A0A212RV93_9CHLR1.940e-1860.29Glycerol-3-phosphate dehydrogenase n=1 Tax=Thermof... [more]
A0A523BS76_9CHLR1.990e-1852.00Glycerol-3-phosphate dehydrogenase/oxidase n=3 Tax... [more]
A0A2A5M149_9GAMM2.710e-1858.21FAD-dependent oxidoreductase n=1 Tax=Marinobacter ... [more]
A0A1F8QS17_9CHLR3.670e-1855.88FAD-dependent oxidoreductase n=1 Tax=Chloroflexi b... [more]
UPI001B80D0C65.190e-1856.72glycerol-3-phosphate dehydrogenase/oxidase n=1 Tax... [more]
A0A3S9QBH5_9GAMM6.050e-1855.22DAO_C domain-containing protein n=1 Tax=Colwellia ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98525contigL-digitata_M_contig98525:1..225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1207075.PputUW4_00622
Preferred nameglpD
PFAMsDAO,DAO_C
Model size225
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00029
KEGG koko:K00111
KEGG ReactionR00848
KEGG Pathwayko00564,ko01110,map00564,map01110
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.57e-14
EggNOG OGsCOG0578@1|root,COG0578@2|Bacteria,1MUMY@1224|Proteobacteria,1RMGP@1236|Gammaproteobacteria
EC1.1.5.3
DescriptionBelongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
Cds size201
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408642.654797-UTR-L-digitata_M_contig98525:0..241682408642.654797-UTR-L-digitata_M_contig98525:0..24Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig98525 1..24 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408642.6696744-CDS-L-digitata_M_contig98525:24..2251682408642.6696744-CDS-L-digitata_M_contig98525:24..225Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig98525 25..225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98525.1.1prot_L-digitata_M_contig98525.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig98525 25..225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig98525.1.1

>prot_L-digitata_M_contig98525.1.1 ID=prot_L-digitata_M_contig98525.1.1|Name=mRNA_L-digitata_M_contig98525.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=67bp
MHLDDLMLRRTRLGLILPQGGLSCLPRLQAEVGPSLDWSEQRWAAEVQRY
RQAWQRAYAPQRINCAP
back to top

mRNA from alignment at L-digitata_M_contig98525:1..225+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig98525.1.1 ID=mRNA_L-digitata_M_contig98525.1.1|Name=mRNA_L-digitata_M_contig98525.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=225bp|location=Sequence derived from alignment at L-digitata_M_contig98525:1..225+ (Laminaria digitata LdigPH10_18mv male)
TGGTCCGCGCAGCACGAACAAGTGATGCACCTGGACGACCTGATGCTGCG ACGCACCCGCCTGGGACTCATCCTTCCTCAAGGCGGGCTGTCCTGCCTGC CGCGCCTGCAGGCCGAGGTGGGGCCCAGCCTGGACTGGTCTGAGCAGCGC TGGGCCGCTGAGGTGCAGCGCTATCGACAAGCCTGGCAGCGCGCCTATGC GCCTCAGCGCATCAACTGCGCGCCC
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig98525:1..225+

>mRNA_L-digitata_M_contig98525.1.1 ID=mRNA_L-digitata_M_contig98525.1.1|Name=mRNA_L-digitata_M_contig98525.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=201bp|location=Sequence derived from alignment at L-digitata_M_contig98525:1..225+ (Laminaria digitata LdigPH10_18mv male)
ATGCACCTGGACGACCTGATGCTGCGACGCACCCGCCTGGGACTCATCCT
TCCTCAAGGCGGGCTGTCCTGCCTGCCGCGCCTGCAGGCCGAGGTGGGGC
CCAGCCTGGACTGGTCTGAGCAGCGCTGGGCCGCTGAGGTGCAGCGCTAT
CGACAAGCCTGGCAGCGCGCCTATGCGCCTCAGCGCATCAACTGCGCGCC
C
back to top