mRNA_L-digitata_M_contig102555.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-digitata_M_contig102555.1.1
Unique Name	mRNA_L-digitata_M_contig102555.1.1
Type	mRNA
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))

Homology

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BLAST of mRNA_L-digitata_M_contig102555.1.1 vs. uniprot
Match: A0A2D4M9W1_9SAUR (Uncharacterized protein (Fragment) n=1 Tax=Micrurus spixii TaxID=129469 RepID=A0A2D4M9W1_9SAUR)

HSP 1 Score: 55.5 bits (132), Expect = 1.550e-8
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1

Query:    4 ENGHIEVVDLLLSYRAPVDQENRDGRSPLMAAARAGHVEITRILIEAGADV 156
            ENGH +V D+LL   A ++ E+  GR+PLM AARAGHV   + LI  GA+V
Sbjct:   13 ENGHTDVADVLLQADADLEHESEGGRTPLMKAARAGHVCTVQFLISKGANV 63

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BLAST of mRNA_L-digitata_M_contig102555.1.1 vs. uniprot
Match: A0A2D4M8X5_9SAUR (Uncharacterized protein (Fragment) n=2 Tax=Micrurus spixii TaxID=129469 RepID=A0A2D4M8X5_9SAUR)

HSP 1 Score: 55.5 bits (132), Expect = 1.390e-7
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1

Query:    4 ENGHIEVVDLLLSYRAPVDQENRDGRSPLMAAARAGHVEITRILIEAGADV 156
            ENGH +V D+LL   A ++ E+  GR+PLM AARAGHV   + LI  GA+V
Sbjct:   13 ENGHTDVADVLLQADADLEHESEGGRTPLMKAARAGHVCTVQFLISKGANV 63

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BLAST of mRNA_L-digitata_M_contig102555.1.1 vs. uniprot
Match: A0A8D2N246_ZONAL (Ankyrin repeat domain 17 n=1 Tax=Zonotrichia albicollis TaxID=44394 RepID=A0A8D2N246_ZONAL)

HSP 1 Score: 55.5 bits (132), Expect = 1.400e-7
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1

Query:    4 ENGHIEVVDLLLSYRAPVDQENRDGRSPLMAAARAGHVEITRILIEAGADV 156
            ENGH +V D+LL   A ++ E+  GR+PLM AARAGHV   + LI  GA+V
Sbjct:  454 ENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHVCTVQFLISKGANV 504

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BLAST of mRNA_L-digitata_M_contig102555.1.1 vs. uniprot
Match: A0A8D2MZZ9_ZONAL (Ankyrin repeat domain 17 n=2 Tax=Zonotrichia albicollis TaxID=44394 RepID=A0A8D2MZZ9_ZONAL)

HSP 1 Score: 55.5 bits (132), Expect = 1.400e-7
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1

Query:    4 ENGHIEVVDLLLSYRAPVDQENRDGRSPLMAAARAGHVEITRILIEAGADV 156
            ENGH +V D+LL   A ++ E+  GR+PLM AARAGHV   + LI  GA+V
Sbjct:  454 ENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHVCTVQFLISKGANV 504

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BLAST of mRNA_L-digitata_M_contig102555.1.1 vs. uniprot
Match: A0A6I8PI05_ORNAN (Ankyrin repeat domain 17 n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8PI05_ORNAN)

HSP 1 Score: 55.5 bits (132), Expect = 1.400e-7
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1

Query:    4 ENGHIEVVDLLLSYRAPVDQENRDGRSPLMAAARAGHVEITRILIEAGADV 156
            ENGH +V D+LL   A ++ E+  GR+PLM AARAGHV   + LI  GA+V
Sbjct:  499 ENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHVCTVQFLISKGANV 549

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BLAST of mRNA_L-digitata_M_contig102555.1.1 vs. uniprot
Match: A0A8C5NMT2_JUNHY (Ankyrin repeat domain 17 n=1 Tax=Junco hyemalis TaxID=40217 RepID=A0A8C5NMT2_JUNHY)

