mRNA_L-digitata_M_contig97508.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig97508.1.1
Unique NamemRNA_L-digitata_M_contig97508.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig97508.1.1 vs. uniprot
Match: A0A2D8PR14_9PROT (Benzoate 1,2-dioxygenase large subunit n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PR14_9PROT)

HSP 1 Score: 272 bits (696), Expect = 4.410e-88
Identity = 125/140 (89.29%), Postives = 131/140 (93.57%), Query Frame = 1 
Query:    1 DDLASPHLRTHRPLGPGKCEVTIWCIAPKNEPDDARFARLRKFEDFFLVSGLSTSDDVVSLDTAQEGFHGGEAGWNNYDRGLSTMKAGPDEEAVKAGINPELHCASWDYEAAFVGWYRHWRKLVEDGTRDAETKA-VAAE 417
            +DLAS HLRTHRPLGPGKCEVTIWCIAPKNEPD+ARFARLRKFEDFFLVSGLSTSDDVVSLDTAQEGFHG EAGWNNYDRGLSTM+ GPDEEA KAGINPELHCASWDYEAAFVGWYRHWRKLVE+GTR A  +  +AAE
Sbjct:  315 NDLASTHLRTHRPLGPGKCEVTIWCIAPKNEPDEARFARLRKFEDFFLVSGLSTSDDVVSLDTAQEGFHGSEAGWNNYDRGLSTMRPGPDEEAEKAGINPELHCASWDYEAAFVGWYRHWRKLVEEGTRQAAAEGEIAAE 454
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BLAST of mRNA_L-digitata_M_contig97508.1.1 vs. uniprot
Match: A0A520P017_9PROT (Benzoate 1,2-dioxygenase large subunit n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520P017_9PROT)

HSP 1 Score: 196 bits (499), Expect = 1.640e-58
Identity = 91/100 (91.00%), Postives = 94/100 (94.00%), Query Frame = 1 
Query:    1 DDLASPHLRTHRPLGPGKCEVTIWCIAPKNEPDDARFARLRKFEDFFLVSGLSTSDDVVSLDTAQEGFHGGEAGWNNYDRGLSTMKAGPDEEAVKAGINP 300
            +DLA+ H RTHRPLGPGKCEVTIWCIAPK EPD+ARFARLRKFEDFFLVSGLSTSDDVVSLDTAQEGFHG EAGWNNYDRGLSTM AGPDEEA KAGINP
Sbjct:  357 NDLATTHQRTHRPLGPGKCEVTIWCIAPKGEPDEARFARLRKFEDFFLVSGLSTSDDVVSLDTAQEGFHGAEAGWNNYDRGLSTMCAGPDEEAEKAGINP 456
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BLAST of mRNA_L-digitata_M_contig97508.1.1 vs. uniprot
Match: A0A6N7FDA5_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FDA5_9PROT)

HSP 1 Score: 174 bits (441), Expect = 1.390e-53
Identity = 79/128 (61.72%), Postives = 97/128 (75.78%), Query Frame = 1 
Query:    1 DDLASPHLRTHRPLGPGKCEVTIWCIAPKNEPDDARFARLRKFEDFFLVSGLSTSDDVVSLDTAQEGFHGGEAGWNNYDRGLSTMKAGPDEEAVKAGINPELHCASWDYEAAFVGWYRHWRKLVEDGT 384
            +DLAS HLR HRPLGPG+CEVTIWCIAPK EP +AR ARLRKFEDFFLV+G++TSDD+VSL+ AQEG  G  A W ++ RG +T+ AGPDE+A   GI+P    ASW+ E  + G YR+WR  +  GT
Sbjct:    3 NDLASTHLRVHRPLGPGRCEVTIWCIAPKGEPREARIARLRKFEDFFLVTGMATSDDLVSLNVAQEGCAGRAARWTDFARGAATVTAGPDEDARALGIHPLSSNASWELETMYYGLYRYWRDALNAGT 130
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BLAST of mRNA_L-digitata_M_contig97508.1.1 vs. uniprot
Match: A0A1F3ZBE1_9PROT (Rieske domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17 TaxID=1797484 RepID=A0A1F3ZBE1_9PROT)

