mRNA_L-digitata_M_contig97090.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig97090.1.1
Unique NamemRNA_L-digitata_M_contig97090.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig97090.1.1 vs. uniprot
Match: A0A6H5L6F7_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6F7_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 5.850e-30
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 1 
Query:    1 YVTFGVFALYNDIALDSAXXXXXXXXXSVPLADVTAFPKLCKAYFVFFEILFRNHITVVLALDTPVFMRVMQALHEGLQ 237
            YV FGVF LYND ALD+ XXXXXXXXXSVPLADVTA+PKLCKAYFVFFEILFRNHITVV+ALDTPVFMRVM ALHEGLQ
Sbjct:  882 YVNFGVFTLYNDKALDNXXXXXXXXXXSVPLADVTAYPKLCKAYFVFFEILFRNHITVVVALDTPVFMRVMHALHEGLQ 960
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BLAST of mRNA_L-digitata_M_contig97090.1.1 vs. uniprot
Match: A0A4D9CV70_9STRA (Importin N-terminal domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV70_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.010e-22
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    1 YVTFGVFALYNDIALDSAXXXXXXXXXSVPLADVTAFPKLCKAYFVFFEILFRNHITVVLALDTPVFMRVMQALHEGLQ 237
            YV FGVFALY D ALD+A         S+P  ++ AFPKL KAYF FFE+LFRNHI  VL+L TPVF++V+QA HEGLQ
Sbjct:  898 YVNFGVFALYEDPALDNALDVVLRLALSIPFQEILAFPKLSKAYFAFFEVLFRNHIPAVLSLSTPVFLQVIQAQHEGLQ 976
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BLAST of mRNA_L-digitata_M_contig97090.1.1 vs. uniprot
Match: A0A835YUW2_9STRA (RAN binding protein 16-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW2_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 7.480e-22
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    1 YVTFGVFALYNDIALDSAXXXXXXXXXSVPLADVTAFPKLCKAYFVFFEILFRNHITVVLALDTPVFMRVMQALHEGLQ 237
            YV FGVFALY D ALD+A         ++P  D+TAFPKL +AY+ FFEILFRNHI +VL LDTP+F +V+ A HEGLQ
Sbjct:  904 YVNFGVFALYGDKALDNALETVLKLAFNIPQRDITAFPKLARAYYAFFEILFRNHINIVLQLDTPMFTQVLAAQHEGLQ 982
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BLAST of mRNA_L-digitata_M_contig97090.1.1 vs. uniprot
Match: A0A7S2V6C0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6C0_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.330e-21
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    1 YVTFGVFALYNDIALDSAXXXXXXXXXSVPLADVTAFPKLCKAYFVFFEILFRNHITVVLALDTPVFMRVMQALHEGLQ 237
            YV FGVFALYND AL+ A         ++ L+DV A+PKL KAYF FFE+LFRNH+  V+ LDTP+F+++++A HEG+Q
Sbjct:    3 YVNFGVFALYNDKALEDALGVGLKLGLALDLSDVMAYPKLSKAYFSFFEVLFRNHLEAVVVLDTPIFLKIVEAQHEGVQ 81
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BLAST of mRNA_L-digitata_M_contig97090.1.1 vs. uniprot
Match: A0A7S2L6Z5_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L6Z5_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.680e-20
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    1 YVTFGVFALYNDIALDSAXXXXXXXXXSVPLADVTAFPKLCKAYFVFFEILFRNHITVVLALDTPVFMRVMQALHEGLQ 237
            YV FGVFALYND  LD+A         S+PL DV A+PKL KA++ F EILFRNHIT + ALDT VFM++M ++HEGLQ
Sbjct:  902 YVCFGVFALYNDQCLDNALNISLQLSLSIPLDDVLAYPKLSKAFYGFVEILFRNHITTIFALDTNVFMQLMLSVHEGLQ 980
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BLAST of mRNA_L-digitata_M_contig97090.1.1 vs. uniprot
Match: A0A7S1UQS7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UQS7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 7.870e-20
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 YVTFGVFALYNDIALDSAXXXXXXXXXSVPLADVTAFPKLCKAYFVFFEILFRNHITVVLALDTPVFMRVMQALHEGLQ 237
