mRNA_L-digitata_M_contig97569.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig97569.1.1
Unique NamemRNA_L-digitata_M_contig97569.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig97569.1.1 vs. uniprot
Match: D7G1I0_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I0_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 2.170e-28
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 KVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQ 165
            +VAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQ
Sbjct:  616 QVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQ 670
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BLAST of mRNA_L-digitata_M_contig97569.1.1 vs. uniprot
Match: A0A6H5L043_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L043_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.180e-28
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 KVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQ 165
            +VAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQ
Sbjct:  626 QVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQ 680
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BLAST of mRNA_L-digitata_M_contig97569.1.1 vs. uniprot
Match: A0A7S2SQY7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY7_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.640e-23
Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 KVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQ 165
            +VAHLERSGHYLTVKDNQVVSIHPSSVLD KP W +FEEFVLTSKN++RTVT V+
Sbjct:  633 QVAHLERSGHYLTVKDNQVVSIHPSSVLDQKPPWVLFEEFVLTSKNFVRTVTAVR 687
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BLAST of mRNA_L-digitata_M_contig97569.1.1 vs. uniprot
Match: A0A7S4HFT3_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HFT3_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 1.510e-22
Identity = 40/55 (72.73%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 KVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQ 165
            +VAHLER+GHYLTVKDNQVV++HPS+VL +KP WC++ EFVLTSKNYIR VT ++
Sbjct:   76 QVAHLERTGHYLTVKDNQVVALHPSTVLQHKPEWCLYNEFVLTSKNYIRQVTDIK 130
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BLAST of mRNA_L-digitata_M_contig97569.1.1 vs. uniprot
Match: A0A6V7WL27_9BILA (Hypothetical protein n=2 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7WL27_9BILA)

HSP 1 Score: 93.6 bits (231), Expect = 1.580e-22
Identity = 40/55 (72.73%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 KVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQ 165
            +VAHLERSGHY+T+KDNQ+V++HPSSVLD+KP W ++ EFVLT+KNYIRTVT V+
Sbjct:  108 QVAHLERSGHYVTIKDNQIVNLHPSSVLDHKPEWALYNEFVLTTKNYIRTVTDVR 162
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BLAST of mRNA_L-digitata_M_contig97569.1.1 vs. uniprot
Match: A0A0M3KHY3_ANISI (OB_NTP_bind domain-containing protein n=2 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3KHY3_ANISI)

HSP 1 Score: 92.0 bits (227), Expect = 2.880e-22
Identity = 40/55 (72.73%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 KVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQ 165
            +VAHLERSGHY+TVKDNQ+V +HPS+VLD+KP W ++ EFVLT+KNYIRTVT V+
Sbjct:   69 QVAHLERSGHYITVKDNQLVQLHPSTVLDHKPEWALYNEFVLTTKNYIRTVTDVK 123
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BLAST of mRNA_L-digitata_M_contig97569.1.1 vs. uniprot
Match: A0A437AY47_CHISP (OB_NTP_bind domain-containing protein n=3 Tax=Obtectomera TaxID=104431 RepID=A0A437AY47_CHISP)

HSP 1 Score: 89.7 bits (221), Expect = 3.960e-22
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 KVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQ 165
            +VAHLER+GHYLTVKDNQVV +HPS+ LD+KP W ++ EFVLT+KNYIRTVT ++
Sbjct:    2 QVAHLERTGHYLTVKDNQVVQLHPSTCLDHKPDWVLYNEFVLTTKNYIRTVTDIK 56
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BLAST of mRNA_L-digitata_M_contig97569.1.1 vs. uniprot
Match: A0A2G9TNG8_TELCI (OB_NTP_bind domain-containing protein n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9TNG8_TELCI)

HSP 1 Score: 89.4 bits (220), Expect = 5.040e-22
Identity = 38/55 (69.09%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 KVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQ 165
            +VAHL+RSGHY+TVKDNQ+V++HPS+VLD+KP W ++ EFVLT+KN+IRTVT V+
Sbjct:   37 QVAHLQRSGHYVTVKDNQLVNLHPSTVLDHKPEWALYNEFVLTTKNFIRTVTDVR 91
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BLAST of mRNA_L-digitata_M_contig97569.1.1 vs. uniprot
Match: A0A183B398_9TREM (HA2 domain-containing protein n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183B398_9TREM)

HSP 1 Score: 92.8 bits (229), Expect = 5.320e-22
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    4 VAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQ 165
            VAHLER+GHYLTVKDNQVV +HPS+VLD+KP W ++ EFVLTSKNYIRTVT V+
Sbjct:  114 VAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTSKNYIRTVTEVK 167
[Close]
BLAST of mRNA_L-digitata_M_contig97569.1.1 vs. uniprot
Match: A0A2H2HWB8_CAEJA (OB_NTP_bind domain-containing protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2HWB8_CAEJA)

