mRNA_L-digitata_M_contig97445.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig97445.1.1
Unique NamemRNA_L-digitata_M_contig97445.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig97445.1.1 vs. uniprot
Match: A0A6H5JFM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.270e-14
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 LKVLVLGGSVTFGHQCVTPEGRRDKECAWPYRLQQWFDERIDDFEVEV 144
            LKV+VLGGSVT+GH C +P G +  +CAWP+R++QWF E  +D ++EV
Sbjct:  148 LKVVVLGGSVTYGHDCSSPTGLKGNDCAWPHRVEQWFQEEYEDLDIEV 195
[Close]
BLAST of mRNA_L-digitata_M_contig97445.1.1 vs. uniprot
Match: D7FNS9_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS9_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 5.420e-13
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 LKVLVLGGSVTFGHQCVTPEGRRDKECAWPYRLQQWFDERIDDFEVEV 144
            LKV+ +GGSVTFG  C +P G     CAWP+RL+QWF E++ DFEVEV
Sbjct:    6 LKVVAIGGSVTFGRNCESPNGLTFNACAWPHRLEQWFQEKVGDFEVEV 53
[Close]
BLAST of mRNA_L-digitata_M_contig97445.1.1 vs. uniprot
Match: D8LJK3_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK3_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 7.990e-13
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 LKVLVLGGSVTFGHQCVTPEGRRDKECAWPYRLQQWFDERIDDFEVEVRESDL 159
            LKV+VLGGSVT+GH C +P G +   CAWP+R++QWF E  +D ++EV  + +
Sbjct:   93 LKVVVLGGSVTYGHDCSSPAGLKGNGCAWPHRVEQWFQEEYEDLDIEVTNASV 145
[Close]
BLAST of mRNA_L-digitata_M_contig97445.1.1 vs. uniprot
Match: A0A6H5JTT5_9PHAE (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.010e-13
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 LKVLVLGGSVTFGHQCVTPEGRRDKECAWPYRLQQWFDERIDDFEVEVRESDL 159
            LKV+VLGGSVTFGH+C +P G     CAWP+R++QWF E  +D ++EV  + +
Sbjct:  121 LKVVVLGGSVTFGHECSSPAGLEGIACAWPHRVEQWFQEENEDLDIEVTNASI 173
[Close]
BLAST of mRNA_L-digitata_M_contig97445.1.1 vs. uniprot
Match: D7FNS8_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS8_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.570e-11
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 LKVLVLGGSVTFGHQCVTPEGRRDKECAWPYRLQQWFDERIDDFEVEV 144
            LKV+ +GGSVTFG  C +P+G  +  CAWP+RL QWF   + DF+VEV
Sbjct:  180 LKVVAIGGSVTFGRSCESPKGLANNACAWPHRLDQWFRAEVGDFKVEV 227
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig97445.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JFM8_9PHAE5.270e-1456.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNS9_ECTSI5.420e-1360.42SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
D8LJK3_ECTSI7.990e-1350.94SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JTT5_9PHAE8.010e-1352.83SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
D7FNS8_ECTSI1.570e-1156.25SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig97445contigL-digitata_M_contig97445:475..639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408630.4572291-CDS-L-digitata_M_contig97445:474..6391682408630.4572291-CDS-L-digitata_M_contig97445:474..639Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig97445 475..639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig97445.1.1prot_L-digitata_M_contig97445.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig97445 475..639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig97445.1.1

>prot_L-digitata_M_contig97445.1.1 ID=prot_L-digitata_M_contig97445.1.1|Name=mRNA_L-digitata_M_contig97445.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=55bp
LKVLVLGGSVTFGHQCVTPEGRRDKECAWPYRLQQWFDERIDDFEVEVRE
SDLQ*
back to top

mRNA from alignment at L-digitata_M_contig97445:475..639+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig97445.1.1 ID=mRNA_L-digitata_M_contig97445.1.1|Name=mRNA_L-digitata_M_contig97445.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=165bp|location=Sequence derived from alignment at L-digitata_M_contig97445:475..639+ (Laminaria digitata LdigPH10_18mv male)
CTAAAGGTGCTGGTGCTGGGCGGTAGCGTGACCTTTGGGCATCAGTGTGT
GACTCCTGAAGGTCGACGTGATAAGGAGTGCGCGTGGCCGTATCGACTAC
AGCAGTGGTTCGATGAGCGCATCGACGATTTCGAAGTGGAGGTGAGAGAA
TCAGACCTACAATAA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig97445:475..639+

>mRNA_L-digitata_M_contig97445.1.1 ID=mRNA_L-digitata_M_contig97445.1.1|Name=mRNA_L-digitata_M_contig97445.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=165bp|location=Sequence derived from alignment at L-digitata_M_contig97445:475..639+ (Laminaria digitata LdigPH10_18mv male)
CTAAAGGTGCTGGTGCTGGGCGGTAGCGTGACCTTTGGGCATCAGTGTGT
GACTCCTGAAGGTCGACGTGATAAGGAGTGCGCGTGGCCGTATCGACTAC
AGCAGTGGTTCGATGAGCGCATCGACGATTTCGAAGTGGAGGTGAGAGAA
TCAGACCTACAATAA
back to top