            YV FGVF+LYND ALD+A   XXXX  SVPL DVTA+PK  KA+F   EILFRNH   V ALDT VFM++M A+HEGLQ
Sbjct:  487 YVCFGVFSLYNDPALDNALDIXXXXALSVPLEDVTAYPKFSKAFFGLIEILFRNHKKTVFALDTNVFMQLMTAVHEGLQ 565
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BLAST of mRNA_L-digitata_M_contig97090.1.1 vs. uniprot
Match: A0A7S0CH83_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CH83_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.470e-19
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:    1 YVTFGVFALYNDIALDSAXXXXXXXXXSVPLADVTAFPKLCKAYFVFFEILFRNHITVVLALDTPVFMRVMQALHEGLQ 237
            YV FGVFALYND AL +A          VPL D+ A+PKL KA F F EILFRNHIT VLAL+T V M++M A+HEGLQ
Sbjct:  594 YVCFGVFALYNDPALKNALDVALQLTLGVPLDDILAYPKLSKAIFGFIEILFRNHITTVLALETRVIMQLMHAVHEGLQ 672
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BLAST of mRNA_L-digitata_M_contig97090.1.1 vs. uniprot
Match: A0A7R9U4R6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4R6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.030e-19
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 YVTFGVFALYNDIALDSAXXXXXXXXXSVPLADVTAFPKLCKAYFVFFEILFRNHITVVLALDTPVFMRVMQALHEGLQ 237
            YV FGVFALY+D AL++A         S+PL +V A+PKLC+A+F FFEI+FRNH+ +++ALD P F +V +AL+EGLQ
Sbjct:  892 YVNFGVFALYHDKALENAMEMALTLTLSLPLDEVFAYPKLCRAFFQFFEIVFRNHLAILMALDHPSFTKVFEALNEGLQ 970
[Close]
BLAST of mRNA_L-digitata_M_contig97090.1.1 vs. uniprot
Match: A0A7S2S4B4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S4B4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.160e-18
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:    1 YVTFGVFALYNDIALDSAXXXXXXXXXSVPLADVTAFPKLCKAYFVFFEILFRNHITVVLALDTPVFMRVMQALHEGLQ 237
            YV FGVFALYND ALD A         +V L DV A+PKL K+Y+ F EI+FRNHI  VLAL+  V M++M A+HEGLQ
Sbjct:  231 YVCFGVFALYNDPALDKALDVGLKMIMTVTLEDVLAYPKLSKSYYGFVEIIFRNHIKTVLALENNVLMQLMTAVHEGLQ 309
[Close]
BLAST of mRNA_L-digitata_M_contig97090.1.1 vs. uniprot
Match: A0A7S2URD2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URD2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.150e-17
Identity = 50/79 (63.29%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 YVTFGVFALYNDIALDSAXXXXXXXXXSVPLADVTAFPKLCKAYFVFFEILFRNHITVVLALDTPVFMRVMQALHEGLQ 237
            YV FGVFALYND ALD+A XXXXXXX ++PL DV A+PKL K+++   E+LFRNH   VL+++T VFM++M A+HEGLQ
Sbjct:  470 YVCFGVFALYNDPALDNALXXXXXXXLNIPLDDVIAYPKLSKSFYGLIELLFRNHKATVLSMETGVFMQLMTAVHEGLQ 548
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig97090.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6F7_9PHAE5.850e-3089.87Importin N-terminal domain-containing protein n=2 ... [more]
A0A4D9CV70_9STRA4.010e-2262.03Importin N-terminal domain-containing protein n=3 ... [more]
A0A835YUW2_9STRA7.480e-2260.76RAN binding protein 16-like protein n=1 Tax=Tribon... [more]
A0A7S2V6C0_9STRA1.330e-2155.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2L6Z5_9STRA1.680e-2060.76Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S1UQS7_9STRA7.870e-2067.09Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S0CH83_9STRA1.470e-1962.03Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7R9U4R6_9STRA2.030e-1955.70Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2S4B4_9STRA5.160e-1858.23Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2URD2_9STRA1.150e-1763.29Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig97090contigL-digitata_M_contig97090:203..919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3N6
