mRNA_L-digitata_M_contig98361.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig98361.1.1
Unique NamemRNA_L-digitata_M_contig98361.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig98361.1.1 vs. uniprot
Match: A0A6H5J5Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Y0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.440e-27
Identity = 54/106 (50.94%), Postives = 74/106 (69.81%), Query Frame = 1 
Query:    4 VFARGYRLKDNEWNVTDVSLDHVNCVGQSGEKQKRASRKAVKEEAAAFVNANHKITSPELVKTLKESCGVTMVDRTANRMKFDILQRGEELVKNEYKALDSYLTTL 321
            V ARG +  D  W VT+V LDHV C GQ+  K++R +R+ V+ EAAA V+ANH+IT P LVKTLK + GV + +RTA+RM+ DIL +G++ +  EY+ L SY   L
Sbjct:  193 VLARGCKQTDGTWKVTEVVLDHVACTGQASNKKQRINRRCVEREAAALVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYCDLL 298
[Close]
BLAST of mRNA_L-digitata_M_contig98361.1.1 vs. uniprot
Match: A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 6.130e-27
Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    4 VFARGYRLKDNEWNVTDVSLDHVNCVGQSGEKQKRASRKAVKEEAAAFVNANHKITSPELVKTLKESCGVTMVDRTANRMKFDILQRGEELVKNEYKALDSYLTTL 321
            V AR  +L D  W VT+V LDHV C GQ+G K++R +R+ V+EEAAA V++N  IT P L KTLK + GV + +RTA RM+ DIL +G++ +  EY+ L SY   L
Sbjct:   85 VLARACKLHDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLL 190
[Close]
BLAST of mRNA_L-digitata_M_contig98361.1.1 vs. uniprot
Match: D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.150e-26
Identity = 52/101 (51.49%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    4 VFARGYRLKDNEWNVTDVSLDHVNCVGQSGEKQKRASRKAVKEEAAAFVNANHKITSPELVKTLKESCGVTMVDRTANRMKFDILQRGEELVKNEYKALDS 306
            V ARG +  D  W VT+V LDHV C GQ+G K++R +R+ V+ EAAA V+ANH IT P LVKTLK + GV + +R+A+RM+ DIL +G++ +  EY+ L S
Sbjct:   39 VRARGCKQTDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEGEAAALVSANHSITCPSLVKTLKATSGVDVSERSASRMRADILGKGKDAIAKEYQLLQS 139
[Close]
BLAST of mRNA_L-digitata_M_contig98361.1.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.040e-25
Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    4 VFARGYRLKDNEWNVTDVSLDHVNCVGQSGEKQKRASRKAVKEEAAAFVNANHKITSPELVKTLKESCGVTMVDRTANRMKFDILQRGEELVKNEYKALDSYLTTL 321
            V AR  +L D  W VT+V LDHV C GQ+G K++R +R+ V+EEAAA V++N  IT P L KTLK + GV + +RTA RM+ DIL +G++ +  EY+ L SY   L
Sbjct:   85 VLARACKLHDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLL 190
[Close]
BLAST of mRNA_L-digitata_M_contig98361.1.1 vs. uniprot
Match: A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 5.160e-25
Identity = 51/106 (48.11%), Postives = 71/106 (66.98%), Query Frame = 1 
Query:    4 VFARGYRLKDNEWNVTDVSLDHVNCVGQSGEKQKRASRKAVKEEAAAFVNANHKITSPELVKTLKESCGVTMVDRTANRMKFDILQRGEELVKNEYKALDSYLTTL 321
            V ARG +  D  W VT+  LDHV C GQ+G K++  +R+ V+++AAA V+ANH IT P LVKTLK + GV + +RTA RM+ DIL +G + +  EY+ L +Y   L
Sbjct:   39 VRARGCKQTDGTWKVTEAVLDHVACTGQAGNKKQGINRRCVEKQAAALVSANHSITCPSLVKTLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLLQNYCDLL 144
[Close]
BLAST of mRNA_L-digitata_M_contig98361.1.1 vs. uniprot
Match: A0A6H5L768_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L768_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 5.190e-24
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:    4 VFARGYRLKDNEWNVTDVSLDHVNCVGQSGEKQKRASRKAVKEEAAAFVNANHKITSPELVKTLKESCGVTMVDRTANRMKFDILQRGEELVKNEYKALDSY 309
            V ARG +  D  W V DV LDHV   GQ+G K++R +R+ V+ EA   V+ANH+IT P LVKTLK + GV + +RTA+RM+ DIL +G++ +  EY+ L SY
Sbjct:   36 VRARGCKQTDGTWKVMDVVLDHVARTGQAGNKKQRINRRCVEGEATGLVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSY 137
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98361.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5J5Y0_9PHAE2.440e-2750.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JX21_9PHAE6.130e-2750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZQ7_ECTSI1.150e-2651.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4I0_9PHAE5.040e-2550.00SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KQC0_9PHAE5.160e-2548.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L768_9PHAE5.190e-2450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98361contigL-digitata_M_contig98361:594..917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog65071.PYU1_T015303
Model size324
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000436
EggNOG OGs2EVC3@1|root,2SXCD@2759|Eukaryota,1MJUK@121069|Pythiales
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408640.7302608-CDS-L-digitata_M_contig98361:593..9171682408640.7302608-CDS-L-digitata_M_contig98361:593..917Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig98361 594..917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98361.1.1prot_L-digitata_M_contig98361.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig98361 594..917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig98361.1.1