HSP 1 Score: 148 bits (373), Expect = 5.400e-40
Identity = 65/124 (52.42%), Postives = 88/124 (70.97%), Query Frame = 1 
Query:    1 DDLASPHLRTHRPLGPGKCEVTIWCIAPKNEPDDARFARLRKFEDFFLVSGLSTSDDVVSLDTAQEGFHGGEAGWNNYDRGLSTMKAGPDEEAVKAGINPELHCASWDYEAAFVGWYRHWRKLV 372
            +DLAS HLRTHRPLGP + EVT+WCIAP  E  +AR+ARLRKFEDFFL++G++TSDD+VSL+   EG       W ++ RG++T+  G DE A + G+NP    +SW +E  + G YRHW + +
Sbjct:  317 NDLASTHLRTHRPLGPDRTEVTVWCIAPVGESREARYARLRKFEDFFLLTGMATSDDLVSLNIVHEGALADARPWIDFQRGIATLVPGADEAARELGVNPASSNSSWTHETPYHGLYRHWLRRL 440
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BLAST of mRNA_L-digitata_M_contig97508.1.1 vs. uniprot
Match: A0A2S6QD71_9PROT (2-halobenzoate 1,2-dioxygenase large subunit n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QD71_9PROT)

HSP 1 Score: 141 bits (355), Expect = 2.300e-37
Identity = 61/121 (50.41%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:    1 DDLASPHLRTHRPLGPGKCEVTIWCIAPKNEPDDARFARLRKFEDFFLVSGLSTSDDVVSLDTAQEGFHGGEAGWNNYDRGLSTMKAGPDEEAVKAGINPELHCASWDYEAAFVGWYRHWR 363
            +D A+  +RT RP+   K EVTI+C+AP  E  DAR+ARLRKFEDFF+ SG++TSDDVV+L+   EG     A W  + RG+ +M +GPD+ A + G NPE    SWD+E  + G+YR WR
Sbjct:  315 NDFAATQIRTFRPISADKTEVTIYCLAPSEESRDARYARLRKFEDFFMASGMATSDDVVALEATHEGSRARLARWGEFHRGIGSMVSGPDDAAEEGGFNPETSNTSWDHETLYYGFYRKWR 435
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BLAST of mRNA_L-digitata_M_contig97508.1.1 vs. uniprot
Match: A0A520NPV5_9PROT (Benzoate 1,2-dioxygenase large subunit n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NPV5_9PROT)

HSP 1 Score: 139 bits (350), Expect = 1.230e-36
Identity = 60/124 (48.39%), Postives = 83/124 (66.94%), Query Frame = 1 
Query:    1 DDLASPHLRTHRPLGPGKCEVTIWCIAPKNEPDDARFARLRKFEDFFLVSGLSTSDDVVSLDTAQEGFHGGEAGWNNYDRGLSTMKAGPDEEAVKAGINPELHCASWDYEAAFVGWYRHWRKLV 372
            +D A+  +RT RP+   K EVTI+C+AP +E   AR+ARLRKFEDFF+ SG++TSDDVV+L+   EG       W  + RG+ T++AGPD+ A + G NPE   +SWD+E  +  +YR WR  V
Sbjct:  315 NDFAATQIRTFRPISADKTEVTIYCLAPSDESRGARYARLRKFEDFFMASGMATSDDVVALEATHEGSRARVVKWGEFHRGIRTVQAGPDDAAEEGGFNPETSNSSWDHETLYYSFYRRWRDQV 438
[Close]
BLAST of mRNA_L-digitata_M_contig97508.1.1 vs. uniprot
Match: A0A6N7F5I9_9PROT (Rieske 2Fe-2S domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7F5I9_9PROT)

HSP 1 Score: 137 bits (344), Expect = 9.160e-36
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 1 
Query:    4 DLASPHLRTHRPLGPGKCEVTIWCIAPKNEPDDARFARLRKFEDFFLVSGLSTSDDVVSLDTAQEGFHGGEAGWNNYDRGLSTMKAGPDEEAVKAGINPELHCASWDYEAAFVGWYRHWRKLVEDGTRD 390
            D  S  +R  +PLGP + EVT++CIAPK EP +AR ARLRKFEDF+L SG++TSDDV +L+   +G     A WN + RG +TM  GPDE+A   G        +WD+E  + G+YR WR L+  G  D
Sbjct:  316 DNPSTQIRKVKPLGPDRFEVTVYCIAPKGEPAEARAARLRKFEDFYLTSGMATSDDVAALEDTYDGGMATTARWNEFGRGYATMIEGPDEDAAAIGCAARTSMRNWDFETLYHGFYRRWRTLMAAGRND 444
[Close]
BLAST of mRNA_L-digitata_M_contig97508.1.1 vs. uniprot
Match: A0A2D8PUD1_9PROT (Benzoate 1,2-dioxygenase large subunit n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PUD1_9PROT)

