mRNA_L-digitata_M_contig9843.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig9843.1.1
Unique NamemRNA_L-digitata_M_contig9843.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9843.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9843contigL-digitata_M_contig9843:2678..7656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size496
Hectar predicted targeting categoryother localisation
Exons5
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408641.3163235-CDS-L-digitata_M_contig9843:2677..27771682408641.3163235-CDS-L-digitata_M_contig9843:2677..2777Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9843 2678..2777 +
1682408641.329858-CDS-L-digitata_M_contig9843:4318..44501682408641.329858-CDS-L-digitata_M_contig9843:4318..4450Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9843 4319..4450 +
1682408641.3536165-CDS-L-digitata_M_contig9843:6660..67501682408641.3536165-CDS-L-digitata_M_contig9843:6660..6750Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9843 6661..6750 +
1682408641.370361-CDS-L-digitata_M_contig9843:7299..73951682408641.370361-CDS-L-digitata_M_contig9843:7299..7395Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9843 7300..7395 +
1682408641.3863688-CDS-L-digitata_M_contig9843:7579..76561682408641.3863688-CDS-L-digitata_M_contig9843:7579..7656Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9843 7580..7656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9843.1.1prot_L-digitata_M_contig9843.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig9843 2678..7656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig9843.1.1

>prot_L-digitata_M_contig9843.1.1 ID=prot_L-digitata_M_contig9843.1.1|Name=mRNA_L-digitata_M_contig9843.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=165bp
MRSPSRSQRSPPASLRSNATKRKIADSLDWSVAGPESKQETRLCRRIERL
RQIHDRRGRTEGGGGEGRGGGGRGRRDANTWYMKAGKMVDRGTEGAMKMT
DGGASREARNGLTEKEWADPETPDHIARKKKRLEDDAKGANTWYMKAGKM
VDRGTEGAMKMTDGG
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mRNA from alignment at L-digitata_M_contig9843:2678..7656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig9843.1.1 ID=mRNA_L-digitata_M_contig9843.1.1|Name=mRNA_L-digitata_M_contig9843.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=4979bp|location=Sequence derived from alignment at L-digitata_M_contig9843:2678..7656+ (Laminaria digitata LdigPH10_18mv male)
ATGCGTTCTCCGTCGAGAAGCCAAAGGTCACCGCCGGCCTCACTTCGGAG
CAACGCGACGAAAAGGAAGATTGCGGACAGCCTCGATTGGTCGGTCGCAG
GTAGGTAAACAGAACATCGTTTTTAGTTTGGCATCTACTGTTGCAGAAAG
CGTCTCGAAGTTTAATGACCACGACGCTGCATCAACTTCATGCGCAAGTT
CCCCCATCACTACAGGGCACCGGGTATCATCCCTCATCCCTCATGGCCAT
CCATTCCCATGAACCACTTCGTACCAATTAGTCTTTGCTCGAGCACAAAC
TAACGGGCTGCAAAACAGCCGCCTCCTATGCTGTGCTCACCCAGTCTTGT
GGATTGTCAACTAAGCAAGCCGTGCTCCCTGCTTTGTCGTGGGGGCCCCT
