mRNA_L-digitata_M_contig97065.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig97065.2.1
Unique NamemRNA_L-digitata_M_contig97065.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig97065.2.1 vs. uniprot
Match: A0A520NP64_9PROT (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NP64_9PROT)

HSP 1 Score: 163 bits (412), Expect = 2.990e-49
Identity = 75/99 (75.76%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:    1 LHIVDSMHTRKRMMFDLSDAFIVLPGGLGTLEEVFEMITWRQLGRHEKPIVLVSTNDYWAPFQDLVDRVVDSDFAHGKVETYFRIAADPVAAMRILSGD 297
            LH+VDSMHTRKRMMFDLSDAF+ LPGGLGTLEEVFEM+TWRQLGRH+KPIVLVSTN+YW PF  LVDRVV +DFAHG   TYF    DP AA+  L  D
Sbjct:   86 LHVVDSMHTRKRMMFDLSDAFVALPGGLGTLEEVFEMVTWRQLGRHQKPIVLVSTNEYWQPFDKLVDRVVSNDFAHGDATTYFNTVPDPSAAIDFLLND 184
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BLAST of mRNA_L-digitata_M_contig97065.2.1 vs. uniprot
Match: A0A2D8PTS5_9PROT (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PTS5_9PROT)

HSP 1 Score: 157 bits (396), Expect = 2.930e-47
Identity = 71/93 (76.34%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    1 LHIVDSMHTRKRMMFDLSDAFIVLPGGLGTLEEVFEMITWRQLGRHEKPIVLVSTNDYWAPFQDLVDRVVDSDFAHGKVETYFRIAADPVAAM 279
            LH+VDSMHTRKRMMFDLSDAF VLPGGLGTLEE FE+ITWRQLGRHEKPIVL+ST DYW PF DLV+RV++ DFAHG  + YF I   P AA+
Sbjct:   53 LHVVDSMHTRKRMMFDLSDAFFVLPGGLGTLEEAFEVITWRQLGRHEKPIVLISTRDYWQPFADLVERVIEEDFAHGNPDDYFSIEPTPAAAL 145
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BLAST of mRNA_L-digitata_M_contig97065.2.1 vs. uniprot
Match: A0A2D8G555_9PROT (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G555_9PROT)

HSP 1 Score: 157 bits (398), Expect = 4.010e-47
Identity = 71/99 (71.72%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    1 LHIVDSMHTRKRMMFDLSDAFIVLPGGLGTLEEVFEMITWRQLGRHEKPIVLVSTNDYWAPFQDLVDRVVDSDFAHGKVETYFRIAADPVAAMRILSGD 297
            LH+VDSMHTRKR MFDLSD FI LPGGLGTLEEVFEM+TWRQLGRHEKPIVL+STN+YW PF  LVDRVV++ FA G   TY+R  +DP +AM +L+ +
Sbjct:   86 LHVVDSMHTRKRKMFDLSDGFIGLPGGLGTLEEVFEMVTWRQLGRHEKPIVLISTNNYWEPFDSLVDRVVENGFAXGDTSTYYRTVSDPASAMELLTSN 184
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BLAST of mRNA_L-digitata_M_contig97065.2.1 vs. uniprot
Match: A0A2S6Q7E8_9PROT (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q7E8_9PROT)

HSP 1 Score: 136 bits (343), Expect = 8.890e-39
Identity = 64/93 (68.82%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    1 LHIVDSMHTRKRMMFDLSDAFIVLPGGLGTLEEVFEMITWRQLGRHEKPIVLVSTNDYWAPFQDLVDRVVDSDFAHGKVETYFRIAADPVAAM 279
            LHIVDSMHTRKRMMF+LSDAFI LPGGLGTLEEVFEMITWR+L +H KPI+L+ST+DYW PF  LV  VV++ FAH     +F   ADP  A+
Sbjct:   86 LHIVDSMHTRKRMMFELSDAFIALPGGLGTLEEVFEMITWRRLDQHVKPIILISTDDYWEPFDSLVRNVVENGFAHTNALAHFCSVADPSTAI 178
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BLAST of mRNA_L-digitata_M_contig97065.2.1 vs. uniprot
Match: A0A2D8HLY8_9PROT (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Sneathiella sp. TaxID=1964365 RepID=A0A2D8HLY8_9PROT)

HSP 1 Score: 120 bits (301), Expect = 2.600e-32
Identity = 51/88 (57.95%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:    1 LHIVDSMHTRKRMMFDLSDAFIVLPGGLGTLEEVFEMITWRQLGRHEKPIVLVSTNDYWAPFQDLVDRVVDSDFAHGKVETYFRIAAD 264
            LH+VDSMHTRK  MF++SDAF VLPGGLGTL+E FEMITWRQ+G H+KP++LV+ +DYW P  DLV+ ++ + FA  +   YF + ++
Sbjct:   83 LHVVDSMHTRKAKMFEMSDAFAVLPGGLGTLDETFEMITWRQIGLHDKPVLLVNHHDYWRPLLDLVEHMIGAGFAEPEAREYFTVVSN 170
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BLAST of mRNA_L-digitata_M_contig97065.2.1 vs. uniprot
Match: UPI00146CD1A3 (TIGR00730 family Rossman fold protein n=1 Tax=Sneathiella limimaris TaxID=1964213 RepID=UPI00146CD1A3)