HSP 1 Score: 90.5 bits (223), Expect = 6.450e-22
Identity = 39/55 (70.91%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 KVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRTVTGVQ 165
            +VAHLERSGHY+TVKDNQ+V++HPS+VLD+KP W ++ EFVLT+KN+IRTVT V+
Sbjct:   47 QVAHLERSGHYVTVKDNQLVNLHPSTVLDHKPEWALYNEFVLTTKNFIRTVTDVR 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig97569.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1I0_ECTSI2.170e-2898.18RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5L043_9PHAE2.180e-2898.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2SQY7_9STRA5.640e-2383.64Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4HFT3_9EUKA1.510e-2272.73Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A6V7WL27_9BILA1.580e-2272.73Hypothetical protein n=2 Tax=Meloidogyne enterolob... [more]
A0A0M3KHY3_ANISI2.880e-2272.73OB_NTP_bind domain-containing protein n=2 Tax=Anis... [more]
A0A437AY47_CHISP3.960e-2270.91OB_NTP_bind domain-containing protein n=3 Tax=Obte... [more]
A0A2G9TNG8_TELCI5.040e-2269.09OB_NTP_bind domain-containing protein n=1 Tax=Tela... [more]
A0A183B398_9TREM5.320e-2277.78HA2 domain-containing protein n=1 Tax=Echinostoma ... [more]
A0A2H2HWB8_CAEJA6.450e-2270.91OB_NTP_bind domain-containing protein n=1 Tax=Caen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig97569contigL-digitata_M_contig97569:118..282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1I0
Preferred nameDHX15
PFAMsAAA_22,DEAD,HA2,Helicase_C,OB_NTP_bind
Model size165
Max annot lvl2759|Eukaryota
KEGG koko:K04615,ko:K12820,ko:K14305
KEGG TC1.l.1,9.A.14.15.1
KEGG Pathwayko03013,ko03040,ko04024,ko04080,ko04727,ko04742,ko04915,ko05032,map03013,map03040,map04024,map04080,map04727,map04742,map04915,map05032
KEGG ModuleM00427
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000375,GO:0000377,GO:0000390,GO:0000398,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000470,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005689,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009507,GO:0009526,GO:0009536,GO:0009893,GO:0009941,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019220,GO:0019222,GO:0022411,GO:0022613,GO:0023051,GO:0023056,GO:0030490,GO:0030554,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0032872,GO:0032874,GO:0032984,GO:0032988,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042273,GO:0042274,GO:0042325,GO:0042327,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043410,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045937,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070302,GO:0070304,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1900744,GO:1900745,GO:1901265,GO:1901360,GO:1901363,GO:1902531,GO:1902533,GO:1990904
Exons1
Evalue3.55e-29
EggNOG OGsCOG1643@1|root,KOG0925@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size165
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03019,ko03036,ko03041,ko04030
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408632.1694903-CDS-L-digitata_M_contig97569:117..2821682408632.1694903-CDS-L-digitata_M_contig97569:117..282Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig97569 118..282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig97569.1.1prot_L-digitata_M_contig97569.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig97569 118..282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig97569.1.1

>prot_L-digitata_M_contig97569.1.1 ID=prot_L-digitata_M_contig97569.1.1|Name=mRNA_L-digitata_M_contig97569.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=55bp
KVAHLERSGHYLTVKDNQVVSIHPSSVLDNKPVWCMFEEFVLTSKNYIRT
VTGVQ
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mRNA from alignment at L-digitata_M_contig97569:118..282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig97569.1.1 ID=mRNA_L-digitata_M_contig97569.1.1|Name=mRNA_L-digitata_M_contig97569.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=165bp|location=Sequence derived from alignment at L-digitata_M_contig97569:118..282+ (Laminaria digitata LdigPH10_18mv male)
AAGGTGGCGCATCTGGAGCGATCGGGGCACTACCTCACCGTCAAGGACAA
CCAGGTGGTCTCCATCCACCCCTCCTCCGTGCTTGACAACAAGCCGGTCT
GGTGCATGTTCGAAGAGTTCGTGCTCACCTCCAAGAACTACATCCGAACG
GTCACTGGGGTGCAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig97569:118..282+

>mRNA_L-digitata_M_contig97569.1.1 ID=mRNA_L-digitata_M_contig97569.1.1|Name=mRNA_L-digitata_M_contig97569.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=165bp|location=Sequence derived from alignment at L-digitata_M_contig97569:118..282+ (Laminaria digitata LdigPH10_18mv male)
AAGGTGGCGCATCTGGAGCGATCGGGGCACTACCTCACCGTCAAGGACAA
CCAGGTGGTCTCCATCCACCCCTCCTCCGTGCTTGACAACAAGCCGGTCT
GGTGCATGTTCGAAGAGTTCGTGCTCACCTCCAAGAACTACATCCGAACG
GTCACTGGGGTGCAG
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