mRNA_L-digitata_M_contig98011.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig98011.1.1
Unique NamemRNA_L-digitata_M_contig98011.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig98011.1.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.250e-27
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 PFGVGMAWRTLITAGAMRQWGPRLEEVNREVRQYGVAVPGGVEHIGLRARTRHETGNWLVLTDCPNDFHAVKRTAVLQEVANCVPALTPSVAKCY 285
            P  +GM WR LI AG +R+W P+LEE+ RE  Q+GVAV GGVE + + A+  H+TG+W+V TDC N F+  KRTA++ + A  VP L   +A+CY
Sbjct:   81 PVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCY 175
[Close]
BLAST of mRNA_L-digitata_M_contig98011.1.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.120e-26
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 PFGVGMAWRTLITAGAMRQWGPRLEEVNREVRQYGVAVPGGVEHIGLRARTRHETGNWLVLTDCPNDFHAVKRTAVLQEVANCVPALTPSVAKCY 285
            P  +GM WR LI AG +RQW P+LEE+ RE  Q+GVAV GGVE + + A+  H+TGNW++ TDC N F+  KRTA++ + A  +P L   +A+CY
Sbjct:  619 PVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCY 713
[Close]
BLAST of mRNA_L-digitata_M_contig98011.1.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.510e-26
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 PFGVGMAWRTLITAGAMRQWGPRLEEVNREVRQYGVAVPGGVEHIGLRARTRHETGNWLVLTDCPNDFHAVKRTAVLQEVANCVPALTPSVAKCY 285
            P  +GM WR LI AG +R+W P+LEE+ RE  Q+GVAV GGVE + + A+  H+TG+W+V TDC N F+  KRTA++ + A  VP L   +A+CY
Sbjct:  171 PVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCY 265
[Close]
BLAST of mRNA_L-digitata_M_contig98011.1.1 vs. uniprot
Match: A0A6H5KDD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD0_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 6.210e-26
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 PFGVGMAWRTLITAGAMRQWGPRLEEVNREVRQYGVAVPGGVEHIGLRARTRHETGNWLVLTDCPNDFHAVKRTAVLQEVANCVPALTPSVAKCY 285
            P  +GM WR LI AG +R+W P+LEE+ RE  Q+GVAV GGVE + + A+  H+TG+W+V TDC N F+  KRTA++ + A  VP L   +A+CY
Sbjct:   37 PVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAKAAKSVPNLVGYIARCY 131
[Close]
BLAST of mRNA_L-digitata_M_contig98011.1.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 9.220e-26
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 PFGVGMAWRTLITAGAMRQWGPRLEEVNREVRQYGVAVPGGVEHIGLRARTRHETGNWLVLTDCPNDFHAVKRTAVLQEVANCVPALTPSVAKCY 285
            P  +GM WR LI AG +R+W P+LEE+ RE  Q+GVAV GGVE + + A+  H+TG+W+V TDC N F+  KRTA++ + A  VP L   +A+CY
Sbjct:   80 PVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCY 174
[Close]
BLAST of mRNA_L-digitata_M_contig98011.1.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 9.600e-26
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 PFGVGMAWRTLITAGAMRQWGPRLEEVNREVRQYGVAVPGGVEHIGLRARTRHETGNWLVLTDCPNDFHAVKRTAVLQEVANCVPALTPSVAKCY 285
            P  +GM WR LI AG +R+W P+LEE+ RE  Q+GVAV GGVE + + A+  H+TG+W+V TDC N F+  KRTA++ + A  VP L   +A+CY
Sbjct:  456 PVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCY 550
[Close]
BLAST of mRNA_L-digitata_M_contig98011.1.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 9.630e-26
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 PFGVGMAWRTLITAGAMRQWGPRLEEVNREVRQYGVAVPGGVEHIGLRARTRHETGNWLVLTDCPNDFHAVKRTAVLQEVANCVPALTPSVAKCY 285
            P  +GM WR LI AG +R+W P+LEE+ RE  Q+GVAV GGVE + + A+  H+TG+W+V TDC N F+  KRTA++ + A  VP L   +A+CY
Sbjct:  470 PVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCY 564
[Close]
BLAST of mRNA_L-digitata_M_contig98011.1.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 9.760e-26
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 PFGVGMAWRTLITAGAMRQWGPRLEEVNREVRQYGVAVPGGVEHIGLRARTRHETGNWLVLTDCPNDFHAVKRTAVLQEVANCVPALTPSVAKCY 285
            P  +GM WR LI AG +R+W P+LEE+ RE  Q+GVAV GGVE + + A+  H+TG+W+V TDC N F+  KRTA++ + A  VP L   +A+CY
Sbjct:  449 PVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCY 543
[Close]
BLAST of mRNA_L-digitata_M_contig98011.1.1 vs. uniprot
Match: A0A6H5KJS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS3_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.310e-25
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:    1 PFGVGMAWRTLITAGAMRQWGPRLEEVNREVRQYGVAVPGGVEHIGLRARTRHETGNWLVLTDCPNDFHAVKRTAVLQEVANCVPALTPSVAKCY 285