TGTGTGTTTCATGCCGAGATAAATGTTCTGTTTTGTCGAGACAGTAACTC
CTACCTCCAAGCATTACAGCAGCAGCAAATAGAACTAAGCCATCCAATCA
GCATCAGGCAGCAGGAGCCACGCATCACCCAAATGCGCACCGAGTGGCGT
GGACAGGAACCGCTCGTTGGGACACCTGCTATGTTTTTGTGGCCTCTCTT
GTGCTTCTTGGCTACTAAATCTAATGCGCAAGTGTGTCGACATAACAGCA
TCTATCATACCTGGGAATTTTACATCAGCAGCAGCAGGACCCAGTCTGTA
AGATACGCAGACAGGAATCGTTCTTTATCTCTGTTGCCACACCGAGCCGG
CCACCACCCGCAGGATTGCCAACGCCCAAGTTGATAACTTAGAGTCTCGA
CACCACGAGATCGCGTCTGCATGCAATGACGACAGCGCACACCGGCCTGA
CGTTCTTTTGTCTAGGTCAATGCTATCCGATATGCCGCCTATTGTTTGTG
TTAGTTGCTGTTTCACTTTTCTGTTGCCAGGGCAACATGGCGGCGCAGCC
TGTGGGGCTGCTCGGCCAACTGCGATTGTGCGATTCCTTTTGTTTTTTCT
TATTCCTGGTTTCATATTTTCTTCCACCTAAGTTGAACTCCAGGAATACA
ACAGTACAGCAGTGACAATGTTTACTGGAGCCTGTACTGTAGCCGAACAG
CAAGAACAGCAAACCGAAGCGGGCGACGAGACACCAACAACCATAAACGT
TGACGACAGTTACAAATATCGTCCTGCGATAGTTCCTGGCGACAGCTATT
CTATCTGACATACAAATCAGCCAGCCCTAGAACTTATCGAAAATAATAAA
TCCGCGACCGCGGGTGGATCCCTAGAAGAAGAAGAAGGATTATTACAGGA
AAATAACTTACATCATCTCGAAACGTACTTGCTAATTCGTTGTTGAAATG
ACGCCTCCGTACCATTGCCCAAGGGTGCCAACCTCCCTCCTTTTCTAGCC
CCCCGCCCGTTCATTAGCAATGTCCCATAAGCCCCACATCGCAAGCATGA
CATGGAAAGGAAAGGTTTGTTTTGGAACTAAACACGCACAAGTATGTAGC
AGTAGGAGAGTTATCGTGAGCACAGATATAAGATATATGGGCACGATGAA
TACAAGCTTGGTATTACGCAGGCTCCTGTTGCCGCCACGATGTTTGCCAC
GCCGATTGACGTTGTCATTCAAATAAATGCTGCACGGGCAGGACCAGAAA
GCAAACAGGAAACTAGACTATGTCGAAGAATCGAACGACTACGGCAAATT
CACGATCGAAGAGGAAGGACTGAAGGAGGAGGAGGAGAAGGAAGAGGAGG
AGGCGGAAGAGGAAGAAGAGACGGTGGGTGTGGAGAGATGTTCGGGTTCC
AATGGTCACTTTGTTTGTAGGCACATACATCGCCTGTTTTTTTACCTCAA
CTCTACATGAAAGGATACGTACGATCGACGAGTAACATCTCACCCGACAA
TTTGTATTATTTTGGCCACGCCTCAGGAACCACATACTTCAGGTAGGTTC
ACCTCAGCCCCCCAAATTCACTTGGCTACATGTCACCGATCTCTACCTTT
CGTGATTTCACCGCCACGGGTTTCTTATCCTCTTCTTTTCAAATCCATGC
CATGATGCTATCCGCCACACACCAGCCCACCAGAACGAATAAAAGGAGTT
ATCACTACTACCGCCCCGTCGAGGCAGAGTTCCAGGAAATGACCACAGCG
CACCTCTTTGATGAGGGCCACATTGCAATTGGAAATTATCCATACGACCA
CAAAGGCTTCGTCGCGGAAGCTGAGGAGTTCAATGGCAAGGGGCTGTGGC
GCAGGTAACCCAGCGGGCCGTCTACCCTACACAACAACATTCTCCTCGCG
AAACAATTTCCATCGCTGGGTGCGTTCTTGGGCAGACTGCAGGAGTTGTT
GAAGCCACGTAAGTCTACAGATCGTAAGTTCCTCAAGCAGAGGATCCAGC
AGAACGTCATGTCTGGTCGACGACACAGGAACGGCAACAACGGAAAGTAT
CGTATTTGCGGGACAGCATGCGACCCGGCCGCCCCATCCTACATCAAGCA
GATGGACATTGGCGTTGTCGACGCCAAGACGGCGAAGGGTGGCTGGGCCG
TTAATTCTTGGCAGATCCTTGACGACGGAACCGAAGATGTGAGGCGGATC
CCGCTCGGATCTGGAAGATATCACATCATGAGCGACGTGGCCAGCAGCAG
CTCACATGCACACCACCAGGTGGTGGTCGACGAGGACCTCCTGACAATAT
TTGGAGCGCTGACGACGTGGGTAGTCGACTGCGACCCAAAAGACCCGATG
ACTTTCATCGACGACGTCGCGAGAGCCGCCGCGGATGTGAGCGAGGAGGT
CGGAGCCGCAGATGGCGTACCGGCCTTCGTACCCCCCCCGTCCGCCGGTC
AGATCACGGAGTCATCTTTTGCCCAGCAGAGACGAGACTATCATAAGCTT
GCAAAAGAGACGAACCCGGATAAATACCGCACAGACCAGGGGCTAAGAGG
TACACAAAACCTTTGAAATAAGTTTACACCCCGGTCGTGCCTAATCTGTG
TTATTGATTGAACTGTTCGAAGCATTTAGTGTGTCTTTCGTCCGCGGGGT
GGGGGAGGGGGGGGGGGGGGGGGGGGGGGCTTTTTTTTTTTTCCTGCTCC
ACCCGCCGGTTTGTGTGGGTGNNNNNNNNNNGTTTTTTGTTATTTTTTTT
