mRNA_L-digitata_M_contig9768.4.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig9768.4.1
Unique NamemRNA_L-digitata_M_contig9768.4.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig9768.4.1 vs. uniprot
Match: D7FW87_ECTSI (Flagellar associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW87_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.870e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 QVKEELMVSNDVMRLEVKRLRDTLNGAADEVFSLENRRQQLAMSMKERKAEIQV 162
            Q+KEELMVSNDVMRLEVKRLRDTLNGAADEVFSLENRRQQLAMSMKERKAEIQV
Sbjct:  659 QMKEELMVSNDVMRLEVKRLRDTLNGAADEVFSLENRRQQLAMSMKERKAEIQV 712
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BLAST of mRNA_L-digitata_M_contig9768.4.1 vs. uniprot
Match: A0A7S2USL3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USL3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.610e-15
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 QVKEELMVSNDVMRLEVKRLRDTLNGAADEVFSLENRRQQLAMSMKERKAEIQV 162
            Q +EELMV  DVMRLE+KRL++TLN  ADEVFSLENRR QLAMSM+ERK EIQV
Sbjct:  212 QQQEELMVQQDVMRLEIKRLQETLNQWADEVFSLENRRNQLAMSMEERKHEIQV 265
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BLAST of mRNA_L-digitata_M_contig9768.4.1 vs. uniprot
Match: A0A7S2HCT2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HCT2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.020e-12
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    7 KEELMVSNDVMRLEVKRLRDTLNGAADEVFSLENRRQQLAMSMKERKAEIQV 162
            KE  MV NDVMRLEVKR+RD L   AD+VF+LENRRQQL +SM+ERK EI V
Sbjct:  103 KERCMVENDVMRLEVKRIRDVLTSKADQVFTLENRRQQLELSMQERKQEIAV 154
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BLAST of mRNA_L-digitata_M_contig9768.4.1 vs. uniprot
Match: C1EG89_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EG89_MICCC)

HSP 1 Score: 69.3 bits (168), Expect = 2.660e-12
Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    7 KEELMVSNDVMRLEVKRLRDTLNGAADEVFSLENRRQQLAMSMKERKAEIQV 162
            KE+ MV++DV++LEVKRLRD LN  ADEVFSLENR+ QL +SM+ERK E++V
Sbjct:  556 KEDRMVAHDVLKLEVKRLRDQLNARADEVFSLENRKMQLQLSMEERKHEVEV 607
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BLAST of mRNA_L-digitata_M_contig9768.4.1 vs. uniprot
Match: A0A8J2SE05_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SE05_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.270e-11
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   10 EELMVSNDVMRLEVKRLRDTLNGAADEVFSLENRRQQLAMSMKERKAEIQV 162
            +E MV+NDVMRLE+KRLRD L+  AD+VF+LENR+QQL +SM ERK EI V
Sbjct:  577 QEAMVANDVMRLEIKRLRDQLSERADKVFTLENRKQQLKLSMAERKKEIAV 627
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BLAST of mRNA_L-digitata_M_contig9768.4.1 vs. uniprot
Match: A0A7S2NH67_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NH67_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 1.730e-11
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    7 KEELMVSNDVMRLEVKRLRDTLNGAADEVFSLENRRQQLAMSMKERKAEIQV 162
            KEE MV +DV++LEVKRLR+ LNG ADEVF L+NR+ QL MSM+ER+ EI+V
Sbjct:  548 KEESMVGHDVLKLEVKRLREQLNGKADEVFGLQNRKFQLQMSMEERQQEIKV 599
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BLAST of mRNA_L-digitata_M_contig9768.4.1 vs. uniprot
Match: A0A7S4D4Q2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4Q2_HETAK)

HSP 1 Score: 67.0 bits (162), Expect = 1.740e-11
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   10 EELMVSNDVMRLEVKRLRDTLNGAADEVFSLENRRQQLAMSMKERKAEIQV 162
            EE+MV NDVMRLE++RLR  L   AD VF LENRRQQL MSM+ERK E+ V
Sbjct:  546 EEVMVQNDVMRLEIQRLRGALTAKADAVFGLENRRQQLTMSMEERKHEVAV 596
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BLAST of mRNA_L-digitata_M_contig9768.4.1 vs. uniprot
Match: A0A7S0RYR9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RYR9_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 6.020e-11
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    7 KEELMVSNDVMRLEVKRLRDTLNGAADEVFSLENRRQQLAMSMKERKAEIQV 162
            KE+ MV +DVM+LEVKRLRD L   ADEVFSLENRR QL MSM+ER+ E++V
Sbjct:  235 KEKAMVDHDVMKLEVKRLRDILALHADEVFSLENRRFQLKMSMEERRQEVEV 286
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BLAST of mRNA_L-digitata_M_contig9768.4.1 vs. uniprot
Match: F0YAT9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAT9_AURAN)