>prot_L-digitata_M_contig98361.1.1 ID=prot_L-digitata_M_contig98361.1.1|Name=mRNA_L-digitata_M_contig98361.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=108bp
LVFARGYRLKDNEWNVTDVSLDHVNCVGQSGEKQKRASRKAVKEEAAAFV
NANHKITSPELVKTLKESCGVTMVDRTANRMKFDILQRGEELVKNEYKAL
DSYLTTLA
back to top

mRNA from alignment at L-digitata_M_contig98361:594..917+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig98361.1.1 ID=mRNA_L-digitata_M_contig98361.1.1|Name=mRNA_L-digitata_M_contig98361.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=324bp|location=Sequence derived from alignment at L-digitata_M_contig98361:594..917+ (Laminaria digitata LdigPH10_18mv male)
TTGGTTTTCGCGCGTGGTTACAGGCTAAAGGATAACGAGTGGAACGTCAC
GGATGTGAGTTTAGATCACGTCAATTGCGTCGGCCAGTCGGGCGAGAAGC
AGAAGAGGGCTAGCCGGAAAGCTGTGAAGGAAGAGGCTGCGGCGTTCGTG
AATGCCAACCACAAGATCACGTCACCGGAGCTGGTCAAGACTCTCAAGGA
GAGTTGCGGCGTCACCATGGTTGACCGGACGGCGAACCGCATGAAGTTCG
ACATCTTGCAGCGCGGGGAGGAATTGGTGAAGAACGAGTACAAGGCGCTG
GACAGCTACCTCACCACCCTCGCA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig98361:594..917+

>mRNA_L-digitata_M_contig98361.1.1 ID=mRNA_L-digitata_M_contig98361.1.1|Name=mRNA_L-digitata_M_contig98361.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=324bp|location=Sequence derived from alignment at L-digitata_M_contig98361:594..917+ (Laminaria digitata LdigPH10_18mv male)
TTGGTTTTCGCGCGTGGTTACAGGCTAAAGGATAACGAGTGGAACGTCAC
GGATGTGAGTTTAGATCACGTCAATTGCGTCGGCCAGTCGGGCGAGAAGC
AGAAGAGGGCTAGCCGGAAAGCTGTGAAGGAAGAGGCTGCGGCGTTCGTG
AATGCCAACCACAAGATCACGTCACCGGAGCTGGTCAAGACTCTCAAGGA
GAGTTGCGGCGTCACCATGGTTGACCGGACGGCGAACCGCATGAAGTTCG
ACATCTTGCAGCGCGGGGAGGAATTGGTGAAGAACGAGTACAAGGCGCTG
GACAGCTACCTCACCACCCTCGCA
back to top