mRNA_L-digitata_M_contig9811.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig9811.1.1
Unique NamemRNA_L-digitata_M_contig9811.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig9811.1.1 vs. uniprot
Match: A0A6H5JIY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.430e-23
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 VEVKTKKLKKLWSKYQTAHREIKDIQEEFQQERSDMLDTIRELTRQLKLKEV 156
            VEVKTKKLKKLWSKYQTAHREIKDIQEEFQQERSDMLDTIRELTRQLKLKEV
Sbjct:   29 VEVKTKKLKKLWSKYQTAHREIKDIQEEFQQERSDMLDTIRELTRQLKLKEV 80
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BLAST of mRNA_L-digitata_M_contig9811.1.1 vs. uniprot
Match: A0A812S951_SYMMI (Kinesin-like protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S951_SYMMI)

HSP 1 Score: 77.8 bits (190), Expect = 2.430e-15
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 VEVKTKKLKKLWSKYQTAHREIKDIQEEFQQERSDMLDTIRELTRQLKLKEV 156
            VEVKTKKLKKLWSKYQ A  E +D+QEEFQ ER+DMLDTIRELTR LKLK++
Sbjct:  506 VEVKTKKLKKLWSKYQAAVSETQDLQEEFQTERTDMLDTIRELTRNLKLKDM 557
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BLAST of mRNA_L-digitata_M_contig9811.1.1 vs. uniprot
Match: A0A2R5GCR8_9STRA (Kinesin-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCR8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.960e-14
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 VEVKTKKLKKLWSKYQTAHREIKDIQEEFQQERSDMLDTIRELTRQLKLKEV 156
            VEVKTKKLKKLW KYQ    E+KD+++ FQQER DML TIRELTRQ+KLKE+
Sbjct:  556 VEVKTKKLKKLWQKYQGCKTEVKDLEQSFQQEREDMLHTIRELTRQVKLKEL 607
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BLAST of mRNA_L-digitata_M_contig9811.1.1 vs. uniprot
Match: A0A7S0XE10_9STRA (Kinesin-like protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XE10_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.010e-14
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 VEVKTKKLKKLWSKYQTAHREIKDIQEEFQQERSDMLDTIRELTRQLKLKEV 156
            V+VKT KLKKLW+KYQ A RE KD+QEEFQ ER++ LDTIRELTRQ+KLK++
Sbjct:  341 VDVKTAKLKKLWAKYQAALRETKDLQEEFQTERTEFLDTIRELTRQVKLKDL 392
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BLAST of mRNA_L-digitata_M_contig9811.1.1 vs. uniprot
Match: A0A7S1TWQ3_9STRA (Kinesin-like protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWQ3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.920e-13
Identity = 34/52 (65.38%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 VEVKTKKLKKLWSKYQTAHREIKDIQEEFQQERSDMLDTIRELTRQLKLKEV 156
            V+VKT+KLKKLW+KYQ A  EI+D+++EFQ+ER DMLDTIR+LT+Q++LK++
Sbjct:  538 VDVKTRKLKKLWAKYQAATSEIRDLEQEFQREREDMLDTIRDLTKQVRLKDL 589
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BLAST of mRNA_L-digitata_M_contig9811.1.1 vs. uniprot
Match: A0A835YNE8_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNE8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.710e-13
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 VEVKTKKLKKLWSKYQTAHREIKDIQEEFQQERSDMLDTIRELTRQLKLKEV 156
            VEVKT+KLKKLW KYQ A  E+ DIQ EFQ ER D+LD IR+L+RQLKLK++
Sbjct:  531 VEVKTRKLKKLWGKYQAAQAEVADIQAEFQGEREDLLDAIRQLSRQLKLKDL 582
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BLAST of mRNA_L-digitata_M_contig9811.1.1 vs. uniprot
Match: A0A7S2K012_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K012_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.660e-13
Identity = 35/52 (67.31%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 VEVKTKKLKKLWSKYQTAHREIKDIQEEFQQERSDMLDTIRELTRQLKLKEV 156
            V+ KTKK++KLW+K++ +  EIKD+Q EFQ ER+DML+TIRELTRQLKLKE+
Sbjct:  135 VKAKTKKIEKLWTKFRQSKTEIKDLQSEFQAERNDMLETIRELTRQLKLKEL 186
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BLAST of mRNA_L-digitata_M_contig9811.1.1 vs. uniprot
Match: A0A7S3SKQ2_9SPIT (Kinesin-like protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SKQ2_9SPIT)