HSP 1 Score: 65.5 bits (158), Expect = 6.050e-11
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   19 MVSNDVMRLEVKRLRDTLNGAADEVFSLENRRQQLAMSMKERKAEIQV 162
            MV ND+MRLE+KRLRD L+  AD+VF+LENR+QQL +SM+ERK EI V
Sbjct:  558 MVQNDIMRLELKRLRDALSQRADKVFTLENRKQQLKLSMQERKKEIAV 605
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BLAST of mRNA_L-digitata_M_contig9768.4.1 vs. uniprot
Match: A0A150GM09_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GM09_GONPE)

HSP 1 Score: 65.5 bits (158), Expect = 6.060e-11
Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 QVKEELMVSNDVMRLEVKRLRDTLNGAADEVFSLENRRQQLAMSMKERKAEIQV 162
            + +E+ +V +DV+ LEVKRLRD L+  ADEVFSLENR+ QLA+SM+ERK E++V
Sbjct:  562 EAREKALVDHDVLALEVKRLRDILSAHADEVFSLENRKAQLALSMEERKQEVEV 615
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9768.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW87_ECTSI1.870e-2298.15Flagellar associated protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2USL3_9STRA6.610e-1577.78Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2HCT2_9STRA1.020e-1271.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
C1EG89_MICCC2.660e-1267.31Uncharacterized protein n=2 Tax=Micromonas TaxID=3... [more]
A0A8J2SE05_9STRA1.270e-1168.63Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2NH67_9EUKA1.730e-1167.31Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S4D4Q2_HETAK1.740e-1168.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0RYR9_9CHLO6.020e-1169.23Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
F0YAT9_AURAN6.050e-1168.75Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A150GM09_GONPE6.060e-1161.11Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9768contigL-digitata_M_contig9768:8596..8778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FW87
Preferred nameCCDC39
Model size183
Max annot lvl2759|Eukaryota
KEGG koko:K13675
KEGG ReactionR09316
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001539,GO:0001578,GO:0001889,GO:0001947,GO:0002009,GO:0003007,GO:0003143,GO:0003341,GO:0003351,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0030323,GO:0030324,GO:0031016,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0034622,GO:0035050,GO:0035082,GO:0035239,GO:0035295,GO:0035469,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048562,GO:0048565,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048732,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0051179,GO:0051270,GO:0051674,GO:0055123,GO:0060271,GO:0060285,GO:0060287,GO:0060429,GO:0060541,GO:0060562,GO:0060632,GO:0061008,GO:0061371,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0071907,GO:0071910,GO:0072359,GO:0097014,GO:0097722,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons1
Evalue1.2e-20
EggNOG OGs2C32D@1|root,2QS0D@2759|Eukaryota
Descriptioninner dynein arm assembly
Cds size165
COG categoryS
CAZyGT31
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408633.5200164-CDS-L-digitata_M_contig9768:8595..87601682408633.5200164-CDS-L-digitata_M_contig9768:8595..8760Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9768 8596..8760 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408633.5368578-UTR-L-digitata_M_contig9768:8760..87781682408633.5368578-UTR-L-digitata_M_contig9768:8760..8778Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig9768 8761..8778 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9768.4.1prot_L-digitata_M_contig9768.4.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig9768 8596..8760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig9768.4.1

>prot_L-digitata_M_contig9768.4.1 ID=prot_L-digitata_M_contig9768.4.1|Name=mRNA_L-digitata_M_contig9768.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=55bp
MVSNDVMRLEVKRLRDTLNGAADEVFSLENRRQQLAMSMKERKAEIQVIL
TTAV*
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mRNA from alignment at L-digitata_M_contig9768:8596..8778-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig9768.4.1 ID=mRNA_L-digitata_M_contig9768.4.1|Name=mRNA_L-digitata_M_contig9768.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=183bp|location=Sequence derived from alignment at L-digitata_M_contig9768:8596..8778- (Laminaria digitata LdigPH10_18mv male)
CAGGTCAAGGAAGAGCTGATGGTGTCCAACGACGTCATGCGGCTGGAGGT
TAAGCGGCTTAGGGACACGCTCAACGGCGCGGCCGACGAAGTTTTCAGCC
TCGAAAACAGGCGGCAGCAGTTGGCCATGAGCATGAAAGAACGCAAGGCT
GAAATCCAGGTGATCCTAACCACTGCTGTATAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig9768:8596..8778-

>mRNA_L-digitata_M_contig9768.4.1 ID=mRNA_L-digitata_M_contig9768.4.1|Name=mRNA_L-digitata_M_contig9768.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=165bp|location=Sequence derived from alignment at L-digitata_M_contig9768:8596..8778- (Laminaria digitata LdigPH10_18mv male)
ATGGTGTCCAACGACGTCATGCGGCTGGAGGTTAAGCGGCTTAGGGACAC
GCTCAACGGCGCGGCCGACGAAGTTTTCAGCCTCGAAAACAGGCGGCAGC
AGTTGGCCATGAGCATGAAAGAACGCAAGGCTGAAATCCAGGTGATCCTA
ACCACTGCTGTATAA
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