HSP 1 Score: 120 bits (300), Expect = 3.780e-32
Identity = 52/85 (61.18%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    1 LHIVDSMHTRKRMMFDLSDAFIVLPGGLGTLEEVFEMITWRQLGRHEKPIVLVSTNDYWAPFQDLVDRVVDSDFAHGKVETYFRI 255
            LH+VDSMHTRK MMFD +DAF+VLPGGLGTL+E FEMITWRQL  H+KPIVLV+  +YW PF D++D ++ + FA    +  F +
Sbjct:   84 LHVVDSMHTRKMMMFDRADAFVVLPGGLGTLDETFEMITWRQLKLHDKPIVLVNYKNYWQPFLDMIDHLISAGFAESSAKELFTV 168
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BLAST of mRNA_L-digitata_M_contig97065.2.1 vs. uniprot
Match: UPI000472A911 (TIGR00730 family Rossman fold protein n=1 Tax=Sneathiella glossodoripedis TaxID=418853 RepID=UPI000472A911)

HSP 1 Score: 119 bits (299), Expect = 5.350e-32
Identity = 52/85 (61.18%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    1 LHIVDSMHTRKRMMFDLSDAFIVLPGGLGTLEEVFEMITWRQLGRHEKPIVLVSTNDYWAPFQDLVDRVVDSDFAHGKVETYFRI 255
            LH+VDSMHTRK MMFD SDAF+VLPGGLGTL+E FEMITWRQL  H+KPI+LV    YW PF  L+D ++++ F     + YF +
Sbjct:   84 LHVVDSMHTRKMMMFDRSDAFVVLPGGLGTLDETFEMITWRQLKLHDKPIILVDYKGYWTPFLQLIDHMIEAGFVEPAAKEYFTV 168
[Close]
BLAST of mRNA_L-digitata_M_contig97065.2.1 vs. uniprot
Match: A0A1Y5E1U7_9PROT (Cytokinin riboside 5'-monophosphate phosphoribohydrolase n=1 Tax=Alphaproteobacteria bacterium 46_93_T64 TaxID=1856292 RepID=A0A1Y5E1U7_9PROT)

HSP 1 Score: 119 bits (298), Expect = 7.570e-32
Identity = 50/85 (58.82%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    1 LHIVDSMHTRKRMMFDLSDAFIVLPGGLGTLEEVFEMITWRQLGRHEKPIVLVSTNDYWAPFQDLVDRVVDSDFAHGKVETYFRI 255
            LH+VDSMHTRK+MMF+ SDAF+VLPGGLGTL+E FEM+TWRQLG H+KPI+LV+  +YW PF +L+D ++++ F     +  F +
Sbjct:   84 LHVVDSMHTRKQMMFERSDAFVVLPGGLGTLDETFEMVTWRQLGLHDKPILLVNYKNYWKPFLELIDHMIEAGFVEPSAKELFLV 168
[Close]
BLAST of mRNA_L-digitata_M_contig97065.2.1 vs. uniprot
Match: UPI00146D96C0 (TIGR00730 family Rossman fold protein n=1 Tax=Sneathiella aquimaris TaxID=2599305 RepID=UPI00146D96C0)

HSP 1 Score: 118 bits (295), Expect = 2.150e-31
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    1 LHIVDSMHTRKRMMFDLSDAFIVLPGGLGTLEEVFEMITWRQLGRHEKPIVLVSTNDYWAPFQDLVDRVVDSDFAHGKVETYFRI 255
            LH+VDSMH+RK+MMF+ SDAF+VLPGG+GTL+E FEMITWRQL  H+KPI+LV+  DYW PF DL++ ++D  F   +V   F +
Sbjct:   84 LHVVDSMHSRKQMMFERSDAFVVLPGGIGTLDETFEMITWRQLKLHDKPIILVNFQDYWGPFIDLMNHMIDQGFVEKEVFELFEV 168
[Close]
BLAST of mRNA_L-digitata_M_contig97065.2.1 vs. uniprot
Match: UPI00187B37B6 (TIGR00730 family Rossman fold protein n=1 Tax=Sneathiella sp. P13V-1 TaxID=2697366 RepID=UPI00187B37B6)