HSP 1 Score: 133 bits (334), Expect = 5.030e-34
Identity = 57/124 (45.97%), Postives = 81/124 (65.32%), Query Frame = 1 
Query:    1 DDLASPHLRTHRPLGPGKCEVTIWCIAPKNEPDDARFARLRKFEDFFLVSGLSTSDDVVSLDTAQEGFHGGEAGWNNYDRGLSTMKAGPDEEAVKAGINPELHCASWDYEAAFVGWYRHWRKLV 372
            +D A+  +RT RP+     EVTI+C+AP +E  +AR+ARLRKFEDFF+ SG++TSDDVV+L+   EG    +A W  + RG+ T+  G D+ A + G  PE   +SWD+E  +  +YR WR  V
Sbjct:  367 NDFAATQIRTFRPISADLTEVTIYCLAPSDESQEARYARLRKFEDFFMASGMATSDDVVALEATHEGSRARKAKWGEFHRGIGTLVQGADDLAAEGGFTPETSNSSWDHETLYYSFYRKWRDKV 490
[Close]
BLAST of mRNA_L-digitata_M_contig97508.1.1 vs. uniprot
Match: A0A2E5V1N8_9PROT (Benzoate 1,2-dioxygenase large subunit n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5V1N8_9PROT)

HSP 1 Score: 128 bits (321), Expect = 1.940e-32
Identity = 56/125 (44.80%), Postives = 81/125 (64.80%), Query Frame = 1 
Query:    4 DLASPHLRTHRPLGPGKCEVTIWCIAPKNEPDDARFARLRKFEDFFLVSGLSTSDDVVSLDTAQEGFHGGEAGWNNYDRGLSTMKAGPDEEAVKAGINPELHCASWDYEAAFVGWYRHWRKLVED 378
            D  S  +R  +P+   + EVT++CIAP  E  +AR ARLRKFEDF+L +G++TSDD+ +L+    G    +A WN+++RGL TM  GPDEEA   G +P     SW+ E  F G+YR WR+++ +
Sbjct:  316 DNPSTQIRYVKPVSVNRAEVTVYCIAPVGEGTEARAARLRKFEDFYLTAGMATSDDMAALEDTMMGSRAMQARWNDFNRGLKTMTIGPDEEAKAVGFDPVSSSESWENETLFFGFYRRWREMMSN 440
[Close]
BLAST of mRNA_L-digitata_M_contig97508.1.1 vs. uniprot
Match: UPI0019331FE5 (aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Alcanivorax marinus TaxID=1177169 RepID=UPI0019331FE5)

HSP 1 Score: 128 bits (321), Expect = 2.290e-32
Identity = 55/125 (44.00%), Postives = 80/125 (64.00%), Query Frame = 1 
Query:    4 DLASPHLRTHRPLGPGKCEVTIWCIAPKNEPDDARFARLRKFEDFFLVSGLSTSDDVVSLDTAQEGFHGGEAGWNNYDRGLSTMKAGPDEEAVKAGINPELHCASWDYEAAFVGWYRHWRKLVED 378
            D  S  +R  RPL   +  VT++CIAP+ E D+AR AR+RKFEDF++V+G++T DD+ +L+  Q+G HG  + W    RG+ TM+ GPDE A K G+NP      WD+E  +  +YR W + + D
Sbjct:  328 DQPSTQIRVFRPLSVDRTLVTVYCIAPRGESDEAREARIRKFEDFYMVTGMATPDDLAALEDCQKGAHGELSPWTEVTRGIETMQHGPDEGARKIGLNPVTSNQDWDFETLYYSFYRKWLERMND 452
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig97508.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8PR14_9PROT4.410e-8889.29Benzoate 1,2-dioxygenase large subunit n=1 Tax=Rho... [more]
A0A520P017_9PROT1.640e-5891.00Benzoate 1,2-dioxygenase large subunit n=1 Tax=Rho... [more]
A0A6N7FDA5_9PROT1.390e-5361.72Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A1F3ZBE1_9PROT5.400e-4052.42Rieske domain-containing protein n=1 Tax=Betaprote... [more]
A0A2S6QD71_9PROT2.300e-3750.412-halobenzoate 1,2-dioxygenase large subunit n=1 T... [more]
A0A520NPV5_9PROT1.230e-3648.39Benzoate 1,2-dioxygenase large subunit n=2 Tax=Rho... [more]
A0A6N7F5I9_9PROT9.160e-3648.06Rieske 2Fe-2S domain-containing protein n=1 Tax=Al... [more]
A0A2D8PUD1_9PROT5.030e-3445.97Benzoate 1,2-dioxygenase large subunit n=1 Tax=Rho... [more]
A0A2E5V1N8_9PROT1.940e-3244.80Benzoate 1,2-dioxygenase large subunit n=2 Tax=Rho... [more]
UPI0019331FE52.290e-3244.00aromatic ring-hydroxylating dioxygenase subunit al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig97508contigL-digitata_M_contig97508:2..421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1224136.AMFN01000002_gene971
Preferred namebenA
PFAMsRieske,Ring_hydroxyl_A
Model size420
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00270,RC01378,RC01450,RC01910
KEGG koko:K05549
KEGG ReactionR05290,R05291,R05428,R05621,R05622,R05665,R08100,R08101,R08108,R08109,R08110
KEGG Pathwayko00362,ko00364,ko00622,ko01100,ko01120,ko01220,map00362,map00364,map00622,map01100,map01120,map01220
KEGG ModuleM00551
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.07e-28
EggNOG OGsCOG4638@1|root,COG4638@2|Bacteria,1N6MJ@1224|Proteobacteria,1RYGT@1236|Gammaproteobacteria
EC1.14.12.10
DescriptionCOG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
Cds size420
COG categoryP
BRITEbr01602,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408631.2537236-CDS-L-digitata_M_contig97508:1..4211682408631.2537236-CDS-L-digitata_M_contig97508:1..421Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig97508 2..421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig97508.1.1prot_L-digitata_M_contig97508.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig97508 2..421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig97508.1.1