HSP 1 Score: 55.5 bits (132), Expect = 1.400e-7
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1

Query:    4 ENGHIEVVDLLLSYRAPVDQENRDGRSPLMAAARAGHVEITRILIEAGADV 156
            ENGH +V D+LL   A ++ E+  GR+PLM AARAGHV   + LI  GA+V
Sbjct:  492 ENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHVCTVQFLISKGANV 542

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BLAST of mRNA_L-digitata_M_contig102555.1.1 vs. uniprot
Match: A0A670K2I9_PODMU (Ankyrin repeat domain 17 n=2 Tax=Podarcis muralis TaxID=64176 RepID=A0A670K2I9_PODMU)

HSP 1 Score: 55.5 bits (132), Expect = 1.400e-7
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1

Query:    4 ENGHIEVVDLLLSYRAPVDQENRDGRSPLMAAARAGHVEITRILIEAGADV 156
            ENGH +V D+LL   A ++ E+  GR+PLM AARAGHV   + LI  GA+V
Sbjct:  488 ENGHTDVADVLLQADADLEHESEGGRTPLMKAARAGHVCTVQFLISKGANV 538

[Close]

BLAST of mRNA_L-digitata_M_contig102555.1.1 vs. uniprot
Match: A0A452IE46_9SAUR (Ankyrin repeat domain 17 n=35 Tax=Sauria TaxID=32561 RepID=A0A452IE46_9SAUR)

HSP 1 Score: 55.5 bits (132), Expect = 1.400e-7
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1

Query:    4 ENGHIEVVDLLLSYRAPVDQENRDGRSPLMAAARAGHVEITRILIEAGADV 156
            ENGH +V D+LL   A ++ E+  GR+PLM AARAGHV   + LI  GA+V
Sbjct:  501 ENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHVCTVQFLISKGANV 551

[Close]

BLAST of mRNA_L-digitata_M_contig102555.1.1 vs. uniprot
Match: A0A670ZND9_PSETE (Ankyrin repeat domain 17 n=10 Tax=Elapidae TaxID=8602 RepID=A0A670ZND9_PSETE)

HSP 1 Score: 55.5 bits (132), Expect = 1.400e-7
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1

Query:    4 ENGHIEVVDLLLSYRAPVDQENRDGRSPLMAAARAGHVEITRILIEAGADV 156
            ENGH +V D+LL   A ++ E+  GR+PLM AARAGHV   + LI  GA+V
Sbjct:  490 ENGHTDVADVLLQADADLEHESEGGRTPLMKAARAGHVCTVQFLISKGANV 540

[Close]

BLAST of mRNA_L-digitata_M_contig102555.1.1 vs. uniprot
Match: UPI001F035FC6 (ankyrin repeat domain-containing protein 17-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F035FC6)

HSP 1 Score: 55.1 bits (131), Expect = 1.910e-7
Identity = 23/49 (46.94%), Postives = 37/49 (75.51%), Query Frame = 1

Query:   10 GHIEVVDLLLSYRAPVDQENRDGRSPLMAAARAGHVEITRILIEAGADV 156
            GH EVV LLL Y++ ++   +DG +PLM AAR GH+ + +++++AGA+V
Sbjct:  247 GHHEVVKLLLEYKSNIEHRTKDGCTPLMLAAREGHLIVAQLILDAGAEV 295