HSP 1 Score: 118 bits (295), Expect = 2.150e-31
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 LHIVDSMHTRKRMMFDLSDAFIVLPGGLGTLEEVFEMITWRQLGRHEKPIVLVSTNDYWAPFQDLVDRVVDSDFAHGKVETYFRI 255
            L++VDSMHTRK+MMF+ SDAF+VLPGGLGTL+E FEMITWRQL  H+KPI+LV+  DYW PF DLV  ++ + F       YF +
Sbjct:   84 LYVVDSMHTRKQMMFEKSDAFVVLPGGLGTLDETFEMITWRQLKLHDKPIILVNYKDYWKPFMDLVHHMIKAGFVEAGALNYFTV 168
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig97065.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A520NP64_9PROT2.990e-4975.76Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A2D8PTS5_9PROT2.930e-4776.34Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A2D8G555_9PROT4.010e-4771.72Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A2S6Q7E8_9PROT8.890e-3968.82Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
A0A2D8HLY8_9PROT2.600e-3257.95Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
UPI00146CD1A33.780e-3261.18TIGR00730 family Rossman fold protein n=1 Tax=Snea... [more]
UPI000472A9115.350e-3261.18TIGR00730 family Rossman fold protein n=1 Tax=Snea... [more]
A0A1Y5E1U7_9PROT7.570e-3258.82Cytokinin riboside 5'-monophosphate phosphoribohyd... [more]
UPI00146D96C02.150e-3160.00TIGR00730 family Rossman fold protein n=1 Tax=Snea... [more]
UPI00187B37B62.150e-3161.18TIGR00730 family Rossman fold protein n=1 Tax=Snea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig97065contigL-digitata_M_contig97065:686..988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1380394.JADL01000014_gene217
PFAMsLysine_decarbox
Model size303
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00063,RC00318
KEGG koko:K06966
KEGG ReactionR00182,R00510
KEGG Pathwayko00230,ko00240,map00230,map00240
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.32e-28
EggNOG OGsCOG1611@1|root,COG1611@2|Bacteria,1RD59@1224|Proteobacteria,2U5DP@28211|Alphaproteobacteria,2JSHV@204441|Rhodospirillales
EC3.2.2.10
DescriptionBelongs to the LOG family
Cds size285
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408625.8159566-CDS-L-digitata_M_contig97065:685..9701682408625.8159566-CDS-L-digitata_M_contig97065:685..970Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig97065 686..970 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408625.829568-UTR-L-digitata_M_contig97065:970..9881682408625.829568-UTR-L-digitata_M_contig97065:970..988Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig97065 971..988 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig97065.2.1prot_L-digitata_M_contig97065.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig97065 686..970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig97065.2.1

>prot_L-digitata_M_contig97065.2.1 ID=prot_L-digitata_M_contig97065.2.1|Name=mRNA_L-digitata_M_contig97065.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=95bp
MHTRKRMMFDLSDAFIVLPGGLGTLEEVFEMITWRQLGRHEKPIVLVSTN
DYWAPFQDLVDRVVDSDFAHGKVETYFRIAADPVAAMRILSGDD*
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mRNA from alignment at L-digitata_M_contig97065:686..988-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig97065.2.1 ID=mRNA_L-digitata_M_contig97065.2.1|Name=mRNA_L-digitata_M_contig97065.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=303bp|location=Sequence derived from alignment at L-digitata_M_contig97065:686..988- (Laminaria digitata LdigPH10_18mv male)
CTTCACATCGTGGATTCTATGCATACCCGCAAGCGGATGATGTTCGACCT
GTCGGATGCCTTTATCGTGCTACCGGGGGGCCTCGGAACGCTGGAGGAAG
TGTTTGAAATGATTACGTGGCGTCAGCTTGGCCGGCACGAGAAGCCGATC
GTCCTGGTCAGCACAAATGACTATTGGGCCCCGTTTCAGGATCTGGTCGA
CCGGGTTGTCGACAGCGACTTCGCCCATGGCAAAGTCGAAACGTATTTCC
GCATCGCCGCCGATCCTGTGGCGGCGATGCGGATATTGTCGGGCGACGAC
TAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig97065:686..988-

>mRNA_L-digitata_M_contig97065.2.1 ID=mRNA_L-digitata_M_contig97065.2.1|Name=mRNA_L-digitata_M_contig97065.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=285bp|location=Sequence derived from alignment at L-digitata_M_contig97065:686..988- (Laminaria digitata LdigPH10_18mv male)
ATGCATACCCGCAAGCGGATGATGTTCGACCTGTCGGATGCCTTTATCGT
GCTACCGGGGGGCCTCGGAACGCTGGAGGAAGTGTTTGAAATGATTACGT
GGCGTCAGCTTGGCCGGCACGAGAAGCCGATCGTCCTGGTCAGCACAAAT
GACTATTGGGCCCCGTTTCAGGATCTGGTCGACCGGGTTGTCGACAGCGA
CTTCGCCCATGGCAAAGTCGAAACGTATTTCCGCATCGCCGCCGATCCTG
TGGCGGCGATGCGGATATTGTCGGGCGACGACTAA
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