>prot_L-digitata_M_contig97508.1.1 ID=prot_L-digitata_M_contig97508.1.1|Name=mRNA_L-digitata_M_contig97508.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=140bp
DDLASPHLRTHRPLGPGKCEVTIWCIAPKNEPDDARFARLRKFEDFFLVS
GLSTSDDVVSLDTAQEGFHGGEAGWNNYDRGLSTMKAGPDEEAVKAGINP
ELHCASWDYEAAFVGWYRHWRKLVEDGTRDAETKAVAAE*
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mRNA from alignment at L-digitata_M_contig97508:2..421+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig97508.1.1 ID=mRNA_L-digitata_M_contig97508.1.1|Name=mRNA_L-digitata_M_contig97508.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=420bp|location=Sequence derived from alignment at L-digitata_M_contig97508:2..421+ (Laminaria digitata LdigPH10_18mv male)
GACGACCTGGCCTCGCCCCACTTGCGCACCCACCGCCCGCTCGGCCCCGG
CAAGTGCGAGGTGACCATCTGGTGCATCGCGCCGAAAAACGAACCGGACG
ACGCGCGGTTCGCCCGACTGCGCAAGTTCGAGGATTTCTTCCTGGTCTCC
GGCCTGTCGACGTCGGACGACGTGGTCTCGCTGGATACCGCGCAGGAAGG
CTTTCACGGTGGCGAAGCGGGCTGGAACAATTACGACCGCGGTCTGAGCA
CCATGAAGGCCGGCCCCGACGAAGAAGCGGTCAAAGCCGGCATCAATCCC
GAACTGCACTGCGCCAGCTGGGATTACGAGGCCGCGTTTGTCGGCTGGTA
CCGCCACTGGCGCAAGCTGGTGGAAGACGGCACGCGCGACGCGGAGACGA
AGGCAGTCGCGGCGGAATAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig97508:2..421+

>mRNA_L-digitata_M_contig97508.1.1 ID=mRNA_L-digitata_M_contig97508.1.1|Name=mRNA_L-digitata_M_contig97508.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=420bp|location=Sequence derived from alignment at L-digitata_M_contig97508:2..421+ (Laminaria digitata LdigPH10_18mv male)
GACGACCTGGCCTCGCCCCACTTGCGCACCCACCGCCCGCTCGGCCCCGG
CAAGTGCGAGGTGACCATCTGGTGCATCGCGCCGAAAAACGAACCGGACG
ACGCGCGGTTCGCCCGACTGCGCAAGTTCGAGGATTTCTTCCTGGTCTCC
GGCCTGTCGACGTCGGACGACGTGGTCTCGCTGGATACCGCGCAGGAAGG
CTTTCACGGTGGCGAAGCGGGCTGGAACAATTACGACCGCGGTCTGAGCA
CCATGAAGGCCGGCCCCGACGAAGAAGCGGTCAAAGCCGGCATCAATCCC
GAACTGCACTGCGCCAGCTGGGATTACGAGGCCGCGTTTGTCGGCTGGTA
CCGCCACTGGCGCAAGCTGGTGGAAGACGGCACGCGCGACGCGGAGACGA
AGGCAGTCGCGGCGGAATAA
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