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig102555.1.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig102555.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2D4M9W1_9SAUR	1.550e-8	52.94	Uncharacterized protein (Fragment) n=1 Tax=Micruru...	[more]
A0A2D4M8X5_9SAUR	1.390e-7	52.94	Uncharacterized protein (Fragment) n=2 Tax=Micruru...	[more]
A0A8D2N246_ZONAL	1.400e-7	52.94	Ankyrin repeat domain 17 n=1 Tax=Zonotrichia albic...	[more]
A0A8D2MZZ9_ZONAL	1.400e-7	52.94	Ankyrin repeat domain 17 n=2 Tax=Zonotrichia albic...	[more]
A0A6I8PI05_ORNAN	1.400e-7	52.94	Ankyrin repeat domain 17 n=1 Tax=Ornithorhynchus a...	[more]
A0A8C5NMT2_JUNHY	1.400e-7	52.94	Ankyrin repeat domain 17 n=1 Tax=Junco hyemalis Ta...	[more]
A0A670K2I9_PODMU	1.400e-7	52.94	Ankyrin repeat domain 17 n=2 Tax=Podarcis muralis ...	[more]
A0A452IE46_9SAUR	1.400e-7	52.94	Ankyrin repeat domain 17 n=35 Tax=Sauria TaxID=325...	[more]
A0A670ZND9_PSETE	1.400e-7	52.94	Ankyrin repeat domain 17 n=10 Tax=Elapidae TaxID=8...	[more]
UPI001F035FC6	1.910e-7	46.94	ankyrin repeat domain-containing protein 17-like n...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig102555	contig	L-digitata_M_contig102555:3..158 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	1231391.AMZF01000014_gene2340
Preferred name	arp3
PFAMs	Ank_2,Ank_3,Ank_4,Ank_5
Model size	156
Max annot lvl	28216\|Betaproteobacteria
KEGG ko	ko:K06867
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Evalue	4.93e-08
EggNOG OGs	COG0666@1\|root,COG0666@2\|Bacteria,1N952@1224\|Proteobacteria,2VPIV@28216\|Betaproteobacteria,3T9A1@506\|Alcaligenaceae
Description	Ankyrin repeats (3 copies)
Cds size	156
COG category	S
BRITE	ko00000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682406630.6844323-CDS-L-digitata_M_contig102555:2..158	1682406630.6844323-CDS-L-digitata_M_contig102555:2..158	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig102555 3..158 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig102555.1.1	prot_L-digitata_M_contig102555.1.1	Laminaria digitata LdigPH10_18mv male	polypeptide	L-digitata_M_contig102555 3..158 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-digitata_M_contig102555:3..158+
coding sequence from alignment at L-digitata_M_contig102555:3..158+

protein sequence of mRNA_L-digitata_M_contig102555.1.1

>prot_L-digitata_M_contig102555.1.1 ID=prot_L-digitata_M_contig102555.1.1|Name=mRNA_L-digitata_M_contig102555.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=52bp
AENGHIEVVDLLLSYRAPVDQENRDGRSPLMAAARAGHVEITRILIEAGA
DV

mRNA from alignment at L-digitata_M_contig102555:3..158+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-digitata_M_contig102555.1.1 ID=mRNA_L-digitata_M_contig102555.1.1|Name=mRNA_L-digitata_M_contig102555.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=156bp|location=Sequence derived from alignment at L-digitata_M_contig102555:3..158+ (Laminaria digitata LdigPH10_18mv male)
GCCGAGAACGGCCATATCGAGGTTGTGGACTTGCTGCTGTCTTACAGGGC
ACCGGTAGATCAGGAAAACCGCGATGGGCGCTCGCCGCTGATGGCAGCCG
CACGTGCGGGACATGTTGAAATTACACGTATCCTTATCGAAGCCGGAGCT
GATGTG

Coding sequence (CDS) from alignment at L-digitata_M_contig102555:3..158+

>mRNA_L-digitata_M_contig102555.1.1 ID=mRNA_L-digitata_M_contig102555.1.1|Name=mRNA_L-digitata_M_contig102555.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=156bp|location=Sequence derived from alignment at L-digitata_M_contig102555:3..158+ (Laminaria digitata LdigPH10_18mv male)
GCCGAGAACGGCCATATCGAGGTTGTGGACTTGCTGCTGTCTTACAGGGC
ACCGGTAGATCAGGAAAACCGCGATGGGCGCTCGCCGCTGATGGCAGCCG
CACGTGCGGGACATGTTGAAATTACACGTATCCTTATCGAAGCCGGAGCT
GATGTG