            P  +GM WR LI AG +R+W P+LEE+ RE  Q+GVAV GGVE + + A+  H+TG W++ TDC N F+  KRTA++ + A  VP L   +A+CY
Sbjct:  654 PVFIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGQWVIQTDCSNTFNTGKRTAIMAQAATSVPDLVGYIARCY 748
[Close]
BLAST of mRNA_L-digitata_M_contig98011.1.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.780e-25
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 PFGVGMAWRTLITAGAMRQWGPRLEEVNREVRQYGVAVPGGVEHIGLRARTRHETGNWLVLTDCPNDFHAVKRTAVLQEVANCVPALTPSVAKCY 285
            P  +GM WR LI AG +R+W P+LEE+ RE  Q+GVAV GGVE + + A+  H+TG+W+V TDC N F+  KRTA++ + A  VP L   +A+CY
Sbjct:  399 PVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKNVPDLVGYIARCY 493
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98011.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5L4Y4_9PHAE2.250e-2750.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JH58_9PHAE1.120e-2650.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KR59_9PHAE3.510e-2650.53Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KDD0_9PHAE6.210e-2650.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE9.220e-2650.53Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KA96_9PHAE9.600e-2650.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI32_9PHAE9.630e-2650.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE9.760e-2650.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KJS3_9PHAE1.310e-2549.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAK8_9PHAE1.780e-2550.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98011contigL-digitata_M_contig98011:187..474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size288
Hectar predicted targeting categoryother localisation
Exons1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408637.2993047-CDS-L-digitata_M_contig98011:186..4591682408637.2993047-CDS-L-digitata_M_contig98011:186..459Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig98011 187..459 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408637.3123808-UTR-L-digitata_M_contig98011:459..4741682408637.3123808-UTR-L-digitata_M_contig98011:459..474Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig98011 460..474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98011.1.1prot_L-digitata_M_contig98011.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig98011 187..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig98011.1.1

>prot_L-digitata_M_contig98011.1.1 ID=prot_L-digitata_M_contig98011.1.1|Name=mRNA_L-digitata_M_contig98011.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=91bp
MAWRTLITAGAMRQWGPRLEEVNREVRQYGVAVPGGVEHIGLRARTRHET
GNWLVLTDCPNDFHAVKRTAVLQEVANCVPALTPSVAKCYG
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mRNA from alignment at L-digitata_M_contig98011:187..474-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig98011.1.1 ID=mRNA_L-digitata_M_contig98011.1.1|Name=mRNA_L-digitata_M_contig98011.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=288bp|location=Sequence derived from alignment at L-digitata_M_contig98011:187..474- (Laminaria digitata LdigPH10_18mv male)
CCGTTTGGCGTGGGCATGGCATGGAGGACGCTCATCACCGCAGGGGCTAT
GCGACAGTGGGGGCCGCGGTTGGAGGAGGTAAACCGAGAGGTGAGGCAGT
ATGGGGTCGCCGTACCGGGCGGAGTGGAGCACATAGGATTAAGGGCTAGG
ACGCGACACGAGACGGGCAACTGGCTCGTTCTCACGGACTGCCCCAACGA
TTTCCACGCCGTCAAAAGGACGGCGGTGCTACAAGAGGTGGCAAACTGCG
TGCCAGCGCTCACACCGTCAGTGGCCAAGTGCTACGGT
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Coding sequence (CDS) from alignment at L-digitata_M_contig98011:187..474-

>mRNA_L-digitata_M_contig98011.1.1 ID=mRNA_L-digitata_M_contig98011.1.1|Name=mRNA_L-digitata_M_contig98011.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=273bp|location=Sequence derived from alignment at L-digitata_M_contig98011:187..474- (Laminaria digitata LdigPH10_18mv male)
ATGGCATGGAGGACGCTCATCACCGCAGGGGCTATGCGACAGTGGGGGCC
GCGGTTGGAGGAGGTAAACCGAGAGGTGAGGCAGTATGGGGTCGCCGTAC
CGGGCGGAGTGGAGCACATAGGATTAAGGGCTAGGACGCGACACGAGACG
GGCAACTGGCTCGTTCTCACGGACTGCCCCAACGATTTCCACGCCGTCAA
AAGGACGGCGGTGCTACAAGAGGTGGCAAACTGCGTGCCAGCGCTCACAC
CGTCAGTGGCCAAGTGCTACGGT
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