mRNA_L-digitata_M_contig976.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig976.1.1
Unique NamemRNA_L-digitata_M_contig976.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig976.1.1 vs. uniprot
Match: D7G8B1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B1_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 1.670e-51
Identity = 113/228 (49.56%), Postives = 125/228 (54.82%), Query Frame = 1 
Query:    4 QIRICNRGKIAMKAVARVPPPVRGCASFSPDMGFVQPGSFFEFGLRFRPDPECLARCAREGWGV--------------------------------------------------------------------GGAGMIAIPMRVDVPGQALPARLVLKAR-------------------GGRAGA-AVVSFGPCFVGQSVVRRVSLRSTSLLPAKFGFVGHLTEVRTQ 423
            +IRICNRGKIAMKAVARVPP +RGC SFSPDMGFVQPGSFFEFGLRFRPDPE LARCAR+GWG+                                                                       G+IAIP+R DVPGQALPAR VL+AR                   GG  G+ AVV+FGPCFVGQSV RRVSLR+TSLLPAKFGF+G+  EV  Q
Sbjct:  874 KIRICNRGKIAMKAVARVPPSLRGCTSFSPDMGFVQPGSFFEFGLRFRPDPESLARCARDGWGILATSHSDNSSSDKDHPLSLEHNSTVAPGSEQQLLQQQGHRGSRKPGVVADGDAESSTEGSWDPCAKTADAGGIIAIPLRFDVPGQALPARAVLQARLTGSKVEVGCGDGERGEGEGGVGGSEAVVNFGPCFVGQSVTRRVSLRNTSLLPAKFGFIGNPAEVDLQ 1101
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BLAST of mRNA_L-digitata_M_contig976.1.1 vs. uniprot
Match: A0A6H5JIE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIE8_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.060e-48
Identity = 108/224 (48.21%), Postives = 120/224 (53.57%), Query Frame = 1 
Query:    1 NQIRICNRGKIAMKAVARVPPPVRGCASFSPDMGFVQPGSFFEFGLRFRPDPECLARCAREGWGV------------------------------------------------------------------GGAGMIAIPMRVDVPGQALPARLVLKAR--GGRA------------------GAAVVSFGPCFVGQSVVRRVSLRSTSLLPAKFGFVGHLTEV 414
            N+IRICNRGKIAMKAVARVPP +RGC SFSPDMGFVQPGSFFEFGLRFRPDPE LARC R+GWG+                                                                     G+IAIP+R DVPGQALPAR VL+AR  G +                     AVV+FG CFVGQSV RRVSLR+TSLL AKFGF+G+  EV
Sbjct:  831 NKIRICNRGKIAMKAVARVPPSLRGCTSFSPDMGFVQPGSFFEFGLRFRPDPESLARCVRDGWGILATPHSENSSSDKALSLERNSTVAPGSKQQLLQQQGHRGSRKPGVVTDRDAESSTEGSWDSCAKTADAGGIIAIPLRFDVPGQALPARAVLQARLTGSKVEVGCGDXXXXXXXXXXXXSEAVVNFGQCFVGQSVTRRVSLRNTSLLAAKFGFIGNPAEV 1054
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BLAST of mRNA_L-digitata_M_contig976.1.1 vs. uniprot
Match: F0Y4M8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4M8_AURAN)

HSP 1 Score: 109 bits (273), Expect = 4.140e-25
Identity = 62/139 (44.60%), Postives = 84/139 (60.43%), Query Frame = 1 
Query:   19 NRGKIAMKAVARVPPPVRGCASFSPDMGFVQPGSFFEFGLRFRPDPECLARCAREGWGVGGAGMIAIPMRVDVPGQALPARLVLKARGGRAGAA----VVSFGPCFVGQSVVRRVSLRSTSLLPAKFGFVGHLTEVRTQ 423
            NRGKIA KA+AR P   R    + PDMGFVQPG+ FE  ++FRP P  + RCA   + +   G+IA+PMR+ VP QALP    L+A+  R+  +     + +GPC+V +++   V L + S LP KFGFV    EV  Q