HSP 1 Score: 70.5 bits (171), Expect = 9.150e-13
Identity = 35/52 (67.31%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 VEVKTKKLKKLWSKYQTAHREIKDIQEEFQQERSDMLDTIRELTRQLKLKEV 156
            VE KTKKLKKLWSKY+ A  EIKD+Q+EF +E+ D+L++IREL+RQLKLK++
Sbjct:  582 VEGKTKKLKKLWSKYKAAQAEIKDVQDEFNREKEDILESIRELSRQLKLKQL 633
[Close]
BLAST of mRNA_L-digitata_M_contig9811.1.1 vs. uniprot
Match: A0A397EIP7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EIP7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.180e-12
Identity = 35/52 (67.31%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 VEVKTKKLKKLWSKYQTAHREIKDIQEEFQQERSDMLDTIRELTRQLKLKEV 156
            V+VKTKKLKKLW+K++ A  EI+D++ EFQ E+ DML+TIRELTRQLK+K+V
Sbjct:  204 VDVKTKKLKKLWAKHKAASTEIEDLRAEFQTEKEDMLETIRELTRQLKIKQV 255
[Close]
BLAST of mRNA_L-digitata_M_contig9811.1.1 vs. uniprot
Match: W4GGS9_9STRA (Kinesin-like protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGS9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.250e-12
Identity = 35/52 (67.31%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 VEVKTKKLKKLWSKYQTAHREIKDIQEEFQQERSDMLDTIRELTRQLKLKEV 156
            V+VKTKKLKKLW+K++ A  EI+D++ EFQ E+ DML+TIRELTRQLK+K+V
Sbjct:  550 VDVKTKKLKKLWAKHKAASTEIEDLRAEFQTEKEDMLETIRELTRQLKIKQV 601
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9811.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIY8_9PHAE1.430e-23100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812S951_SYMMI2.430e-1578.85Kinesin-like protein n=1 Tax=Symbiodinium microadr... [more]
A0A2R5GCR8_9STRA2.960e-1473.08Kinesin-like protein n=1 Tax=Hondaea fermentalgian... [more]
A0A7S0XE10_9STRA4.010e-1473.08Kinesin-like protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S1TWQ3_9STRA1.920e-1365.38Kinesin-like protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835YNE8_9STRA6.710e-1369.23Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2K012_9STRA7.660e-1367.31Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3SKQ2_9SPIT9.150e-1367.31Kinesin-like protein n=1 Tax=Strombidinopsis acumi... [more]
A0A397EIP7_9STRA1.180e-1267.31Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4GGS9_9STRA1.250e-1267.31Kinesin-like protein n=10 Tax=Aphanomyces astaci T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9811contigL-digitata_M_contig9811:8908..9081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog42099.EPrPV00000023297
PFAMsKinesin
Model size174
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.84e-13
EggNOG OGsCOG5059@1|root,KOG4280@2759|Eukaryota,1MGFH@121069|Pythiales
Descriptionkinesin. Source PGD
Cds size174
COG categoryZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408638.073969-CDS-L-digitata_M_contig9811:8907..90811682408638.073969-CDS-L-digitata_M_contig9811:8907..9081Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9811 8908..9081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9811.1.1prot_L-digitata_M_contig9811.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig9811 8908..9081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig9811.1.1

>prot_L-digitata_M_contig9811.1.1 ID=prot_L-digitata_M_contig9811.1.1|Name=mRNA_L-digitata_M_contig9811.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=58bp
VEVKTKKLKKLWSKYQTAHREIKDIQEEFQQERSDMLDTIRELTRQLKLK
EVRPACP*
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mRNA from alignment at L-digitata_M_contig9811:8908..9081-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig9811.1.1 ID=mRNA_L-digitata_M_contig9811.1.1|Name=mRNA_L-digitata_M_contig9811.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=174bp|location=Sequence derived from alignment at L-digitata_M_contig9811:8908..9081- (Laminaria digitata LdigPH10_18mv male)
GTGGAGGTGAAGACGAAGAAGCTCAAGAAGCTTTGGAGCAAGTACCAGAC
GGCTCACCGCGAAATCAAGGACATCCAGGAGGAGTTCCAGCAGGAGAGGT
CTGACATGCTCGACACCATCAGAGAACTTACCAGGCAGCTCAAGCTCAAG
GAGGTTCGTCCTGCATGCCCTTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig9811:8908..9081-

>mRNA_L-digitata_M_contig9811.1.1 ID=mRNA_L-digitata_M_contig9811.1.1|Name=mRNA_L-digitata_M_contig9811.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=174bp|location=Sequence derived from alignment at L-digitata_M_contig9811:8908..9081- (Laminaria digitata LdigPH10_18mv male)
GTGGAGGTGAAGACGAAGAAGCTCAAGAAGCTTTGGAGCAAGTACCAGAC
GGCTCACCGCGAAATCAAGGACATCCAGGAGGAGTTCCAGCAGGAGAGGT
CTGACATGCTCGACACCATCAGAGAACTTACCAGGCAGCTCAAGCTCAAG
GAGGTTCGTCCTGCATGCCCTTAA
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