Preferred nameXPO7
PFAMsIBN_N
Model size237
Max annot lvl2759|Eukaryota
KEGG koko:K18460
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005049,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0012505,GO:0015031,GO:0015833,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019899,GO:0031267,GO:0031967,GO:0031975,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051020,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
Exons2
Evalue9.59e-31
EggNOG OGsKOG1410@1|root,KOG1410@2759|Eukaryota
Descriptionnuclear export signal receptor activity
Cds size237
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408626.1691458-CDS-L-digitata_M_contig97090:202..4001682408626.1691458-CDS-L-digitata_M_contig97090:202..400Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig97090 203..400 -
1682408626.1881728-CDS-L-digitata_M_contig97090:880..9191682408626.1881728-CDS-L-digitata_M_contig97090:880..919Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig97090 881..919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig97090.1.1prot_L-digitata_M_contig97090.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig97090 203..919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig97090.1.1

>prot_L-digitata_M_contig97090.1.1 ID=prot_L-digitata_M_contig97090.1.1|Name=mRNA_L-digitata_M_contig97090.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=79bp
YVTFGVFALYNDIALDSALETALQLALSVPLADVTAFPKLCKAYFVFFEI
LFRNHITVVLALDTPVFMRVMQALHEGLQ
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mRNA from alignment at L-digitata_M_contig97090:203..919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig97090.1.1 ID=mRNA_L-digitata_M_contig97090.1.1|Name=mRNA_L-digitata_M_contig97090.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=717bp|location=Sequence derived from alignment at L-digitata_M_contig97090:203..919- (Laminaria digitata LdigPH10_18mv male)
TACGTGACCTTCGGGGTGTTTGCACTCTACAACGATATTGTACGGGGTGG
TCGTTTGGGGGGGGGGGTGGGGGGGTAATTATTATCATGCATAGCCGTAG
TCGTATGACCATAGACCCTCGCATCCCTACAATGTGGTTGTTTGAGTGGG
GGTTGGGGTGGCAGCGGTGTCCTAGGACGTAGACGAACTTCGGGGTGTTC
ACGCTCTACAACGATAAGGTGCGAGGTGGTTTTTTTTGGGGGGGGGGGTT
GGGGGGGTAGCGGTGTCGTATTTTTATGGTCCCTCCGCCCGCCCCTCCCC
CTCCTTCGCCCGCATTCCTCTTCCATGTCTAAACCATCTTGCGATTTTTT
GCTCCTCGGATCTCGATAACGACACGCACACGTACGCACGAACAAAACCA
TAACTAGCAATCAAAACAAAACACAACGAATACAAACTAAACTCCTAACC
CTAACTATTAATAAAAACAAAACTCAAAACAAAAAACTTCCTGTTTTTCG
TTTGTTTTTTCACAAAAAGGCGCTGGATAGCGCTTTGGAGACGGCGCTGC
AGCTGGCCTTGAGCGTGCCCCTGGCGGACGTGACGGCGTTCCCGAAGCTT
TGCAAGGCGTACTTCGTTTTTTTCGAGATCCTTTTCCGGAATCACATCAC
CGTCGTCTTGGCCCTGGACACCCCCGTGTTCATGCGCGTCATGCAAGCTC
TCCACGAGGGTTTGCAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig97090:203..919-

>mRNA_L-digitata_M_contig97090.1.1 ID=mRNA_L-digitata_M_contig97090.1.1|Name=mRNA_L-digitata_M_contig97090.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=237bp|location=Sequence derived from alignment at L-digitata_M_contig97090:203..919- (Laminaria digitata LdigPH10_18mv male)
TACGTGACCTTCGGGGTGTTTGCACTCTACAACGATATTGCGCTGGATAG
CGCTTTGGAGACGGCGCTGCAGCTGGCCTTGAGCGTGCCCCTGGCGGACG
TGACGGCGTTCCCGAAGCTTTGCAAGGCGTACTTCGTTTTTTTCGAGATC
CTTTTCCGGAATCACATCACCGTCGTCTTGGCCCTGGACACCCCCGTGTT
CATGCGCGTCATGCAAGCTCTCCACGAGGGTTTGCAG
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