Sbjct:  984 NRGKIAFKAIARAPKEFREFFEYQPDMGFVQPGADFEMSIKFRPTPAVVDRCAP--YCIKDRGIIAVPMRIMVPDQALPVYYTLRAQLTRSDVSFSTTALDYGPCYVTEALSAPVVLTNESALPQKFGFVNLSAEVDVQ 1120
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BLAST of mRNA_L-digitata_M_contig976.1.1 vs. uniprot
Match: A0A7S4EB26_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EB26_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.100e-22
Identity = 60/141 (42.55%), Postives = 83/141 (58.87%), Query Frame = 1 
Query:   13 ICNRGKIAMKAVARVPPPVRGCASFSPDMGFVQPGSFFEFGLRFRPDPECLARCAREGWGVGGAGMIAIPMRVDVPGQALPARLVLKARGGRA----GAAVVSFGPCFVGQSVVRRVSLRSTSLLPAKFGFVGHLTEVRTQ 423
            I NRGKIAMK +A+VPP  +    + PDMGFVQPG+ FE G++FRP  E +   A + + +  + ++AIP+++  P Q LP    LKAR              FG C+VG+ +   ++L +TSLLP KFGFV    EV  Q
Sbjct:  915 IHNRGKIAMKCIAQVPPKYKDYIEYQPDMGFVQPGASFEMGIKFRPQHELVK--ASKPYCLEDSDVVAIPLKLKCPDQKLPVWYTLKARLTSGDINFSTKTFEFGNCYVGEGLSMPLTLTNTSLLPQKFGFVQLKDEVDVQ 1053
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BLAST of mRNA_L-digitata_M_contig976.1.1 vs. uniprot
Match: A0A7S1TZE1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZE1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.640e-22
Identity = 57/148 (38.51%), Postives = 82/148 (55.41%), Query Frame = 1 
Query:    4 QIRICNRGKIAMKAVARVPPPVRGCASFSPDMGFVQPGSFFEFGLRFRPDPECLARCAREGWGVGGAGMIAIPMRVDVPGQALPARLVLKAR--------GGRAGAAVVSFGPCFVGQSVVRRVSLRSTSLLPAKFGFVGHLTEVRTQ 423
            Q+ +CNRGKIA K +   PP + G  +FSPDMGF+QPGS F  G++F P P    R  R  W     G++A+P++V VP Q++P    L+++            GA  + FG  +V Q    R+ + + S+LP KFGFV    E+  Q
Sbjct:  673 QLVLCNRGKIAYKVLLSPPPMLDGVLAFSPDMGFIQPGSSFSVGMKFTPSPGLTRRVGRFAW--DEQGLVAVPVKVTVPDQSIPVFFTLRSQLTVGDLVLSFENGATELDFGRVYVTQGASLRMVVCNPSMLPQKFGFVDLPRELEVQ 818
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig976.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8B1_ECTSI1.670e-5149.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIE8_9PHAE2.060e-4848.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y4M8_AURAN4.140e-2544.60Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4EB26_9STRA1.100e-2242.55Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S1TZE1_9STRA3.640e-2238.51Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig976contigL-digitata_M_contig976:22059..22768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8B1
Preferred nameKIAA1751
PFAMsASH,PapD-like
Model size423
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons3
Evalue2.73e-52
EggNOG OGs2CMB2@1|root,2QPUP@2759|Eukaryota
Descriptionaxoneme assembly
Cds size423
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408632.4593503-CDS-L-digitata_M_contig976:22058..222031682408632.4593503-CDS-L-digitata_M_contig976:22058..22203Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig976 22059..22203 -