TTGTTTTTGTCGGTGTGGTTGGGGGGTGGGGGGGGGGGGGGGGGGGCAGC
AATATTTGTTCTTCAGTCTCTCCAAACTGCTTGCTTTCGGCTTAATTCCT
GGCTTTCCTGCAGAAACAAACGGAGTTGTTGCTGGTAATGTGCGTTGACG
GAGTTATGCTGTATGTATCCCGTCGTTGTGCTTAATATGCGATATGCTGC
CCGTTCAACCGTAGCATTGAACGTTAGCGCCAAATTGAATGCAACTTCGC
AAACTCTATCCAATGCCCACGTCTTTTCTCTTATTTCCAAAAGAGGGGTT
TGCAAGAGAGTATCTAATAGTATTGATTGTGTTGTACACCTCAGAAACCC
CCGCGGTTGCTCCATGTAATTATTGTGCATTTTGTTCCACGCTTTCACGG
TCTACCCGGTTGTTTCAAGAAAGAGTCTGGTGTTGTAGTTTCCGTGGGTG
ATGCTGTTGTAGGAGATGTTCGGCCTACTGGCCAGCCCATACCCGCGTCC
CCCCATTTCAATGTTTTCGCACGTTTCTCTCGCGTGCCTCTGTTCTTTTC
TTGCCCTCTCTCCGATCTCCTACATGCCTTGATGGAATGTGGCTCATCCT
CGCGCGATATATTTCAGGAAAGATCGGAGGTGAGGTGCACGGCGTTTTCT
GATTGTTGGCGTCTGTTTATTGTCAAATTGTTGTTGCCCTTATTATGCGA
TATGCTGCTCGTTCAACCGTGGCATTGAACGTTGGCGCCAAATTGAATGC
AACTTCGCAAACTCTATCCAATGCCCACGTTCCAATGCCCACGTCTTTTC
TCTTGTTTCCGCGTTGCCGTCTCCCCTGCATAGCCAACACTTGGTATATG
AAGGCCGGAAAGATGGTTGACCGCGGCACAGAGGGAGCCATGAAGATGAC
AGACGGAGGAGCCTCCAGGGAGGGTGAGAATGGGACAGCTTTGATGTTGT
CAAATTGTTGATACCCTTATTATGCGATATGCTGCCCGTTCAACCGTAGC
ATTGAACGTTGGCGCCAAATTGAATGCAACTTCGCAAACTCTATCCAATG
CCCACGTAATTTCTATTATTTTCGTGTTGCCTGTCTCTTCCTGTCTCGTT
AGGCACAATGATACGACGGCGTGATAAACAACGCATTGATACAAAAAGTT
AAAGCAGCGACTGTTTTGGTTCCACCTCGTGATTTACGGTTGTTCTCCGG
TCGTTTCAAGGAAAAGCGGCAATCAAGAAGAGGAAACAGGACCCTGTGAA
GTACAGGGACGACTGTTCTGCCGGGGGTGAGATATAGTAGTGTAATTGTT
TGTGTTTTGGTCTGAGGAATCATGAAACATTGCCGCCGTAACACCATAAC
TTATTATGCGATATACTGCCCGTTCAACCGTAGCGTTGAACGTTGGCGCC
TAATTGAATGCAACTTCGCAAACTCTATCCAATGCCCACGTCTTTTCTCA
TATACCTTGGTCGTTAACACAGCGAGGAACGGCCTCACGGAGAAGGAGTG
GGCGGACCCCGAAACACCCGACCACATAGCCCGAAAGAAGAAGAGGCTAG
AGGACGACGCCAAAGGCGGTGAGCACATATTTGAGGAAACATGAAACATT
GCCATCACTTATTAAGCGATATGCTGCTCGTTCAACCGTGGCATTGAACG
TTGGCGCCAAATTGAATGCAACTTCGCAAACTCTATCCAATGCCCACGTT
CCAATGCCCACGTCTTTTCTCTTGTTTCCGCGTTGCCGTCTCCCCTGCAT
AGCCAACACTTGGTATATGAAGGCCGGAAAGATGGTTGACCGCGGCACAG
AGGGAGCCATGAAGATGACAGACGGAGGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig9843:2678..7656+

>mRNA_L-digitata_M_contig9843.1.1 ID=mRNA_L-digitata_M_contig9843.1.1|Name=mRNA_L-digitata_M_contig9843.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=495bp|location=Sequence derived from alignment at L-digitata_M_contig9843:2678..7656+ (Laminaria digitata LdigPH10_18mv male)
ATGCGTTCTCCGTCGAGAAGCCAAAGGTCACCGCCGGCCTCACTTCGGAG
CAACGCGACGAAAAGGAAGATTGCGGACAGCCTCGATTGGTCGGTCGCAG
GACCAGAAAGCAAACAGGAAACTAGACTATGTCGAAGAATCGAACGACTA
CGGCAAATTCACGATCGAAGAGGAAGGACTGAAGGAGGAGGAGGAGAAGG
AAGAGGAGGAGGCGGAAGAGGAAGAAGAGACGCCAACACTTGGTATATGA
AGGCCGGAAAGATGGTTGACCGCGGCACAGAGGGAGCCATGAAGATGACA
GACGGAGGAGCCTCCAGGGAGGCGAGGAACGGCCTCACGGAGAAGGAGTG
GGCGGACCCCGAAACACCCGACCACATAGCCCGAAAGAAGAAGAGGCTAG
AGGACGACGCCAAAGGCGCCAACACTTGGTATATGAAGGCCGGAAAGATG
GTTGACCGCGGCACAGAGGGAGCCATGAAGATGACAGACGGAGGA
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