1682408632.4730544-CDS-L-digitata_M_contig976:22281..223641682408632.4730544-CDS-L-digitata_M_contig976:22281..22364Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig976 22282..22364 -
1682408632.4825308-CDS-L-digitata_M_contig976:22573..227681682408632.4825308-CDS-L-digitata_M_contig976:22573..22768Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig976 22574..22768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig976.1.1prot_L-digitata_M_contig976.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig976 22059..22768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig976.1.1

>prot_L-digitata_M_contig976.1.1 ID=prot_L-digitata_M_contig976.1.1|Name=mRNA_L-digitata_M_contig976.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=141bp
NQIRICNRGKIAMKAVARVPPPVRGCASFSPDMGFVQPGSFFEFGLRFRP
DPECLARCAREGWGVGGAGMIAIPMRVDVPGQALPARLVLKARGGRAGAA
VVSFGPCFVGQSVVRRVSLRSTSLLPAKFGFVGHLTEVRTQ
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mRNA from alignment at L-digitata_M_contig976:22059..22768-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig976.1.1 ID=mRNA_L-digitata_M_contig976.1.1|Name=mRNA_L-digitata_M_contig976.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=710bp|location=Sequence derived from alignment at L-digitata_M_contig976:22059..22768- (Laminaria digitata LdigPH10_18mv male)
AATCAGATACGAATTTGCAACAGAGGAAAAATAGCCATGAAAGCGGTGGC
TCGAGTTCCCCCCCCCGTCCGGGGTTGCGCGAGCTTCAGCCCCGACATGG
GCTTCGTACAGCCTGGATCGTTTTTCGAGTTCGGGCTTCGCTTCCGCCCG
GACCCAGAATGCCTCGCACGGTGCGCACGCGAAGGCTGGGGAGTTGTCTC
TGGACGACGACAAAGCTCAAACGTTTCAGACGCTGGAAGAGCAACACAAC
ACCAACCAACTCACCCCCCCCCCTCTCTGCGACTGGACCAGCAAGCTATC
GATGATGCGGCCCCGACGGAGGAGGAGCTAAAGAGGTCTCAGGAAAATGT
GGAGGCAACCGTTGATTTGGGGGGGGGGGGGGTACTACTCGGGAAACGTC
AGAGGGGGGGGCTGGAATGATTGCTATCCCCATGAGAGTTGATGTGCCTG
GACAGGCGTTGCCAGCCCGGTTAGTGCTGAAGGCTAGGTTGACAGGCTGG
AAGGTGGAGGTTGACTGTGGGGGCAAGGAAGGAAGCGGTGATGGTAGGGG
CGGGGCCGGGGGTAGGGGGGGCAGGGCGGGGGCGGCGGTGGTGAGCTTTG
GGCCGTGCTTTGTTGGTCAGAGTGTCGTGCGGAGGGTGTCGCTGAGGAGC
ACGAGCCTTCTCCCGGCGAAGTTCGGCTTTGTTGGGCACCTGACTGAGGT
ACGTACGCAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig976:22059..22768-

>mRNA_L-digitata_M_contig976.1.1 ID=mRNA_L-digitata_M_contig976.1.1|Name=mRNA_L-digitata_M_contig976.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=423bp|location=Sequence derived from alignment at L-digitata_M_contig976:22059..22768- (Laminaria digitata LdigPH10_18mv male)
AATCAGATACGAATTTGCAACAGAGGAAAAATAGCCATGAAAGCGGTGGC
TCGAGTTCCCCCCCCCGTCCGGGGTTGCGCGAGCTTCAGCCCCGACATGG
GCTTCGTACAGCCTGGATCGTTTTTCGAGTTCGGGCTTCGCTTCCGCCCG
GACCCAGAATGCCTCGCACGGTGCGCACGCGAAGGCTGGGGAGTTGGGGG
GGCTGGAATGATTGCTATCCCCATGAGAGTTGATGTGCCTGGACAGGCGT
TGCCAGCCCGGTTAGTGCTGAAGGCTAGGGGGGGCAGGGCGGGGGCGGCG
GTGGTGAGCTTTGGGCCGTGCTTTGTTGGTCAGAGTGTCGTGCGGAGGGT
GTCGCTGAGGAGCACGAGCCTTCTCCCGGCGAAGTTCGGCTTTGTTGGGC
ACCTGACTGAGGTACGTACGCAA
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